RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 RTL8BQ17RB0 113 aa7.28□□□□□ -1.24
VPS53-203ENST00000401468 PHLDA2Q53GA4 152 aa7.28□□□□□ -1.24
VPS53-203ENST00000401468 TMEM128Q5BJH2 165 aa7.28□□□□□ -1.24
VPS53-203ENST00000401468 C11orf88Q6PI97 169 aa7.28□□□□□ -1.24
VPS53-203ENST00000401468 Q8N2B8 174 aa7.28□□□□□ -1.24
VPS53-203ENST00000401468 Q8N9W7 124 aa7.28□□□□□ -1.24
VPS53-203ENST00000401468 ADAD2Q8NCV1 583 aaKnown RBP7.28□□□□□ -1.24
VPS53-203ENST00000401468 OR4S2Q8NH73 311 aa7.28□□□□□ -1.24
VPS53-203ENST00000401468 TCTEX1D2Q8WW35 142 aa7.28□□□□□ -1.24
VPS53-203ENST00000401468 FLYWCH2Q96CP2 140 aaKnown RBP7.28□□□□□ -1.24
VPS53-203ENST00000401468 TP53RKQ96S44 253 aa7.28□□□□□ -1.24
VPS53-203ENST00000401468 RANBP3Q9H6Z4 567 aaPredicted RBP7.28□□□□□ -1.24
VPS53-203ENST00000401468 NAA60Q9H7X0 242 aa7.28□□□□□ -1.24
VPS53-203ENST00000401468 RAB18Q9NP72 206 aa7.28□□□□□ -1.24
VPS53-203ENST00000401468 C14orf166Q9Y224 244 aaKnown RBP7.28□□□□□ -1.24
VPS53-203ENST00000401468 MMP24Q9Y5R2 645 aa7.28□□□□□ -1.24
VPS53-203ENST00000401468 C3orf85A0A1B0GTC6 90 aa7.27□□□□□ -1.25
VPS53-203ENST00000401468 LINC00854A0A1B0GVQ3 168 aa7.27□□□□□ -1.25
VPS53-203ENST00000401468 FAM240BA0A1B0GVZ2 78 aa7.27□□□□□ -1.25
VPS53-203ENST00000401468 SH2D7A6NKC9 451 aaPredicted RBP7.27□□□□□ -1.25
VPS53-203ENST00000401468 SRRM4A7MD48 611 aaKnown RBP7.27□□□□□ -1.25
VPS53-203ENST00000401468 NBR2O15453 112 aa7.27□□□□□ -1.25
VPS53-203ENST00000401468 CDS2O95674 445 aa7.27□□□□□ -1.25
VPS53-203ENST00000401468 HPRT1P00492 218 aa7.27□□□□□ -1.25
VPS53-203ENST00000401468 IGKV1-39P01597 117 aa7.27□□□□□ -1.25
VPS53-203ENST00000401468 IGKV1D-39P04432 117 aa7.27□□□□□ -1.25
VPS53-203ENST00000401468 P0C879 139 aa7.27□□□□□ -1.25
VPS53-203ENST00000401468 TMEM11P17152 192 aa7.27□□□□□ -1.25
VPS53-203ENST00000401468 F2RL1P55085 397 aa7.27□□□□□ -1.25
VPS53-203ENST00000401468 TAS2R31P59538 309 aa7.27□□□□□ -1.25
VPS53-203ENST00000401468 MRGPRG-AS1Q2M3A8 158 aa7.27□□□□□ -1.25
VPS53-203ENST00000401468 ABCA11PQ4W5N1 156 aa7.27□□□□□ -1.25
VPS53-203ENST00000401468 NRARPQ7Z6K4 114 aa7.27□□□□□ -1.25
VPS53-203ENST00000401468 SPAG16Q8N0X2 631 aa7.27□□□□□ -1.25
VPS53-203ENST00000401468 PUSL1Q8N0Z8 303 aaKnown RBP7.27□□□□□ -1.25
VPS53-203ENST00000401468 CENPSQ8N2Z9 138 aa7.27□□□□□ -1.25
VPS53-203ENST00000401468 C5orf56Q8N8D9 126 aa7.27□□□□□ -1.25
VPS53-203ENST00000401468 LRTM2Q8N967 370 aa7.27□□□□□ -1.25
VPS53-203ENST00000401468 OR51H1Q8NH63 302 aa7.27□□□□□ -1.25
VPS53-203ENST00000401468 GLYATL2Q8WU03 294 aa7.27□□□□□ -1.25
VPS53-203ENST00000401468 CAPSLQ8WWF8 208 aa7.27□□□□□ -1.25
VPS53-203ENST00000401468 RBMXL1Q96E39 390 aaKnown RBP7.27□□□□□ -1.25
VPS53-203ENST00000401468 TMEM56Q96MV1 263 aa7.27□□□□□ -1.25
VPS53-203ENST00000401468 MARVELD1Q9BSK0 173 aa7.27□□□□□ -1.25
VPS53-203ENST00000401468 SLC25A33Q9BSK2 321 aa7.27□□□□□ -1.25
VPS53-203ENST00000401468 TMEM222Q9H0R3 208 aa7.27□□□□□ -1.25
VPS53-203ENST00000401468 C20orf85Q9H1P6 137 aa7.27□□□□□ -1.25
VPS53-203ENST00000401468 MOB4Q9Y3A3 225 aa7.27□□□□□ -1.25
VPS53-203ENST00000401468 NUBP2Q9Y5Y2 271 aa7.27□□□□□ -1.25
VPS53-203ENST00000401468 TMEM56-RWDD3S4R434 201 aa7.27□□□□□ -1.25
VPS53-203ENST00000401468 TEX13DA0A0J9YY54 714 aaPredicted RBP7.26□□□□□ -1.25
VPS53-203ENST00000401468 H7C2Y5 167 aa7.26□□□□□ -1.25
VPS53-203ENST00000401468 M0QZ24 198 aa7.26□□□□□ -1.25
VPS53-203ENST00000401468 RRHO14718 337 aa7.26□□□□□ -1.25
VPS53-203ENST00000401468 FCGR3BO75015 233 aa7.26□□□□□ -1.25
VPS53-203ENST00000401468 TSPAN9O75954 239 aa7.26□□□□□ -1.25
VPS53-203ENST00000401468 CRYZL1O95825 349 aa7.26□□□□□ -1.25
VPS53-203ENST00000401468 HLA-DRB1P01911 266 aa7.26□□□□□ -1.25
VPS53-203ENST00000401468 OR5AC1P0C628 307 aa7.26□□□□□ -1.25
VPS53-203ENST00000401468 CNTFRP26992 372 aa7.26□□□□□ -1.25
VPS53-203ENST00000401468 UBE2KP61086 200 aa7.26□□□□□ -1.25
VPS53-203ENST00000401468 SSBP2P81877 361 aaPredicted RBP7.26□□□□□ -1.25
VPS53-203ENST00000401468 CBX3Q13185 183 aa7.26□□□□□ -1.25
VPS53-203ENST00000401468 TMEM187Q14656 261 aa7.26□□□□□ -1.25
VPS53-203ENST00000401468 PSG5Q15238 335 aa7.26□□□□□ -1.25
VPS53-203ENST00000401468 C5orf64Q2M2E5 130 aa7.26□□□□□ -1.25
VPS53-203ENST00000401468 NSUN5P1Q3KNT7 163 aa7.26□□□□□ -1.25
VPS53-203ENST00000401468 SGPP2Q8IWX5 399 aa7.26□□□□□ -1.25
VPS53-203ENST00000401468 KLHDC1Q8N7A1 406 aa7.26□□□□□ -1.25
VPS53-203ENST00000401468 TEX45Q8NA69 505 aa7.26□□□□□ -1.25
VPS53-203ENST00000401468 POC5Q8NA72 575 aa7.26□□□□□ -1.25
VPS53-203ENST00000401468 IL22RA2Q969J5 263 aa7.26□□□□□ -1.25
VPS53-203ENST00000401468 SEC22AQ96IW7 307 aa7.26□□□□□ -1.25
VPS53-203ENST00000401468 HARBI1Q96MB7 349 aa7.26□□□□□ -1.25
VPS53-203ENST00000401468 TSNAXQ99598 290 aaKnown RBP7.26□□□□□ -1.25
VPS53-203ENST00000401468 AIFM2Q9BRQ8 373 aa7.26□□□□□ -1.25
VPS53-203ENST00000401468 WNT10AQ9GZT5 417 aa7.26□□□□□ -1.25
VPS53-203ENST00000401468 NUDT15Q9NV35 164 aa7.26□□□□□ -1.25
VPS53-203ENST00000401468 ZNF580Q9UK33 172 aa7.26□□□□□ -1.25
VPS53-203ENST00000401468 FLVCR2Q9UPI3 526 aa7.26□□□□□ -1.25
VPS53-203ENST00000401468 A0A1W2PRX2 142 aa7.25□□□□□ -1.25
VPS53-203ENST00000401468 G3V4G9 280 aa7.25□□□□□ -1.25
VPS53-203ENST00000401468 H3BS24 57 aa7.25□□□□□ -1.25
VPS53-203ENST00000401468 ARPC1BO15143 372 aaKnown RBP7.25□□□□□ -1.25
VPS53-203ENST00000401468 SHOXO15266 292 aa7.25□□□□□ -1.25
VPS53-203ENST00000401468 PEX14O75381 377 aa7.25□□□□□ -1.25
VPS53-203ENST00000401468 S1PR2O95136 353 aa7.25□□□□□ -1.25
VPS53-203ENST00000401468 SFT2D2O95562 160 aa7.25□□□□□ -1.25
VPS53-203ENST00000401468 HRASP01112 189 aa7.25□□□□□ -1.25
VPS53-203ENST00000401468 IL5P05113 134 aa7.25□□□□□ -1.25
VPS53-203ENST00000401468 OR4E1P0C645 316 aa7.25□□□□□ -1.25
VPS53-203ENST00000401468 CD28P10747 220 aa7.25□□□□□ -1.25
VPS53-203ENST00000401468 NQO2P16083 231 aa7.25□□□□□ -1.25
VPS53-203ENST00000401468 CRIP2P52943 208 aaPredicted RBP7.25□□□□□ -1.25
VPS53-203ENST00000401468 DHRS2Q13268 280 aa7.25□□□□□ -1.25
VPS53-203ENST00000401468 PPP1R1AQ13522 171 aa7.25□□□□□ -1.25
VPS53-203ENST00000401468 HES1Q14469 280 aa7.25□□□□□ -1.25
VPS53-203ENST00000401468 MMDQ15546 238 aa7.25□□□□□ -1.25
VPS53-203ENST00000401468 AARDQ4LEZ3 155 aa7.25□□□□□ -1.25
VPS53-203ENST00000401468 LHFPL5Q8TAF8 219 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms