RNA–Protein interactions for RNA: ENST00000394989.6

SNCA-204, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-204ENST00000394989 HCFC1P51610 2035 aa11.52□□□□□ -0.56
SNCA-204ENST00000394989 UBE2L5PA0A1B0GUS4 154 aa11.52□□□□□ -0.57
SNCA-204ENST00000394989 FCGR3BO75015 233 aa11.52□□□□□ -0.57
SNCA-204ENST00000394989 ADIPOQQ15848 244 aa11.52□□□□□ -0.57
SNCA-204ENST00000394989 OR5T1Q8NG75 326 aa11.52□□□□□ -0.57
SNCA-204ENST00000394989 CLDND2Q8NHS1 167 aa11.52□□□□□ -0.57
SNCA-204ENST00000394989 SCGB1C1Q8TD33 95 aa11.52□□□□□ -0.57
SNCA-204ENST00000394989 DTD1Q8TEA8 209 aa11.52□□□□□ -0.57
SNCA-204ENST00000394989 R3HDM4Q96D70 268 aa11.52□□□□□ -0.57
SNCA-204ENST00000394989 RBM14Q96PK6 669 aaKnown RBP11.52□□□□□ -0.57
SNCA-204ENST00000394989 HIST1H2BLQ99880 126 aa11.52□□□□□ -0.57
SNCA-204ENST00000394989 PSMG3Q9BT73 122 aaPredicted RBP11.52□□□□□ -0.57
SNCA-204ENST00000394989 FAM234AQ9H0X4 552 aa11.52□□□□□ -0.57
SNCA-204ENST00000394989 GNG13Q9P2W3 67 aa11.52□□□□□ -0.57
SNCA-204ENST00000394989 GAB2Q9UQC2 676 aa11.52□□□□□ -0.57
SNCA-204ENST00000394989 LAMP3Q9UQV4 416 aa11.52□□□□□ -0.57
SNCA-204ENST00000394989 GYPAP02724 150 aa11.52□□□□□ -0.57
SNCA-204ENST00000394989 CCL8P80075 99 aa11.52□□□□□ -0.57
SNCA-204ENST00000394989 ICAM4Q14773 271 aa11.52□□□□□ -0.57
SNCA-204ENST00000394989 FAM216BQ8N7L0 139 aa11.52□□□□□ -0.57
SNCA-204ENST00000394989 CCL13Q99616 98 aa11.52□□□□□ -0.57
SNCA-204ENST00000394989 QTRT1Q9BXR0 403 aaKnown RBP11.52□□□□□ -0.57
SNCA-204ENST00000394989 PARD6GQ9BYG4 376 aaPredicted RBP11.52□□□□□ -0.57
SNCA-204ENST00000394989 M0R1X1 148 aa11.51□□□□□ -0.57
SNCA-204ENST00000394989 SPCS3P61009 180 aa11.51□□□□□ -0.57
SNCA-204ENST00000394989 RPS16P62249 146 aaKnown RBP11.51□□□□□ -0.57
SNCA-204ENST00000394989 CT45A1Q5HYN5 189 aa11.51□□□□□ -0.57
SNCA-204ENST00000394989 VKORC1L1Q8N0U8 176 aa11.51□□□□□ -0.57
SNCA-204ENST00000394989 CT45A3Q8NHU0 189 aa11.51□□□□□ -0.57
SNCA-204ENST00000394989 TAF15Q92804 592 aaKnown RBP eCLIP11.51□□□□□ -0.57
SNCA-204ENST00000394989 RBMXL1Q96E39 390 aaKnown RBP11.51□□□□□ -0.57
SNCA-204ENST00000394989 SMDT1Q9H4I9 107 aa11.51□□□□□ -0.57
SNCA-204ENST00000394989 NCOR1P1Q9H4R4 102 aa11.51□□□□□ -0.57
SNCA-204ENST00000394989 CBLN4Q9NTU7 201 aa11.51□□□□□ -0.57
SNCA-204ENST00000394989 PTPRQQ9UMZ3 2332 aa11.51□□□□□ -0.57
SNCA-204ENST00000394989 ROS1P08922 2347 aa11.51□□□□□ -0.57
SNCA-204ENST00000394989 KBTBD11-OT1A0A1B0GTJ5 212 aa11.51□□□□□ -0.57
SNCA-204ENST00000394989 OR4A8P0C604 315 aa11.51□□□□□ -0.57
SNCA-204ENST00000394989 ZNF25P17030 456 aaPredicted RBP11.51□□□□□ -0.57
SNCA-204ENST00000394989 FGF8P55075 233 aaPredicted RBP11.51□□□□□ -0.57
SNCA-204ENST00000394989 ZNF788Q6ZQV5 615 aa11.51□□□□□ -0.57
SNCA-204ENST00000394989 TRAV1-1A0A0B4J248 108 aa11.51□□□□□ -0.57
SNCA-204ENST00000394989 BTF3P20290 206 aaKnown RBP11.51□□□□□ -0.57
SNCA-204ENST00000394989 C1QL4Q86Z23 238 aa11.51□□□□□ -0.57
SNCA-204ENST00000394989 FAM216AQ8WUB2 273 aa11.51□□□□□ -0.57
SNCA-204ENST00000394989 DDB2Q92466 427 aa11.51□□□□□ -0.57
SNCA-204ENST00000394989 HPRT1P00492 218 aa11.5□□□□□ -0.57
SNCA-204ENST00000394989 SRP19P09132 144 aaKnown RBP11.5□□□□□ -0.57
SNCA-204ENST00000394989 FAM87AP0C7U9 286 aa11.5□□□□□ -0.57
SNCA-204ENST00000394989 BATFQ16520 125 aa11.5□□□□□ -0.57
SNCA-204ENST00000394989 AARDQ4LEZ3 155 aa11.5□□□□□ -0.57
SNCA-204ENST00000394989 TEX36Q5VZQ5 186 aa11.5□□□□□ -0.57
SNCA-204ENST00000394989 A6NNC1 897 aa11.5□□□□□ -0.57
SNCA-204ENST00000394989 RBMXL2O75526 392 aaKnown RBP11.5□□□□□ -0.57
SNCA-204ENST00000394989 MMP23AO75900 390 aa11.5□□□□□ -0.57
SNCA-204ENST00000394989 IGKV1D-33P01593 117 aa11.5□□□□□ -0.57
SNCA-204ENST00000394989 IGKV1-33P01594 117 aa11.5□□□□□ -0.57
SNCA-204ENST00000394989 TNFSF4P23510 183 aa11.5□□□□□ -0.57
SNCA-204ENST00000394989 SERF2P84101 59 aa11.5□□□□□ -0.57
SNCA-204ENST00000394989 ZNF506Q5JVG8 444 aa11.5□□□□□ -0.57
SNCA-204ENST00000394989 LCN15Q6UWW0 184 aa11.5□□□□□ -0.57
SNCA-204ENST00000394989 TVP23CQ96ET8 276 aa11.5□□□□□ -0.57
SNCA-204ENST00000394989 RCC1LQ96I51 464 aaKnown RBP11.5□□□□□ -0.57
SNCA-204ENST00000394989 KDF1Q8NAX2 398 aaPredicted RBP11.49□□□□□ -0.57
SNCA-204ENST00000394989 ZNF665Q9H7R5 613 aa11.49□□□□□ -0.57
SNCA-204ENST00000394989 LRBAP50851 2863 aa11.49□□□□□ -0.57
SNCA-204ENST00000394989 DCHS2Q6V1P9 2916 aa11.49□□□□□ -0.57
SNCA-204ENST00000394989 SAA2-SAA4A0A096LPE2 208 aa11.49□□□□□ -0.57
SNCA-204ENST00000394989 C17orf100A8MU93 164 aa11.49□□□□□ -0.57
SNCA-204ENST00000394989 FCN3O75636 299 aa11.49□□□□□ -0.57
SNCA-204ENST00000394989 SAA2P0DJI9 122 aaPredicted RBP11.49□□□□□ -0.57
SNCA-204ENST00000394989 ZNF439Q8NDP4 499 aa11.49□□□□□ -0.57
SNCA-204ENST00000394989 TMEM37Q8WXS4 190 aa11.49□□□□□ -0.57
SNCA-204ENST00000394989 YPEL4Q96NS1 127 aa11.49□□□□□ -0.57
SNCA-204ENST00000394989 TET2Q6N021 2002 aaPredicted RBP11.49□□□□□ -0.57
SNCA-204ENST00000394989 TRAV3A0A0B4J244 114 aa11.49□□□□□ -0.57
SNCA-204ENST00000394989 HMGB3O15347 200 aaKnown RBP11.49□□□□□ -0.57
SNCA-204ENST00000394989 ELLP55199 621 aaPredicted RBP11.49□□□□□ -0.57
SNCA-204ENST00000394989 MBD3L1Q8WWY6 194 aa11.49□□□□□ -0.57
SNCA-204ENST00000394989 TMEM68Q96MH6 324 aa11.49□□□□□ -0.57
SNCA-204ENST00000394989 TRGV10A0A0A0MS01 117 aa11.48□□□□□ -0.57
SNCA-204ENST00000394989 CEBPZOSA8MTT3 80 aa11.48□□□□□ -0.57
SNCA-204ENST00000394989 ITGB1BP1O14713 200 aa11.48□□□□□ -0.57
SNCA-204ENST00000394989 RBFOX2O43251 390 aaKnown RBP eCLIP11.48□□□□□ -0.57
SNCA-204ENST00000394989 HBE1P02100 147 aa11.48□□□□□ -0.57
SNCA-204ENST00000394989 GZMBP10144 247 aa11.48□□□□□ -0.57
SNCA-204ENST00000394989 CD33P20138 364 aa11.48□□□□□ -0.57
SNCA-204ENST00000394989 CENPVQ7Z7K6 275 aaPredicted RBP11.48□□□□□ -0.57
SNCA-204ENST00000394989 RPP25LQ8N5L8 163 aaKnown RBP11.48□□□□□ -0.57
SNCA-204ENST00000394989 C15orf62A8K5M9 175 aa11.48□□□□□ -0.57
SNCA-204ENST00000394989 HSPB1P04792 205 aaKnown RBP11.48□□□□□ -0.57
SNCA-204ENST00000394989 PRSS8Q16651 343 aa11.48□□□□□ -0.57
SNCA-204ENST00000394989 TMEM41BQ5BJD5 291 aa11.48□□□□□ -0.57
SNCA-204ENST00000394989 ACSM6Q6P461 480 aa11.48□□□□□ -0.57
SNCA-204ENST00000394989 CIB3Q96Q77 187 aaPredicted RBP11.48□□□□□ -0.57
SNCA-204ENST00000394989 LINC00574Q9H8X3 128 aa11.48□□□□□ -0.57
SNCA-204ENST00000394989 TFF3Q07654 80 aa11.47□□□□□ -0.57
SNCA-204ENST00000394989 VWC2Q2TAL6 325 aa11.47□□□□□ -0.57
SNCA-204ENST00000394989 OR10P1Q8NGE3 313 aa11.47□□□□□ -0.57
SNCA-204ENST00000394989 SIRT7Q9NRC8 400 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms