RNA–Protein interactions for RNA: ENST00000394272.7

HDDC3-202, Transcript of HD domain containing 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HDDC3, Length 1,880 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-202ENST00000394272 CFDP00746 253 aaPredicted RBP16.37■□□□□ 0.21
HDDC3-202ENST00000394272 IGLV2-23P01705 113 aa16.37■□□□□ 0.21
HDDC3-202ENST00000394272 IAPPP10997 89 aa16.37■□□□□ 0.21
HDDC3-202ENST00000394272 CAV2P51636 162 aa16.37■□□□□ 0.21
HDDC3-202ENST00000394272 HABP2Q14520 560 aaPredicted RBP16.37■□□□□ 0.21
HDDC3-202ENST00000394272 Q5PR19 223 aa16.37■□□□□ 0.21
HDDC3-202ENST00000394272 OR8H3Q8N146 312 aa16.37■□□□□ 0.21
HDDC3-202ENST00000394272 TMEM252Q8N6L7 170 aa16.37■□□□□ 0.21
HDDC3-202ENST00000394272 OR8H1Q8NGG4 311 aa16.37■□□□□ 0.21
HDDC3-202ENST00000394272 SMIM8Q96KF7 97 aa16.37■□□□□ 0.21
HDDC3-202ENST00000394272 CYTL1Q9NRR1 136 aa16.37■□□□□ 0.21
HDDC3-202ENST00000394272 TMEM14BQ9NUH8 114 aa16.37■□□□□ 0.21
HDDC3-202ENST00000394272 HILPDAQ9Y5L2 63 aa16.37■□□□□ 0.21
HDDC3-202ENST00000394272 IGSF23A1L1A6 192 aa16.36■□□□□ 0.21
HDDC3-202ENST00000394272 UPK2O00526 184 aa16.36■□□□□ 0.21
HDDC3-202ENST00000394272 TAS2R30P59541 319 aa16.36■□□□□ 0.21
HDDC3-202ENST00000394272 RPS16P62249 146 aaKnown RBP16.36■□□□□ 0.21
HDDC3-202ENST00000394272 EWSR1Q01844 656 aaKnown RBP eCLIP16.36■□□□□ 0.21
HDDC3-202ENST00000394272 RITA1Q96K30 269 aa16.36■□□□□ 0.21
HDDC3-202ENST00000394272 ZC4H2Q9NQZ6 224 aa16.36■□□□□ 0.21
HDDC3-202ENST00000394272 FOXA2Q9Y261 457 aaPredicted RBP16.36■□□□□ 0.21
HDDC3-202ENST00000394272 TBL2Q9Y4P3 447 aaKnown RBP16.36■□□□□ 0.21
HDDC3-202ENST00000394272 TIMM23O14925 209 aa16.35■□□□□ 0.21
HDDC3-202ENST00000394272 RPL23AP62750 156 aaKnown RBP16.35■□□□□ 0.21
HDDC3-202ENST00000394272 PRSS57Q6UWY2 283 aa16.35■□□□□ 0.21
HDDC3-202ENST00000394272 KRTAP1-3Q8IUG1 177 aa16.35■□□□□ 0.21
HDDC3-202ENST00000394272 ZNF680Q8NEM1 530 aa16.35■□□□□ 0.21
HDDC3-202ENST00000394272 CFHR4Q92496 578 aa16.35■□□□□ 0.21
HDDC3-202ENST00000394272 ZDHHC16Q969W1 377 aa16.35■□□□□ 0.21
HDDC3-202ENST00000394272 BSCL2Q96G97 398 aaPredicted RBP16.35■□□□□ 0.21
HDDC3-202ENST00000394272 OOSP1A8MZH6 123 aa16.35■□□□□ 0.21
HDDC3-202ENST00000394272 KBTBD11O94819 623 aa16.35■□□□□ 0.21
HDDC3-202ENST00000394272 LGALS7P47929 136 aa16.35■□□□□ 0.21
HDDC3-202ENST00000394272 SPCS3P61009 180 aa16.35■□□□□ 0.21
HDDC3-202ENST00000394272 NHLH2Q02577 135 aa16.35■□□□□ 0.21
HDDC3-202ENST00000394272 LOXL1Q08397 574 aaPredicted RBP16.35■□□□□ 0.21
HDDC3-202ENST00000394272 CLEC9AQ6UXN8 241 aa16.35■□□□□ 0.21
HDDC3-202ENST00000394272 ZNF471Q9BX82 626 aaPredicted RBP16.35■□□□□ 0.21
HDDC3-202ENST00000394272 SLC25A31Q9H0C2 315 aa16.35■□□□□ 0.21
HDDC3-202ENST00000394272 FBXL17Q9UF56 701 aa16.35■□□□□ 0.21
HDDC3-202ENST00000394272 CACFD1Q9UGQ2 172 aa16.35■□□□□ 0.21
HDDC3-202ENST00000394272 CR1P17927 2039 aa16.35■□□□□ 0.21
HDDC3-202ENST00000394272 H3BP45 60 aa16.34■□□□□ 0.21
HDDC3-202ENST00000394272 TAAR5O14804 337 aa16.34■□□□□ 0.21
HDDC3-202ENST00000394272 LGALS4P56470 323 aa16.34■□□□□ 0.21
HDDC3-202ENST00000394272 ZNF767PQ75MW2 155 aa16.34■□□□□ 0.21
HDDC3-202ENST00000394272 DYNAPQ8N1N2 210 aa16.34■□□□□ 0.21
HDDC3-202ENST00000394272 VSTM2AQ8TAG5 236 aa16.34■□□□□ 0.21
HDDC3-202ENST00000394272 DTD1Q8TEA8 209 aa16.34■□□□□ 0.21
HDDC3-202ENST00000394272 C17orf50Q8WW18 174 aa16.34■□□□□ 0.21
HDDC3-202ENST00000394272 AJUBAQ96IF1 538 aa16.34■□□□□ 0.21
HDDC3-202ENST00000394272 PSENENQ9NZ42 101 aa16.34■□□□□ 0.21
HDDC3-202ENST00000394272 PRNDQ9UKY0 176 aa16.34■□□□□ 0.21
HDDC3-202ENST00000394272 CENPVL3A0A0U1RRI6 287 aa16.33■□□□□ 0.21
HDDC3-202ENST00000394272 IFNA17P01571 189 aa16.33■□□□□ 0.21
HDDC3-202ENST00000394272 CD1BP29016 333 aa16.33■□□□□ 0.21
HDDC3-202ENST00000394272 SSX2Q16385 188 aa16.33■□□□□ 0.21
HDDC3-202ENST00000394272 ST8SIA2Q92186 375 aa16.33■□□□□ 0.21
HDDC3-202ENST00000394272 VENTXO95231 258 aa16.33■□□□□ 0.2
HDDC3-202ENST00000394272 SPDEFO95238 335 aa16.33■□□□□ 0.2
HDDC3-202ENST00000394272 UBA52P62987 128 aaKnown RBP16.33■□□□□ 0.2
HDDC3-202ENST00000394272 BAXQ07812 192 aa16.33■□□□□ 0.2
HDDC3-202ENST00000394272 EXOSC2Q13868 293 aaKnown RBP16.33■□□□□ 0.2
HDDC3-202ENST00000394272 SPINK9Q5DT21 86 aa16.33■□□□□ 0.2
HDDC3-202ENST00000394272 CCDC144NLQ6NUI1 221 aa16.33■□□□□ 0.2
HDDC3-202ENST00000394272 OR4A5Q8NH83 315 aa16.33■□□□□ 0.2
HDDC3-202ENST00000394272 STOML3Q8TAV4 291 aa16.33■□□□□ 0.2
HDDC3-202ENST00000394272 TMEM167AQ8TBQ9 72 aa16.33■□□□□ 0.2
HDDC3-202ENST00000394272 CIB3Q96Q77 187 aaPredicted RBP16.33■□□□□ 0.2
HDDC3-202ENST00000394272 TCF19Q9Y242 345 aa16.33■□□□□ 0.2
HDDC3-202ENST00000394272 UNC79Q9P2D8 2635 aa16.32■□□□□ 0.2
HDDC3-202ENST00000394272 TRAV20A0A0B4J274 112 aa16.32■□□□□ 0.2
HDDC3-202ENST00000394272 CEBPZOSA8MTT3 80 aa16.32■□□□□ 0.2
HDDC3-202ENST00000394272 PAX6P26367 422 aa16.32■□□□□ 0.2
HDDC3-202ENST00000394272 HSPE1P61604 102 aaKnown RBP16.32■□□□□ 0.2
HDDC3-202ENST00000394272 LINC01356Q8N9X3 169 aa16.32■□□□□ 0.2
HDDC3-202ENST00000394272 RNF5Q99942 180 aa16.32■□□□□ 0.2
HDDC3-202ENST00000394272 REG4Q9BYZ8 158 aa16.32■□□□□ 0.2
HDDC3-202ENST00000394272 HIF1ANQ9NWT6 349 aa16.32■□□□□ 0.2
HDDC3-202ENST00000394272 ZNF257Q9Y2Q1 563 aa16.32■□□□□ 0.2
HDDC3-202ENST00000394272 AUP1Q9Y679 476 aa16.32■□□□□ 0.2
HDDC3-202ENST00000394272 RNF223E7ERA6 249 aa16.31■□□□□ 0.2
HDDC3-202ENST00000394272 SAA4P35542 130 aa16.31■□□□□ 0.2
HDDC3-202ENST00000394272 VMA21Q3ZAQ7 101 aa16.31■□□□□ 0.2
HDDC3-202ENST00000394272 MALSU1Q96EH3 234 aa16.31■□□□□ 0.2
HDDC3-202ENST00000394272 SMIM3Q9BZL3 60 aa16.31■□□□□ 0.2
HDDC3-202ENST00000394272 NUP50Q9UKX7 468 aa16.31■□□□□ 0.2
HDDC3-202ENST00000394272 OR51B2Q9Y5P1 312 aa16.31■□□□□ 0.2
HDDC3-202ENST00000394272 PLXNB1O43157 2135 aa16.31■□□□□ 0.2
HDDC3-202ENST00000394272 NPFFO15130 113 aa16.31■□□□□ 0.2
HDDC3-202ENST00000394272 SLC25A17O43808 307 aa16.31■□□□□ 0.2
HDDC3-202ENST00000394272 CST7O76096 145 aa16.31■□□□□ 0.2
HDDC3-202ENST00000394272 IFNA7P01567 189 aa16.31■□□□□ 0.2
HDDC3-202ENST00000394272 CRYGBP07316 175 aa16.31■□□□□ 0.2
HDDC3-202ENST00000394272 MYOD1P15172 320 aa16.31■□□□□ 0.2
HDDC3-202ENST00000394272 GATA3P23771 443 aa16.31■□□□□ 0.2
HDDC3-202ENST00000394272 VDAC2P45880 294 aaPredicted RBP16.31■□□□□ 0.2
HDDC3-202ENST00000394272 SPANXN5Q5MJ07 72 aa16.31■□□□□ 0.2
HDDC3-202ENST00000394272 TMEM14EPQ6UXP3 125 aa16.31■□□□□ 0.2
HDDC3-202ENST00000394272 PIP4P2Q8N4L2 257 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms