RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 CRIP2P52943 208 aaPredicted RBP12.46□□□□□ -0.42
CCDC28A-201ENST00000332797 ZNF45Q02386 682 aa12.46□□□□□ -0.42
CCDC28A-201ENST00000332797 TMEM267Q0VDI3 215 aaPredicted RBP12.46□□□□□ -0.42
CCDC28A-201ENST00000332797 FOXE3Q13461 319 aa12.46□□□□□ -0.42
CCDC28A-201ENST00000332797 BAK1Q16611 211 aa12.46□□□□□ -0.42
CCDC28A-201ENST00000332797 ZNF585BQ52M93 769 aa12.46□□□□□ -0.42
CCDC28A-201ENST00000332797 CXorf66Q5JRM2 361 aaPredicted RBP12.46□□□□□ -0.42
CCDC28A-201ENST00000332797 OR4A47Q6IF82 309 aa12.46□□□□□ -0.42
CCDC28A-201ENST00000332797 UNQ5815/PRO19632Q6UWF5 114 aa12.46□□□□□ -0.42
CCDC28A-201ENST00000332797 LCNL1Q6ZST4 164 aa12.46□□□□□ -0.42
CCDC28A-201ENST00000332797 MMD2Q8IY49 270 aa12.46□□□□□ -0.42
CCDC28A-201ENST00000332797 CCDC71LQ8N9Z2 235 aa12.46□□□□□ -0.42
CCDC28A-201ENST00000332797 LFNGQ8NES3 379 aa12.46□□□□□ -0.42
CCDC28A-201ENST00000332797 DMBX1Q8NFW5 382 aa12.46□□□□□ -0.42
CCDC28A-201ENST00000332797 R3HDM4Q96D70 268 aa12.46□□□□□ -0.42
CCDC28A-201ENST00000332797 SDHCQ99643 169 aaPredicted RBP12.46□□□□□ -0.42
CCDC28A-201ENST00000332797 TRRAPQ9Y4A5 3859 aa12.45□□□□□ -0.42
CCDC28A-201ENST00000332797 ADARB2-AS1A8MUL3 147 aa12.45□□□□□ -0.42
CCDC28A-201ENST00000332797 PLXNB1O43157 2135 aa12.45□□□□□ -0.42
CCDC28A-201ENST00000332797 IGHG4P01861 327 aa12.45□□□□□ -0.42
CCDC28A-201ENST00000332797 PPIFP30405 207 aaKnown RBP12.45□□□□□ -0.42
CCDC28A-201ENST00000332797 ERVK-16P61578 105 aa12.45□□□□□ -0.42
CCDC28A-201ENST00000332797 SURF2Q15527 256 aaPredicted RBP12.45□□□□□ -0.42
CCDC28A-201ENST00000332797 C19orf54Q5BKX5 351 aa12.45□□□□□ -0.42
CCDC28A-201ENST00000332797 MINDY2Q8NBR6 621 aa12.45□□□□□ -0.42
CCDC28A-201ENST00000332797 TMEM167AQ8TBQ9 72 aa12.45□□□□□ -0.42
CCDC28A-201ENST00000332797 PHB2Q99623 299 aa12.45□□□□□ -0.42
CCDC28A-201ENST00000332797 NUBP2Q9Y5Y2 271 aa12.45□□□□□ -0.42
CCDC28A-201ENST00000332797 VWFP04275 2813 aa12.44□□□□□ -0.42
CCDC28A-201ENST00000332797 RPLP1P05386 114 aaKnown RBP12.44□□□□□ -0.42
CCDC28A-201ENST00000332797 ELANEP08246 267 aa12.44□□□□□ -0.42
CCDC28A-201ENST00000332797 POU2AF1Q16633 256 aa12.44□□□□□ -0.42
CCDC28A-201ENST00000332797 PRR31Q5SQ13 230 aa12.44□□□□□ -0.42
CCDC28A-201ENST00000332797 C10orf55Q5SWW7 151 aa12.44□□□□□ -0.42
CCDC28A-201ENST00000332797 SRSF12Q8WXF0 261 aaKnown RBP12.44□□□□□ -0.42
CCDC28A-201ENST00000332797 RTBDNQ9BSG5 229 aaPredicted RBP12.44□□□□□ -0.42
CCDC28A-201ENST00000332797 C5orf66Q9H5L9 145 aa12.44□□□□□ -0.42
CCDC28A-201ENST00000332797 AKIP1Q9NQ31 210 aa12.44□□□□□ -0.42
CCDC28A-201ENST00000332797 TMEM140Q9NV12 185 aa12.44□□□□□ -0.42
CCDC28A-201ENST00000332797 BET1LQ9NYM9 111 aa12.44□□□□□ -0.42
CCDC28A-201ENST00000332797 FOXA2Q9Y261 457 aaPredicted RBP12.44□□□□□ -0.42
CCDC28A-201ENST00000332797 C3orf85A0A1B0GTC6 90 aa12.43□□□□□ -0.42
CCDC28A-201ENST00000332797 MARCH11A6NNE9 402 aa12.43□□□□□ -0.42
CCDC28A-201ENST00000332797 H0Y980 276 aa12.43□□□□□ -0.42
CCDC28A-201ENST00000332797 KRASP01116 189 aa12.43□□□□□ -0.42
CCDC28A-201ENST00000332797 IGLV1-40P01703 118 aa12.43□□□□□ -0.42
CCDC28A-201ENST00000332797 SERPINE2P07093 398 aa12.43□□□□□ -0.42
CCDC28A-201ENST00000332797 APELAP0DMC3 54 aa12.43□□□□□ -0.42
CCDC28A-201ENST00000332797 PF4V1P10720 104 aa12.43□□□□□ -0.42
CCDC28A-201ENST00000332797 PSMB8P28062 276 aa12.43□□□□□ -0.42
CCDC28A-201ENST00000332797 G6PCP35575 357 aa12.43□□□□□ -0.42
CCDC28A-201ENST00000332797 RPL23AP62750 156 aaKnown RBP12.43□□□□□ -0.42
CCDC28A-201ENST00000332797 AKIRIN2Q53H80 203 aa12.43□□□□□ -0.42
CCDC28A-201ENST00000332797 TMEM65Q6PI78 240 aa12.43□□□□□ -0.42
CCDC28A-201ENST00000332797 OR4A5Q8NH83 315 aa12.43□□□□□ -0.42
CCDC28A-201ENST00000332797 FAM110DQ8TAY7 271 aaPredicted RBP12.43□□□□□ -0.42
CCDC28A-201ENST00000332797 DEDD2Q8WXF8 326 aa12.43□□□□□ -0.42
CCDC28A-201ENST00000332797 TP53RKQ96S44 253 aa12.43□□□□□ -0.42
CCDC28A-201ENST00000332797 FAM212BQ9NTI7 297 aaPredicted RBP12.43□□□□□ -0.42
CCDC28A-201ENST00000332797 GPR132Q9UNW8 380 aa12.43□□□□□ -0.42
CCDC28A-201ENST00000332797 PKD1L1Q8TDX9 2849 aa12.43□□□□□ -0.42
CCDC28A-201ENST00000332797 LINC00854A0A1B0GVQ3 168 aa12.42□□□□□ -0.42
CCDC28A-201ENST00000332797 MSGN1A6NI15 193 aa12.42□□□□□ -0.42
CCDC28A-201ENST00000332797 SOX15O60248 233 aa12.42□□□□□ -0.42
CCDC28A-201ENST00000332797 IL7P13232 177 aa12.42□□□□□ -0.42
CCDC28A-201ENST00000332797 MAS1LP35410 378 aa12.42□□□□□ -0.42
CCDC28A-201ENST00000332797 RPL8P62917 257 aaKnown RBP12.42□□□□□ -0.42
CCDC28A-201ENST00000332797 RNF152Q8N8N0 203 aa12.42□□□□□ -0.42
CCDC28A-201ENST00000332797 CASTOR1Q8WTX7 329 aa12.42□□□□□ -0.42
CCDC28A-201ENST00000332797 SCGB3A2Q96PL1 93 aa12.42□□□□□ -0.42
CCDC28A-201ENST00000332797 TSC22D3Q99576 134 aa12.42□□□□□ -0.42
CCDC28A-201ENST00000332797 KLK15Q9H2R5 256 aa12.42□□□□□ -0.42
CCDC28A-201ENST00000332797 ZFP57Q9NU63 452 aa12.42□□□□□ -0.42
CCDC28A-201ENST00000332797 VSIG4Q9Y279 399 aa12.42□□□□□ -0.42
CCDC28A-201ENST00000332797 TRAV3A0A0B4J244 114 aa12.41□□□□□ -0.42
CCDC28A-201ENST00000332797 TEX13DA0A0J9YY54 714 aaPredicted RBP12.41□□□□□ -0.42
CCDC28A-201ENST00000332797 NUDT19A8MXV4 375 aa12.41□□□□□ -0.42
CCDC28A-201ENST00000332797 UPK2O00526 184 aa12.41□□□□□ -0.42
CCDC28A-201ENST00000332797 MYOD1P15172 320 aa12.41□□□□□ -0.42
CCDC28A-201ENST00000332797 HLA-GP17693 338 aa12.41□□□□□ -0.42
CCDC28A-201ENST00000332797 SP6Q3SY56 376 aa12.41□□□□□ -0.42
CCDC28A-201ENST00000332797 ASPHD1Q5U4P2 390 aa12.41□□□□□ -0.42
CCDC28A-201ENST00000332797 TREML4Q6UXN2 200 aa12.41□□□□□ -0.42
CCDC28A-201ENST00000332797 C18orf65Q6ZTR6 163 aa12.41□□□□□ -0.42
CCDC28A-201ENST00000332797 KLHL30-AS1Q8NEE0 82 aa12.41□□□□□ -0.42
CCDC28A-201ENST00000332797 OR4F17Q8NGA8 305 aa12.41□□□□□ -0.42
CCDC28A-201ENST00000332797 OR5M8Q8NGP6 311 aa12.41□□□□□ -0.42
CCDC28A-201ENST00000332797 OR4F4Q96R69 305 aa12.41□□□□□ -0.42
CCDC28A-201ENST00000332797 IGKV1-39P01597 117 aa12.4□□□□□ -0.42
CCDC28A-201ENST00000332797 IGKV1D-39P04432 117 aa12.4□□□□□ -0.42
CCDC28A-201ENST00000332797 RPL27AP46776 148 aaKnown RBP12.4□□□□□ -0.42
CCDC28A-201ENST00000332797 ADAD2Q8NCV1 583 aaKnown RBP12.4□□□□□ -0.42
CCDC28A-201ENST00000332797 OR5T1Q8NG75 326 aa12.4□□□□□ -0.42
CCDC28A-201ENST00000332797 S100ZQ8WXG8 99 aa12.4□□□□□ -0.42
CCDC28A-201ENST00000332797 TMEM68Q96MH6 324 aa12.4□□□□□ -0.42
CCDC28A-201ENST00000332797 FYTTD1Q96QD9 318 aaKnown RBP12.4□□□□□ -0.42
CCDC28A-201ENST00000332797 SPIN2AQ99865 258 aa12.4□□□□□ -0.42
CCDC28A-201ENST00000332797 SPIN2BQ9BPZ2 258 aa12.4□□□□□ -0.42
CCDC28A-201ENST00000332797 NAA60Q9H7X0 242 aa12.4□□□□□ -0.42
CCDC28A-201ENST00000332797 ZNF355PQ9NSJ1 428 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms