RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 A0A1W2PS18 150 aa7.89□□□□□ -1.15
COL28A1-201ENST00000399429 TIMM8AO60220 97 aaPredicted RBP7.89□□□□□ -1.15
COL28A1-201ENST00000399429 ARG2P78540 354 aa7.89□□□□□ -1.15
COL28A1-201ENST00000399429 PLPPR1Q8TBJ4 325 aa7.89□□□□□ -1.15
COL28A1-201ENST00000399429 RASL10BQ96S79 203 aa7.89□□□□□ -1.15
COL28A1-201ENST00000399429 GNB1LQ9BYB4 327 aa7.89□□□□□ -1.15
COL28A1-201ENST00000399429 PLA2G2FQ9BZM2 168 aa7.89□□□□□ -1.15
COL28A1-201ENST00000399429 CSTL1Q9H114 145 aa7.89□□□□□ -1.15
COL28A1-201ENST00000399429 JKAMPQ9P055 326 aa7.89□□□□□ -1.15
COL28A1-201ENST00000399429 AKAP6Q13023 2319 aa7.89□□□□□ -1.15
COL28A1-201ENST00000399429 IGKV3-11P04433 115 aa7.89□□□□□ -1.15
COL28A1-201ENST00000399429 TNXAQ16473 311 aa7.89□□□□□ -1.15
COL28A1-201ENST00000399429 STPG3Q8N7X2 389 aa7.89□□□□□ -1.15
COL28A1-201ENST00000399429 OR10D3Q8NH80 312 aa7.89□□□□□ -1.15
COL28A1-201ENST00000399429 ZNF837Q96EG3 531 aaPredicted RBP7.89□□□□□ -1.15
COL28A1-201ENST00000399429 EAF1Q96JC9 268 aaPredicted RBP7.89□□□□□ -1.15
COL28A1-201ENST00000399429 GUCD1Q96NT3 240 aa7.89□□□□□ -1.15
COL28A1-201ENST00000399429 MRPL13Q9BYD1 178 aaKnown RBP7.89□□□□□ -1.15
COL28A1-201ENST00000399429 MPDU1O75352 247 aa7.88□□□□□ -1.15
COL28A1-201ENST00000399429 PRSS1P07477 247 aa7.88□□□□□ -1.15
COL28A1-201ENST00000399429 COL8A1P27658 744 aa7.88□□□□□ -1.15
COL28A1-201ENST00000399429 ZNF501Q96CX3 271 aaPredicted RBP7.88□□□□□ -1.15
COL28A1-201ENST00000399429 PGLYRP4Q96LB8 373 aa7.88□□□□□ -1.15
COL28A1-201ENST00000399429 TMEM38BQ9NVV0 291 aa7.88□□□□□ -1.15
COL28A1-201ENST00000399429 VWA8A3KMH1 1905 aa7.88□□□□□ -1.15
COL28A1-201ENST00000399429 RBFOX2O43251 390 aaKnown RBP eCLIP7.88□□□□□ -1.15
COL28A1-201ENST00000399429 PDLIM4P50479 330 aa7.88□□□□□ -1.15
COL28A1-201ENST00000399429 PAX9P55771 341 aa7.88□□□□□ -1.15
COL28A1-201ENST00000399429 PSG9Q00887 426 aa7.88□□□□□ -1.15
COL28A1-201ENST00000399429 OR10J3Q5JRS4 329 aa7.88□□□□□ -1.15
COL28A1-201ENST00000399429 WIPI1Q5MNZ9 446 aaPredicted RBP7.88□□□□□ -1.15
COL28A1-201ENST00000399429 ANKRD37Q7Z713 158 aa7.88□□□□□ -1.15
COL28A1-201ENST00000399429 VKORC1L1Q8N0U8 176 aa7.88□□□□□ -1.15
COL28A1-201ENST00000399429 ZNF114Q8NC26 417 aa7.88□□□□□ -1.15
COL28A1-201ENST00000399429 OR5P3Q8WZ94 311 aa7.88□□□□□ -1.15
COL28A1-201ENST00000399429 COMMD5Q9GZQ3 224 aa7.88□□□□□ -1.15
COL28A1-201ENST00000399429 DLL3Q9NYJ7 618 aa7.88□□□□□ -1.15
COL28A1-201ENST00000399429 ANAPC10Q9UM13 185 aa7.88□□□□□ -1.15
COL28A1-201ENST00000399429 ZSWIM8A7E2V4 1837 aa7.88□□□□□ -1.15
COL28A1-201ENST00000399429 K7EQM0 130 aa7.88□□□□□ -1.15
COL28A1-201ENST00000399429 IGKV1D-33P01593 117 aa7.88□□□□□ -1.15
COL28A1-201ENST00000399429 IGKV1-33P01594 117 aa7.88□□□□□ -1.15
COL28A1-201ENST00000399429 ORM2P19652 201 aa7.88□□□□□ -1.15
COL28A1-201ENST00000399429 KCNMB1Q16558 191 aa7.88□□□□□ -1.15
COL28A1-201ENST00000399429 TMEM116Q8NCL8 245 aa7.88□□□□□ -1.15
COL28A1-201ENST00000399429 PYGO2Q9BRQ0 406 aa7.88□□□□□ -1.15
COL28A1-201ENST00000399429 IGKV1-27A0A075B6S5 117 aa7.87□□□□□ -1.15
COL28A1-201ENST00000399429 TRAV9-1A0A075B6T8 112 aa7.87□□□□□ -1.15
COL28A1-201ENST00000399429 E9PLN8 166 aa7.87□□□□□ -1.15
COL28A1-201ENST00000399429 CT45A6P0DMU7 189 aa7.87□□□□□ -1.15
COL28A1-201ENST00000399429 CT45A5P0DMU8 189 aa7.87□□□□□ -1.15
COL28A1-201ENST00000399429 CT45A10P0DMU9 189 aa7.87□□□□□ -1.15
COL28A1-201ENST00000399429 CT45A7P0DMV0 189 aa7.87□□□□□ -1.15
COL28A1-201ENST00000399429 CCL1P22362 96 aa7.87□□□□□ -1.15
COL28A1-201ENST00000399429 ZNF83P51522 516 aa7.87□□□□□ -1.15
COL28A1-201ENST00000399429 DSCR4P56555 118 aaPredicted RBP7.87□□□□□ -1.15
COL28A1-201ENST00000399429 SELENOVP59797 346 aa7.87□□□□□ -1.15
COL28A1-201ENST00000399429 CT45A1Q5HYN5 189 aa7.87□□□□□ -1.15
COL28A1-201ENST00000399429 CT45A3Q8NHU0 189 aa7.87□□□□□ -1.15
COL28A1-201ENST00000399429 FLYWCH2Q96CP2 140 aaKnown RBP7.87□□□□□ -1.15
COL28A1-201ENST00000399429 COL25A1Q9BXS0 654 aaPredicted RBP7.87□□□□□ -1.15
COL28A1-201ENST00000399429 THYN1Q9P016 225 aa7.87□□□□□ -1.15
COL28A1-201ENST00000399429 TMEM265A0A087WTH1 108 aa7.87□□□□□ -1.15
COL28A1-201ENST00000399429 FAM181BA6NEQ2 426 aa7.87□□□□□ -1.15
COL28A1-201ENST00000399429 NPIPB13A6NJU9 1138 aa7.87□□□□□ -1.15
COL28A1-201ENST00000399429 NPIPB4C9JG80 1138 aa7.87□□□□□ -1.15
COL28A1-201ENST00000399429 PLAUP00749 431 aa7.87□□□□□ -1.15
COL28A1-201ENST00000399429 TMEM97Q5BJF2 176 aa7.87□□□□□ -1.15
COL28A1-201ENST00000399429 Q8NFD4 153 aa7.87□□□□□ -1.15
COL28A1-201ENST00000399429 OR1L1Q8NH94 360 aa7.87□□□□□ -1.15
COL28A1-201ENST00000399429 FLVCR1-AS1Q8TAF5 88 aa7.87□□□□□ -1.15
COL28A1-201ENST00000399429 POM121L2Q96KW2 1035 aa7.87□□□□□ -1.15
COL28A1-201ENST00000399429 TWSG1Q9GZX9 223 aa7.87□□□□□ -1.15
COL28A1-201ENST00000399429 DOCK7Q96N67 2140 aa7.87□□□□□ -1.15
COL28A1-201ENST00000399429 IGHV2-70DA0A0C4DH43 119 aa7.87□□□□□ -1.15
COL28A1-201ENST00000399429 IGLL1P15814 213 aa7.87□□□□□ -1.15
COL28A1-201ENST00000399429 CCR5P51681 352 aa7.87□□□□□ -1.15
COL28A1-201ENST00000399429 MRPS21P82921 87 aaKnown RBP7.87□□□□□ -1.15
COL28A1-201ENST00000399429 PAX2Q02962 417 aa7.87□□□□□ -1.15
COL28A1-201ENST00000399429 OR1B1Q8NGR6 318 aa7.87□□□□□ -1.15
COL28A1-201ENST00000399429 TSKUQ8WUA8 353 aa7.87□□□□□ -1.15
COL28A1-201ENST00000399429 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa7.86□□□□□ -1.15
COL28A1-201ENST00000399429 A1L4Q6 167 aa7.86□□□□□ -1.15
COL28A1-201ENST00000399429 NLRC5Q86WI3 1866 aa7.86□□□□□ -1.15
COL28A1-201ENST00000399429 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP7.86□□□□□ -1.15
COL28A1-201ENST00000399429 PRSS47A8MTI9 375 aa7.86□□□□□ -1.15
COL28A1-201ENST00000399429 ESDP10768 282 aa7.86□□□□□ -1.15
COL28A1-201ENST00000399429 ERHP84090 104 aaKnown RBP7.86□□□□□ -1.15
COL28A1-201ENST00000399429 LRRC10Q5BKY1 277 aa7.86□□□□□ -1.15
COL28A1-201ENST00000399429 OR1L4Q8NGR5 311 aa7.86□□□□□ -1.15
COL28A1-201ENST00000399429 SAP30O75446 220 aa7.86□□□□□ -1.15
COL28A1-201ENST00000399429 TBC1D28Q2M2D7 210 aa7.86□□□□□ -1.15
COL28A1-201ENST00000399429 FSCN3Q9NQT6 498 aa7.86□□□□□ -1.15
COL28A1-201ENST00000399429 DOPEY2Q9Y3R5 2298 aa7.86□□□□□ -1.15
COL28A1-201ENST00000399429 A0A0J9YW62 118 aa7.86□□□□□ -1.15
COL28A1-201ENST00000399429 LILRA5A6NI73 299 aa7.86□□□□□ -1.15
COL28A1-201ENST00000399429 A8MWL6 223 aa7.86□□□□□ -1.15
COL28A1-201ENST00000399429 ENSAO43768 121 aaKnown RBP7.86□□□□□ -1.15
COL28A1-201ENST00000399429 RAMP3O60896 148 aa7.86□□□□□ -1.15
COL28A1-201ENST00000399429 SCGB2A1O75556 95 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms