RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 RNASEH2CQ8TDP1 164 aaKnown RBP6.81□□□□□ -1.32
CIITA-201ENST00000324288 DUX5Q96PT3 197 aa6.81□□□□□ -1.32
CIITA-201ENST00000324288 CCL27Q9Y4X3 112 aa6.81□□□□□ -1.32
CIITA-201ENST00000324288 OR4A5Q8NH83 315 aa6.81□□□□□ -1.32
CIITA-201ENST00000324288 CDC42EP3Q9UKI2 254 aa6.81□□□□□ -1.32
CIITA-201ENST00000324288 LOC101059948A0A1B0GTJ6 334 aa6.81□□□□□ -1.32
CIITA-201ENST00000324288 HTN3P15516 51 aa6.81□□□□□ -1.32
CIITA-201ENST00000324288 ATG4DQ86TL0 474 aaPredicted RBP6.81□□□□□ -1.32
CIITA-201ENST00000324288 GPR82Q96P67 336 aa6.81□□□□□ -1.32
CIITA-201ENST00000324288 ZNF430Q9H8G1 570 aaPredicted RBP6.81□□□□□ -1.32
CIITA-201ENST00000324288 CISD1Q9NZ45 108 aaKnown RBP6.81□□□□□ -1.32
CIITA-201ENST00000324288 NYNRINQ9P2P1 1898 aaKnown RBP6.81□□□□□ -1.32
CIITA-201ENST00000324288 GAPDHP04406 335 aaKnown RBP6.81□□□□□ -1.32
CIITA-201ENST00000324288 RAC3P60763 192 aa6.81□□□□□ -1.32
CIITA-201ENST00000324288 LCN2P80188 198 aa6.81□□□□□ -1.32
CIITA-201ENST00000324288 TMEM170BQ5T4T1 132 aa6.81□□□□□ -1.32
CIITA-201ENST00000324288 PLAC1Q9HBJ0 212 aa6.81□□□□□ -1.32
CIITA-201ENST00000324288 CIRBPQ14011 172 aaKnown RBP6.8□□□□□ -1.32
CIITA-201ENST00000324288 GFI1BQ5VTD9 330 aa6.8□□□□□ -1.32
CIITA-201ENST00000324288 TAF15Q92804 592 aaKnown RBP eCLIP6.8□□□□□ -1.32
CIITA-201ENST00000324288 LSM4Q9Y4Z0 139 aaKnown RBP6.8□□□□□ -1.32
CIITA-201ENST00000324288 UPK3AO75631 287 aa6.8□□□□□ -1.32
CIITA-201ENST00000324288 PEX11BO96011 259 aa6.8□□□□□ -1.32
CIITA-201ENST00000324288 OR5AN1Q8NGI8 311 aa6.8□□□□□ -1.32
CIITA-201ENST00000324288 C9JCJ5 164 aa6.8□□□□□ -1.32
CIITA-201ENST00000324288 SNAI3Q3KNW1 292 aa6.8□□□□□ -1.32
CIITA-201ENST00000324288 UNQ5815/PRO19632Q6UWF5 114 aa6.8□□□□□ -1.32
CIITA-201ENST00000324288 SELENOHQ8IZQ5 122 aaKnown RBP6.8□□□□□ -1.32
CIITA-201ENST00000324288 HEXA-AS1Q9H8Q6 139 aa6.8□□□□□ -1.32
CIITA-201ENST00000324288 ELOVL5Q9NYP7 299 aa6.8□□□□□ -1.32
CIITA-201ENST00000324288 ZNF462Q96JM2 2506 aa6.8□□□□□ -1.32
CIITA-201ENST00000324288 C7orf66A4D0T2 115 aa6.8□□□□□ -1.32
CIITA-201ENST00000324288 H3BUT2 72 aa6.8□□□□□ -1.32
CIITA-201ENST00000324288 SPINT1O43278 529 aa6.8□□□□□ -1.32
CIITA-201ENST00000324288 PRDX2P32119 198 aa6.8□□□□□ -1.32
CIITA-201ENST00000324288 ZNF714Q96N38 554 aa6.8□□□□□ -1.32
CIITA-201ENST00000324288 JKAMPQ9P055 326 aa6.8□□□□□ -1.32
CIITA-201ENST00000324288 DTX4Q9Y2E6 619 aa6.8□□□□□ -1.32
CIITA-201ENST00000324288 TMEM56-RWDD3S4R434 201 aa6.8□□□□□ -1.32
CIITA-201ENST00000324288 RALGAPA2Q2PPJ7 1873 aa6.8□□□□□ -1.32
CIITA-201ENST00000324288 WNK3Q9BYP7 1800 aa6.8□□□□□ -1.32
CIITA-201ENST00000324288 TNFSF10P50591 281 aa6.8□□□□□ -1.32
CIITA-201ENST00000324288 POC1AQ8NBT0 407 aa6.8□□□□□ -1.32
CIITA-201ENST00000324288 DDB2Q92466 427 aa6.8□□□□□ -1.32
CIITA-201ENST00000324288 QTRT1Q9BXR0 403 aaKnown RBP6.8□□□□□ -1.32
CIITA-201ENST00000324288 J3QT63 122 aa6.8□□□□□ -1.32
CIITA-201ENST00000324288 LDLRAD2Q5SZI1 272 aa6.8□□□□□ -1.32
CIITA-201ENST00000324288 NPFFR1Q9GZQ6 430 aa6.8□□□□□ -1.32
CIITA-201ENST00000324288 PSME4Q14997 1843 aa6.8□□□□□ -1.32
CIITA-201ENST00000324288 CISD3P0C7P0 127 aa6.8□□□□□ -1.32
CIITA-201ENST00000324288 RPL34P49207 117 aaKnown RBP6.8□□□□□ -1.32
CIITA-201ENST00000324288 ZNF124Q15973 351 aa6.8□□□□□ -1.32
CIITA-201ENST00000324288 HLA-DQA1P01909 254 aa6.8□□□□□ -1.32
CIITA-201ENST00000324288 MT-ND6P03923 174 aa6.8□□□□□ -1.32
CIITA-201ENST00000324288 DEGS2Q6QHC5 323 aa6.8□□□□□ -1.32
CIITA-201ENST00000324288 MTURNQ8N3F0 131 aa6.8□□□□□ -1.32
CIITA-201ENST00000324288 C9orf40Q8IXQ3 194 aa6.8□□□□□ -1.32
CIITA-201ENST00000324288 STPG3Q8N7X2 389 aa6.8□□□□□ -1.32
CIITA-201ENST00000324288 TET2Q6N021 2002 aaPredicted RBP6.8□□□□□ -1.32
CIITA-201ENST00000324288 COX6B1P14854 86 aa6.8□□□□□ -1.32
CIITA-201ENST00000324288 TCF20Q9UGU0 1960 aaKnown RBP6.79□□□□□ -1.32
CIITA-201ENST00000324288 IGKV3D-20A0A0C4DH25 116 aa6.79□□□□□ -1.32
CIITA-201ENST00000324288 CXCL10P02778 98 aa6.79□□□□□ -1.32
CIITA-201ENST00000324288 ZNF708P17019 499 aa6.79□□□□□ -1.32
CIITA-201ENST00000324288 AQP10Q96PS8 301 aa6.79□□□□□ -1.32
CIITA-201ENST00000324288 NRN1Q9NPD7 142 aa6.79□□□□□ -1.32
CIITA-201ENST00000324288 MYO9AB2RTY4 2548 aa6.79□□□□□ -1.32
CIITA-201ENST00000324288 H0Y980 276 aa6.79□□□□□ -1.32
CIITA-201ENST00000324288 APOHP02749 345 aaPredicted RBP6.79□□□□□ -1.32
CIITA-201ENST00000324288 ASAH2BP0C7U1 165 aa6.79□□□□□ -1.32
CIITA-201ENST00000324288 SUMO2P61956 95 aaKnown RBP6.79□□□□□ -1.32
CIITA-201ENST00000324288 ASCL5Q7RTU5 278 aa6.79□□□□□ -1.32
CIITA-201ENST00000324288 SLC25A38Q96DW6 304 aa6.79□□□□□ -1.32
CIITA-201ENST00000324288 ZNF385AQ96PM9 386 aaKnown RBP6.79□□□□□ -1.32
CIITA-201ENST00000324288 SAA1P0DJI8 122 aaPredicted RBP6.79□□□□□ -1.32
CIITA-201ENST00000324288 PEAR1Q5VY43 1037 aaPredicted RBP6.79□□□□□ -1.32
CIITA-201ENST00000324288 IGHV3OR16-8A0A075B7F1 116 aa6.79□□□□□ -1.32
CIITA-201ENST00000324288 MPTX1A8MV57 137 aa6.79□□□□□ -1.32
CIITA-201ENST00000324288 SERF2P84101 59 aa6.79□□□□□ -1.32
CIITA-201ENST00000324288 TMEM171Q8WVE6 324 aa6.79□□□□□ -1.32
CIITA-201ENST00000324288 ZNF815PA8K554 130 aa6.79□□□□□ -1.32
CIITA-201ENST00000324288 GPX1P07203 203 aa6.79□□□□□ -1.32
CIITA-201ENST00000324288 C19orf48Q6RUI8 117 aa6.79□□□□□ -1.32
CIITA-201ENST00000324288 TEX29Q8N6K0 151 aa6.79□□□□□ -1.32
CIITA-201ENST00000324288 DCTN5Q9BTE1 182 aa6.79□□□□□ -1.32
CIITA-201ENST00000324288 C11orf68Q9H3H3 251 aaKnown RBP6.79□□□□□ -1.32
CIITA-201ENST00000324288 PAPPA2Q9BXP8 1791 aa6.79□□□□□ -1.32
CIITA-201ENST00000324288 TMEM229AB2RXF0 380 aa6.79□□□□□ -1.32
CIITA-201ENST00000324288 MOSP00540 346 aa6.79□□□□□ -1.32
CIITA-201ENST00000324288 HOXC4P09017 264 aaPredicted RBP6.79□□□□□ -1.32
CIITA-201ENST00000324288 PRB3Q04118 309 aaPredicted RBP6.79□□□□□ -1.32
CIITA-201ENST00000324288 TFF3Q07654 80 aa6.79□□□□□ -1.32
CIITA-201ENST00000324288 hCG_38984A0A1B0GV85 526 aa6.79□□□□□ -1.32
CIITA-201ENST00000324288 LIFP15018 202 aa6.79□□□□□ -1.32
CIITA-201ENST00000324288 GPR183P32249 361 aa6.79□□□□□ -1.32
CIITA-201ENST00000324288 ASCL4Q6XD76 172 aa6.79□□□□□ -1.32
CIITA-201ENST00000324288 BGLAPP02818 100 aa6.79□□□□□ -1.32
CIITA-201ENST00000324288 SRSF3P84103 164 aaKnown RBP6.79□□□□□ -1.32
CIITA-201ENST00000324288 ITLN1Q8WWA0 313 aa6.79□□□□□ -1.32
CIITA-201ENST00000324288 SBF2Q86WG5 1849 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms