RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 ZNF257Q9Y2Q1 563 aa16.57■□□□□ 0.24
CCDC28B-201ENST00000373602 MEIS3P1A6NDR6 274 aa16.56■□□□□ 0.24
CCDC28B-201ENST00000373602 HMX3A6NHT5 357 aa16.56■□□□□ 0.24
CCDC28B-201ENST00000373602 RBFOX2O43251 390 aaKnown RBP eCLIP16.56■□□□□ 0.24
CCDC28B-201ENST00000373602 ZNF735P0CB33 412 aa16.56■□□□□ 0.24
CCDC28B-201ENST00000373602 RPL27AP46776 148 aaKnown RBP16.56■□□□□ 0.24
CCDC28B-201ENST00000373602 FXYD4P59646 89 aa16.56■□□□□ 0.24
CCDC28B-201ENST00000373602 EXOSC2Q13868 293 aaKnown RBP16.56■□□□□ 0.24
CCDC28B-201ENST00000373602 TATDN3Q17R31 274 aa16.56■□□□□ 0.24
CCDC28B-201ENST00000373602 SPAG16Q8N0X2 631 aa16.56■□□□□ 0.24
CCDC28B-201ENST00000373602 SAMD12Q8N8I0 201 aa16.56■□□□□ 0.24
CCDC28B-201ENST00000373602 NECAP1Q8NC96 275 aa16.56■□□□□ 0.24
CCDC28B-201ENST00000373602 ANAPC10Q9UM13 185 aa16.56■□□□□ 0.24
CCDC28B-201ENST00000373602 NPIPB5A8MRT5 1133 aa16.55■□□□□ 0.24
CCDC28B-201ENST00000373602 E7EUB6 86 aa16.55■□□□□ 0.24
CCDC28B-201ENST00000373602 FRMD6-AS1P0C7T7 363 aa16.55■□□□□ 0.24
CCDC28B-201ENST00000373602 CATR1Q13166 79 aa16.55■□□□□ 0.24
CCDC28B-201ENST00000373602 SSX9Q7RTT3 188 aa16.55■□□□□ 0.24
CCDC28B-201ENST00000373602 SBSPONQ8IVN8 264 aa16.55■□□□□ 0.24
CCDC28B-201ENST00000373602 AIFM2Q9BRQ8 373 aa16.55■□□□□ 0.24
CCDC28B-201ENST00000373602 IFT46Q9NQC8 304 aa16.55■□□□□ 0.24
CCDC28B-201ENST00000373602 SLC2A9Q9NRM0 540 aa16.55■□□□□ 0.24
CCDC28B-201ENST00000373602 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP16.54■□□□□ 0.24
CCDC28B-201ENST00000373602 A0A1B0GW64 132 aa16.54■□□□□ 0.24
CCDC28B-201ENST00000373602 BMPR1BO00238 502 aa16.54■□□□□ 0.24
CCDC28B-201ENST00000373602 SULT1C2O00338 296 aa16.54■□□□□ 0.24
CCDC28B-201ENST00000373602 CSN3P07498 182 aa16.54■□□□□ 0.24
CCDC28B-201ENST00000373602 TAS2R20P59543 309 aa16.54■□□□□ 0.24
CCDC28B-201ENST00000373602 RPL8P62917 257 aaKnown RBP16.54■□□□□ 0.24
CCDC28B-201ENST00000373602 TMEM69Q5SWH9 247 aa16.54■□□□□ 0.24
CCDC28B-201ENST00000373602 ZNF818PQ6ZRF7 136 aa16.54■□□□□ 0.24
CCDC28B-201ENST00000373602 Q8N1Y9 231 aa16.54■□□□□ 0.24
CCDC28B-201ENST00000373602 OR4A5Q8NH83 315 aa16.54■□□□□ 0.24
CCDC28B-201ENST00000373602 SLC25A46Q96AG3 418 aa16.54■□□□□ 0.24
CCDC28B-201ENST00000373602 FYTTD1Q96QD9 318 aaKnown RBP16.54■□□□□ 0.24
CCDC28B-201ENST00000373602 BET1LQ9NYM9 111 aa16.54■□□□□ 0.24
CCDC28B-201ENST00000373602 SIGLEC8Q9NYZ4 499 aa16.54■□□□□ 0.24
CCDC28B-201ENST00000373602 OR2J3O76001 311 aa16.53■□□□□ 0.24
CCDC28B-201ENST00000373602 HPRT1P00492 218 aa16.53■□□□□ 0.24
CCDC28B-201ENST00000373602 NAT1P18440 290 aa16.53■□□□□ 0.24
CCDC28B-201ENST00000373602 POU2AF1Q16633 256 aa16.53■□□□□ 0.24
CCDC28B-201ENST00000373602 C15orf32Q32M92 178 aa16.53■□□□□ 0.24
CCDC28B-201ENST00000373602 OR4A47Q6IF82 309 aa16.53■□□□□ 0.24
CCDC28B-201ENST00000373602 DHRS11Q6UWP2 260 aa16.53■□□□□ 0.24
CCDC28B-201ENST00000373602 TMEM17Q86X19 198 aa16.53■□□□□ 0.24
CCDC28B-201ENST00000373602 KCTD12Q96CX2 325 aaKnown RBP16.53■□□□□ 0.24
CCDC28B-201ENST00000373602 EHFQ9NZC4 300 aa16.53■□□□□ 0.24
CCDC28B-201ENST00000373602 HUWE1Q7Z6Z7 4374 aaKnown RBP16.52■□□□□ 0.24
CCDC28B-201ENST00000373602 DPPA5A6NC42 116 aa16.52■□□□□ 0.24
CCDC28B-201ENST00000373602 H0Y980 276 aa16.52■□□□□ 0.24
CCDC28B-201ENST00000373602 CRYGCP07315 174 aa16.52■□□□□ 0.24
CCDC28B-201ENST00000373602 HLA-GP17693 338 aa16.52■□□□□ 0.24
CCDC28B-201ENST00000373602 TAS2R31P59538 309 aa16.52■□□□□ 0.24
CCDC28B-201ENST00000373602 HERV-K104P61576 105 aa16.52■□□□□ 0.24
CCDC28B-201ENST00000373602 FAM209BQ5JX69 171 aa16.52■□□□□ 0.24
CCDC28B-201ENST00000373602 C19orf35Q6ZS72 473 aa16.52■□□□□ 0.24
CCDC28B-201ENST00000373602 PEMTQ9UBM1 199 aa16.52■□□□□ 0.24
CCDC28B-201ENST00000373602 AREGP15514 252 aa16.51■□□□□ 0.23
CCDC28B-201ENST00000373602 PSMB6P28072 239 aa16.51■□□□□ 0.23
CCDC28B-201ENST00000373602 GNRHRP30968 328 aa16.51■□□□□ 0.23
CCDC28B-201ENST00000373602 PRSS3P35030 304 aa16.51■□□□□ 0.23
CCDC28B-201ENST00000373602 RFX2P48378 723 aa16.51■□□□□ 0.23
CCDC28B-201ENST00000373602 KLK9Q2XQG4 91 aa16.51■□□□□ 0.23
CCDC28B-201ENST00000373602 BORCS5Q969J3 196 aa16.51■□□□□ 0.23
CCDC28B-201ENST00000373602 FANCD2OSQ96PS1 177 aa16.51■□□□□ 0.23
CCDC28B-201ENST00000373602 FUNDC2Q9BWH2 189 aa16.51■□□□□ 0.23
CCDC28B-201ENST00000373602 HRASLSQ9HDD0 168 aa16.51■□□□□ 0.23
CCDC28B-201ENST00000373602 FBXL7Q9UJT9 491 aa16.51■□□□□ 0.23
CCDC28B-201ENST00000373602 KLK9Q9UKQ9 250 aa16.51■□□□□ 0.23
CCDC28B-201ENST00000373602 DMRT1Q9Y5R6 373 aa16.51■□□□□ 0.23
CCDC28B-201ENST00000373602 CGB1A6NKQ9 187 aa16.5■□□□□ 0.23
CCDC28B-201ENST00000373602 MYOD1P15172 320 aa16.5■□□□□ 0.23
CCDC28B-201ENST00000373602 NQO2P16083 231 aa16.5■□□□□ 0.23
CCDC28B-201ENST00000373602 CTRB1P17538 263 aa16.5■□□□□ 0.23
CCDC28B-201ENST00000373602 MECP2P51608 486 aaKnown RBP16.5■□□□□ 0.23
CCDC28B-201ENST00000373602 NCS1P62166 190 aa16.5■□□□□ 0.23
CCDC28B-201ENST00000373602 AADACL3Q5VUY0 350 aa16.5■□□□□ 0.23
CCDC28B-201ENST00000373602 CTRB2Q6GPI1 263 aa16.5■□□□□ 0.23
CCDC28B-201ENST00000373602 OR51H1Q8NH63 302 aa16.5■□□□□ 0.23
CCDC28B-201ENST00000373602 CD300LFQ8TDQ1 290 aa16.5■□□□□ 0.23
CCDC28B-201ENST00000373602 MOB3AQ96BX8 217 aa16.5■□□□□ 0.23
CCDC28B-201ENST00000373602 ZNF2Q9BSG1 426 aaPredicted RBP16.5■□□□□ 0.23
CCDC28B-201ENST00000373602 PLEKHA2Q9HB19 425 aa16.5■□□□□ 0.23
CCDC28B-201ENST00000373602 TENM3Q9P273 2699 aa16.49■□□□□ 0.23
CCDC28B-201ENST00000373602 A8MZ25 164 aa16.49■□□□□ 0.23
CCDC28B-201ENST00000373602 UPK2O00526 184 aa16.49■□□□□ 0.23
CCDC28B-201ENST00000373602 DHFRP00374 187 aa16.49■□□□□ 0.23
CCDC28B-201ENST00000373602 PMP2P02689 132 aa16.49■□□□□ 0.23
CCDC28B-201ENST00000373602 EIF4EP06730 217 aaKnown RBP16.49■□□□□ 0.23
CCDC28B-201ENST00000373602 IGHV4-30-4P0DP06 118 aa16.49■□□□□ 0.23
CCDC28B-201ENST00000373602 TAS2R46P59540 309 aa16.49■□□□□ 0.23
CCDC28B-201ENST00000373602 SGPP2Q8IWX5 399 aa16.49■□□□□ 0.23
CCDC28B-201ENST00000373602 Q8N402 240 aa16.49■□□□□ 0.23
CCDC28B-201ENST00000373602 OR5H2Q8NGV7 314 aa16.49■□□□□ 0.23
CCDC28B-201ENST00000373602 CMTM3Q96MX0 182 aa16.49■□□□□ 0.23
CCDC28B-201ENST00000373602 THAP7Q9BT49 309 aaPredicted RBP16.49■□□□□ 0.23
CCDC28B-201ENST00000373602 C19orf73Q9NVV2 129 aa16.49■□□□□ 0.23
CCDC28B-201ENST00000373602 TRAV3A0A0B4J244 114 aa16.48■□□□□ 0.23
CCDC28B-201ENST00000373602 PPP5D1E7EU14 171 aa16.48■□□□□ 0.23
CCDC28B-201ENST00000373602 NDUFB8O95169 186 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms