RNA–Protein interactions for RNA: ENST00000340541.4

VAPA-201, Transcript of VAMP associated protein A, humanhuman

TSL 5 BASIC

Gene VAPA, Length 1,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-201ENST00000340541 TMEM68Q96MH6 324 aa11.91□□□□□ -0.5
VAPA-201ENST00000340541 OR2A7Q96R45 310 aa11.91□□□□□ -0.5
VAPA-201ENST00000340541 TINAGL1Q9GZM7 467 aaPredicted RBP11.91□□□□□ -0.5
VAPA-201ENST00000340541 NXF2Q9GZY0 626 aaKnown RBP11.91□□□□□ -0.5
VAPA-201ENST00000340541 SLA2Q9H6Q3 261 aa11.91□□□□□ -0.5
VAPA-201ENST00000340541 A0A1B0GW64 132 aa11.9□□□□□ -0.5
VAPA-201ENST00000340541 GABARAPH6UMI1 98 aa11.9□□□□□ -0.5
VAPA-201ENST00000340541 GPR31O00270 319 aa11.9□□□□□ -0.5
VAPA-201ENST00000340541 CREBL2O60519 120 aaPredicted RBP11.9□□□□□ -0.5
VAPA-201ENST00000340541 HRASP01112 189 aa11.9□□□□□ -0.5
VAPA-201ENST00000340541 TRGV3P03979 118 aa11.9□□□□□ -0.5
VAPA-201ENST00000340541 CD3DP04234 171 aa11.9□□□□□ -0.5
VAPA-201ENST00000340541 RLN1P04808 185 aa11.9□□□□□ -0.5
VAPA-201ENST00000340541 IL6RP08887 468 aaPredicted RBP11.9□□□□□ -0.5
VAPA-201ENST00000340541 LGALS1P09382 135 aaKnown RBP11.9□□□□□ -0.5
VAPA-201ENST00000340541 APELAP0DMC3 54 aa11.9□□□□□ -0.5
VAPA-201ENST00000340541 TPPP2P59282 170 aa11.9□□□□□ -0.5
VAPA-201ENST00000340541 TSPAN5P62079 268 aa11.9□□□□□ -0.5
VAPA-201ENST00000340541 POU2AF1Q16633 256 aa11.9□□□□□ -0.5
VAPA-201ENST00000340541 OR4A47Q6IF82 309 aa11.9□□□□□ -0.5
VAPA-201ENST00000340541 ADAD2Q8NCV1 583 aaKnown RBP11.9□□□□□ -0.5
VAPA-201ENST00000340541 OR1N2Q8NGR9 330 aa11.9□□□□□ -0.5
VAPA-201ENST00000340541 VSTM2AQ8TAG5 236 aa11.9□□□□□ -0.5
VAPA-201ENST00000340541 FCAMRQ8WWV6 532 aa11.9□□□□□ -0.5
VAPA-201ENST00000340541 RSRP1Q9BUV0 290 aa11.9□□□□□ -0.5
VAPA-201ENST00000340541 WI2-2373I1.2A0A1W2PRP0 233 aa11.89□□□□□ -0.51
VAPA-201ENST00000340541 E7EUB6 86 aa11.89□□□□□ -0.51
VAPA-201ENST00000340541 RBMXL2O75526 392 aaKnown RBP11.89□□□□□ -0.51
VAPA-201ENST00000340541 S1PR2O95136 353 aa11.89□□□□□ -0.51
VAPA-201ENST00000340541 HPRT1P00492 218 aa11.89□□□□□ -0.51
VAPA-201ENST00000340541 CD74P04233 296 aa11.89□□□□□ -0.51
VAPA-201ENST00000340541 UCP3P55916 312 aa11.89□□□□□ -0.51
VAPA-201ENST00000340541 TAS2R31P59538 309 aa11.89□□□□□ -0.51
VAPA-201ENST00000340541 SSX9Q7RTT3 188 aa11.89□□□□□ -0.51
VAPA-201ENST00000340541 LHFPL1Q86WI0 220 aa11.89□□□□□ -0.51
VAPA-201ENST00000340541 OR4D10Q8NGI6 311 aa11.89□□□□□ -0.51
VAPA-201ENST00000340541 DIRAS2Q96HU8 199 aa11.89□□□□□ -0.51
VAPA-201ENST00000340541 C6orf62Q9GZU0 229 aaPredicted RBP11.89□□□□□ -0.51
VAPA-201ENST00000340541 PLEKHA2Q9HB19 425 aa11.89□□□□□ -0.51
VAPA-201ENST00000340541 BET1LQ9NYM9 111 aa11.89□□□□□ -0.51
VAPA-201ENST00000340541 TEX22C9J3V5 150 aa11.88□□□□□ -0.51
VAPA-201ENST00000340541 CTDSPLO15194 276 aa11.88□□□□□ -0.51
VAPA-201ENST00000340541 IGHV3-11P01762 117 aa11.88□□□□□ -0.51
VAPA-201ENST00000340541 TBPP20226 339 aa11.88□□□□□ -0.51
VAPA-201ENST00000340541 F2RP25116 425 aa11.88□□□□□ -0.51
VAPA-201ENST00000340541 CD40LGP29965 261 aa11.88□□□□□ -0.51
VAPA-201ENST00000340541 MAS1LP35410 378 aa11.88□□□□□ -0.51
VAPA-201ENST00000340541 RAB25P57735 213 aa11.88□□□□□ -0.51
VAPA-201ENST00000340541 MRPS10P82664 201 aaKnown RBP11.88□□□□□ -0.51
VAPA-201ENST00000340541 ZNF616Q08AN1 781 aa11.88□□□□□ -0.51
VAPA-201ENST00000340541 ZNF585BQ52M93 769 aa11.88□□□□□ -0.51
VAPA-201ENST00000340541 RNASE10Q5GAN6 216 aaKnown RBP11.88□□□□□ -0.51
VAPA-201ENST00000340541 CMTM1Q8IZ96 169 aa11.88□□□□□ -0.51
VAPA-201ENST00000340541 ARRDC1Q8N5I2 433 aa11.88□□□□□ -0.51
VAPA-201ENST00000340541 TMEM229BQ8NBD8 167 aa11.88□□□□□ -0.51
VAPA-201ENST00000340541 MCFD2Q8NI22 146 aa11.88□□□□□ -0.51
VAPA-201ENST00000340541 CD300LFQ8TDQ1 290 aa11.88□□□□□ -0.51
VAPA-201ENST00000340541 SMIM4Q8WVI0 70 aa11.88□□□□□ -0.51
VAPA-201ENST00000340541 DGCR14Q96DF8 476 aaKnown RBP11.88□□□□□ -0.51
VAPA-201ENST00000340541 PHB2Q99623 299 aa11.88□□□□□ -0.51
VAPA-201ENST00000340541 SPIN2AQ99865 258 aa11.88□□□□□ -0.51
VAPA-201ENST00000340541 B9D2Q9BPU9 175 aa11.88□□□□□ -0.51
VAPA-201ENST00000340541 SPIN2BQ9BPZ2 258 aa11.88□□□□□ -0.51
VAPA-201ENST00000340541 SOSTQ9BQB4 213 aa11.88□□□□□ -0.51
VAPA-201ENST00000340541 COMMD9Q9P000 198 aa11.88□□□□□ -0.51
VAPA-201ENST00000340541 NBEAL2Q6ZNJ1 2754 aa11.87□□□□□ -0.51
VAPA-201ENST00000340541 IGHV4OR15-8A0A075B7B6 117 aa11.87□□□□□ -0.51
VAPA-201ENST00000340541 A0A087WW49 117 aa11.87□□□□□ -0.51
VAPA-201ENST00000340541 TRAV3A0A0B4J244 114 aa11.87□□□□□ -0.51
VAPA-201ENST00000340541 CGB1A6NKQ9 187 aa11.87□□□□□ -0.51
VAPA-201ENST00000340541 ACTL6BO94805 426 aa11.87□□□□□ -0.51
VAPA-201ENST00000340541 OR8U8P0C7N1 319 aa11.87□□□□□ -0.51
VAPA-201ENST00000340541 OR9G9P0C7N8 305 aa11.87□□□□□ -0.51
VAPA-201ENST00000340541 ZNF735P0CB33 412 aa11.87□□□□□ -0.51
VAPA-201ENST00000340541 MYOD1P15172 320 aa11.87□□□□□ -0.51
VAPA-201ENST00000340541 NQO2P16083 231 aa11.87□□□□□ -0.51
VAPA-201ENST00000340541 TNFSF8P32971 234 aa11.87□□□□□ -0.51
VAPA-201ENST00000340541 RPL8P62917 257 aaKnown RBP11.87□□□□□ -0.51
VAPA-201ENST00000340541 DEFA5Q01523 94 aa11.87□□□□□ -0.51
VAPA-201ENST00000340541 SSBP1Q04837 148 aaKnown RBP11.87□□□□□ -0.51
VAPA-201ENST00000340541 PHLDA2Q53GA4 152 aa11.87□□□□□ -0.51
VAPA-201ENST00000340541 LPCAT3Q6P1A2 487 aa11.87□□□□□ -0.51
VAPA-201ENST00000340541 TTC9CQ8N5M4 171 aa11.87□□□□□ -0.51
VAPA-201ENST00000340541 OR4A5Q8NH83 315 aa11.87□□□□□ -0.51
VAPA-201ENST00000340541 AIFM2Q9BRQ8 373 aa11.87□□□□□ -0.51
VAPA-201ENST00000340541 ZNF355PQ9NSJ1 428 aa11.87□□□□□ -0.51
VAPA-201ENST00000340541 HMX3A6NHT5 357 aa11.86□□□□□ -0.51
VAPA-201ENST00000340541 UPK2O00526 184 aa11.86□□□□□ -0.51
VAPA-201ENST00000340541 HLA-GP17693 338 aa11.86□□□□□ -0.51
VAPA-201ENST00000340541 HOXD3P31249 432 aaPredicted RBP11.86□□□□□ -0.51
VAPA-201ENST00000340541 LPAR6P43657 344 aa11.86□□□□□ -0.51
VAPA-201ENST00000340541 RPL27AP46776 148 aaKnown RBP11.86□□□□□ -0.51
VAPA-201ENST00000340541 TAS2R19P59542 299 aa11.86□□□□□ -0.51
VAPA-201ENST00000340541 ZNF45Q02386 682 aa11.86□□□□□ -0.51
VAPA-201ENST00000340541 CD69Q07108 199 aa11.86□□□□□ -0.51
VAPA-201ENST00000340541 IL18Q14116 193 aa11.86□□□□□ -0.51
VAPA-201ENST00000340541 SLC38A6Q8IZM9 456 aa11.86□□□□□ -0.51
VAPA-201ENST00000340541 MRGPRFQ96AM1 343 aa11.86□□□□□ -0.51
VAPA-201ENST00000340541 TMEM140Q9NV12 185 aa11.86□□□□□ -0.51
VAPA-201ENST00000340541 COA4Q9NYJ1 87 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms