RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP15.05■□□□□ 07e-9■■□□□ 13.5
CLN3-204ENST00000357857 C15orf61A6NNL5 157 aa15.05■□□□□ -0
CLN3-204ENST00000357857 UPK2O00526 184 aa15.05■□□□□ -0
CLN3-204ENST00000357857 TMEM50AO95807 157 aa15.05■□□□□ -0
CLN3-204ENST00000357857 IAPPP10997 89 aa15.05■□□□□ -0
CLN3-204ENST00000357857 LGALS7P47929 136 aa15.05■□□□□ -0
CLN3-204ENST00000357857 CAV2P51636 162 aa15.05■□□□□ -0
CLN3-204ENST00000357857 PAX9P55771 341 aa15.05■□□□□ -0
CLN3-204ENST00000357857 RPL23AP62750 156 aaKnown RBP15.05■□□□□ -0
CLN3-204ENST00000357857 SSX2Q16385 188 aa15.05■□□□□ -0
CLN3-204ENST00000357857 ZNF429Q86V71 674 aa15.05■□□□□ -0
CLN3-204ENST00000357857 ARPC5LQ9BPX5 153 aa15.05■□□□□ -0
CLN3-204ENST00000357857 LYRM2Q9NU23 88 aaPredicted RBP15.05■□□□□ -0
CLN3-204ENST00000357857 CACFD1Q9UGQ2 172 aa15.05■□□□□ -0
CLN3-204ENST00000357857 CENPVL3A0A0U1RRI6 287 aa15.04■□□□□ -0
CLN3-204ENST00000357857 FAM24AA6NFZ4 105 aa15.04■□□□□ -0
CLN3-204ENST00000357857 IFNA17P01571 189 aa15.04■□□□□ -0
CLN3-204ENST00000357857 IGLV2-23P01705 113 aa15.04■□□□□ -0
CLN3-204ENST00000357857 GATA3P23771 443 aa15.04■□□□□ -0
CLN3-204ENST00000357857 CD1BP29016 333 aa15.04■□□□□ -0
CLN3-204ENST00000357857 OR52E5Q8NH55 327 aa15.04■□□□□ -0
CLN3-204ENST00000357857 VSTM2AQ8TAG5 236 aa15.04■□□□□ -0
CLN3-204ENST00000357857 CFHR4Q92496 578 aa15.04■□□□□ -0
CLN3-204ENST00000357857 PRNDQ9UKY0 176 aa15.04■□□□□ -0
CLN3-204ENST00000357857 FOXA2Q9Y261 457 aaPredicted RBP15.04■□□□□ -0
CLN3-204ENST00000357857 WSB1Q9Y6I7 421 aa15.04■□□□□ -0
CLN3-204ENST00000357857 NBPF19A0A087WUL8 3843 aa15.04■□□□□ -0
CLN3-204ENST00000357857 CEBPZOSA8MTT3 80 aa15.03■□□□□ -0
CLN3-204ENST00000357857 NPFFO15130 113 aa15.03■□□□□ -0
CLN3-204ENST00000357857 KBTBD11O94819 623 aa15.03■□□□□ -0
CLN3-204ENST00000357857 SPCS3P61009 180 aa15.03■□□□□ -0
CLN3-204ENST00000357857 HABP2Q14520 560 aaPredicted RBP15.03■□□□□ -0
CLN3-204ENST00000357857 VMA21Q3ZAQ7 101 aa15.03■□□□□ -0
CLN3-204ENST00000357857 DYNAPQ8N1N2 210 aa15.03■□□□□ -0
CLN3-204ENST00000357857 MAPK1IP1LQ8NDC0 245 aa15.03■□□□□ -0
CLN3-204ENST00000357857 C17orf50Q8WW18 174 aa15.03■□□□□ -0
CLN3-204ENST00000357857 MALSU1Q96EH3 234 aa15.03■□□□□ -0
CLN3-204ENST00000357857 RITA1Q96K30 269 aa15.03■□□□□ -0
CLN3-204ENST00000357857 SMIM8Q96KF7 97 aa15.03■□□□□ -0
CLN3-204ENST00000357857 SLC25A31Q9H0C2 315 aa15.03■□□□□ -0
CLN3-204ENST00000357857 C7orf69Q9H7B7 122 aa15.03■□□□□ -0
CLN3-204ENST00000357857 TMEM14BQ9NUH8 114 aa15.03■□□□□ -0
CLN3-204ENST00000357857 NUP50Q9UKX7 468 aa15.03■□□□□ -0
CLN3-204ENST00000357857 VENTXO95231 258 aa15.03■□□□□ -0
CLN3-204ENST00000357857 SAA4P35542 130 aa15.03■□□□□ -0
CLN3-204ENST00000357857 TAS2R30P59541 319 aa15.03■□□□□ -0
CLN3-204ENST00000357857 OR4A5Q8NH83 315 aa15.03■□□□□ -0
CLN3-204ENST00000357857 TSNAXQ99598 290 aaKnown RBP15.03■□□□□ -0
CLN3-204ENST00000357857 PSENENQ9NZ42 101 aa15.03■□□□□ -0
CLN3-204ENST00000357857 VPS13CQ709C8 3753 aa15.02■□□□□ -0
CLN3-204ENST00000357857 IGSF23A1L1A6 192 aa15.02□□□□□ -0.01
CLN3-204ENST00000357857 PAX6P26367 422 aa15.02□□□□□ -0.01
CLN3-204ENST00000357857 EWSR1Q01844 656 aaKnown RBP eCLIP15.02□□□□□ -0.01
CLN3-204ENST00000357857 PDLIM3Q53GG5 364 aaPredicted RBP15.02□□□□□ -0.01
CLN3-204ENST00000357857 SPINK9Q5DT21 86 aa15.02□□□□□ -0.01
CLN3-204ENST00000357857 SLC51BQ86UW2 128 aa15.02□□□□□ -0.01
CLN3-204ENST00000357857 TMEM252Q8N6L7 170 aa15.02□□□□□ -0.01
CLN3-204ENST00000357857 OR8H1Q8NGG4 311 aa15.02□□□□□ -0.01
CLN3-204ENST00000357857 TMEM167AQ8TBQ9 72 aa15.02□□□□□ -0.01
CLN3-204ENST00000357857 DTD1Q8TEA8 209 aa15.02□□□□□ -0.01
CLN3-204ENST00000357857 ZDHHC16Q969W1 377 aa15.02□□□□□ -0.01
CLN3-204ENST00000357857 CIB3Q96Q77 187 aaPredicted RBP15.02□□□□□ -0.01
CLN3-204ENST00000357857 RNF5Q99942 180 aa15.02□□□□□ -0.01
CLN3-204ENST00000357857 OR51B2Q9Y5P1 312 aa15.02□□□□□ -0.01
CLN3-204ENST00000357857 TNCP24821 2201 aa15.02□□□□□ -0.01
CLN3-204ENST00000357857 CSMD2Q7Z408 3487 aa15.02□□□□□ -0.01
CLN3-204ENST00000357857 TRAV40A0A0B4J280 105 aa15.01□□□□□ -0.01
CLN3-204ENST00000357857 IGHV1-69DA0A0B4J2H0 117 aa15.01□□□□□ -0.01
CLN3-204ENST00000357857 H3BP45 60 aa15.01□□□□□ -0.01
CLN3-204ENST00000357857 SLC25A17O43808 307 aa15.01□□□□□ -0.01
CLN3-204ENST00000357857 IGHV1-69P01742 117 aa15.01□□□□□ -0.01
CLN3-204ENST00000357857 AJUBAQ96IF1 538 aa15.01□□□□□ -0.01
CLN3-204ENST00000357857 ZNF471Q9BX82 626 aaPredicted RBP15.01□□□□□ -0.01
CLN3-204ENST00000357857 FKBP11Q9NYL4 201 aa15.01□□□□□ -0.01
CLN3-204ENST00000357857 TCF19Q9Y242 345 aa15.01□□□□□ -0.01
CLN3-204ENST00000357857 FLNBO75369 2602 aaKnown RBP15.01□□□□□ -0.01
CLN3-204ENST00000357857 TAAR5O14804 337 aa15□□□□□ -0.01
CLN3-204ENST00000357857 RGS13O14921 159 aa15□□□□□ -0.01
CLN3-204ENST00000357857 IGHV4-31P0DP07 118 aa15□□□□□ -0.01
CLN3-204ENST00000357857 HSPE1P61604 102 aaKnown RBP15□□□□□ -0.01
CLN3-204ENST00000357857 NHLH2Q02577 135 aa15□□□□□ -0.01
CLN3-204ENST00000357857 TMEM249Q2WGJ8 235 aa15□□□□□ -0.01
CLN3-204ENST00000357857 CLEC9AQ6UXN8 241 aa15□□□□□ -0.01
CLN3-204ENST00000357857 PIP4P2Q8N4L2 257 aa15□□□□□ -0.01
CLN3-204ENST00000357857 TEX45Q8NA69 505 aa15□□□□□ -0.01
CLN3-204ENST00000357857 BSCL2Q96G97 398 aaPredicted RBP15□□□□□ -0.01
CLN3-204ENST00000357857 FBXL17Q9UF56 701 aa15□□□□□ -0.01
CLN3-204ENST00000357857 ZNF257Q9Y2Q1 563 aa15□□□□□ -0.01
CLN3-204ENST00000357857 IGHV3OR16-10A0A075B7F0 116 aa15□□□□□ -0.01
CLN3-204ENST00000357857 IGKV1D-33P01593 117 aa15□□□□□ -0.01
CLN3-204ENST00000357857 IGKV1-33P01594 117 aa15□□□□□ -0.01
CLN3-204ENST00000357857 FGF2P09038 288 aa15□□□□□ -0.01
CLN3-204ENST00000357857 CNTFRP26992 372 aa15□□□□□ -0.01
CLN3-204ENST00000357857 RPL8P62917 257 aaKnown RBP15□□□□□ -0.01
CLN3-204ENST00000357857 TEX261Q6UWH6 196 aa15□□□□□ -0.01
CLN3-204ENST00000357857 CLCC1Q96S66 551 aa15□□□□□ -0.01
CLN3-204ENST00000357857 SMIM3Q9BZL3 60 aa15□□□□□ -0.01
CLN3-204ENST00000357857 U3KQ87 197 aa15□□□□□ -0.01
CLN3-204ENST00000357857 HECTD1Q9ULT8 2610 aa15□□□□□ -0.01
CLN3-204ENST00000357857 PRRC2AP48634 2157 aaKnown RBP14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms