RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 SSTR5P35346 364 aa9.82□□□□□ -0.84
VPS39-201ENST00000318006 ZNF324BQ6AW86 544 aaPredicted RBP9.82□□□□□ -0.84
VPS39-201ENST00000318006 ZNF430Q9H8G1 570 aaPredicted RBP9.82□□□□□ -0.84
VPS39-201ENST00000318006 NRN1Q9NPD7 142 aa9.82□□□□□ -0.84
VPS39-201ENST00000318006 OR2H2O95918 312 aa9.82□□□□□ -0.84
VPS39-201ENST00000318006 SP9P0CG40 484 aa9.82□□□□□ -0.84
VPS39-201ENST00000318006 BEND2Q8NDZ0 799 aa9.82□□□□□ -0.84
VPS39-201ENST00000318006 ST6GALNAC6Q969X2 333 aa9.82□□□□□ -0.84
VPS39-201ENST00000318006 C2orf88Q9BSF0 95 aa9.82□□□□□ -0.84
VPS39-201ENST00000318006 FOXD3Q9UJU5 478 aaPredicted RBP9.82□□□□□ -0.84
VPS39-201ENST00000318006 GREB1Q4ZG55 1949 aa9.82□□□□□ -0.84
VPS39-201ENST00000318006 A0A1B0GWB2 263 aa9.81□□□□□ -0.84
VPS39-201ENST00000318006 TGFBR3LH3BV60 316 aa9.81□□□□□ -0.84
VPS39-201ENST00000318006 NKX2-8O15522 239 aa9.81□□□□□ -0.84
VPS39-201ENST00000318006 IGHMP01871 453 aa9.81□□□□□ -0.84
VPS39-201ENST00000318006 TCF24Q7RTU0 167 aa9.81□□□□□ -0.84
VPS39-201ENST00000318006 RAB1CQ92928 201 aa9.81□□□□□ -0.84
VPS39-201ENST00000318006 RAB1BQ9H0U4 201 aa9.81□□□□□ -0.84
VPS39-201ENST00000318006 SCN2AQ99250 2005 aa9.81□□□□□ -0.84
VPS39-201ENST00000318006 SLC17A3O00476 420 aa9.81□□□□□ -0.84
VPS39-201ENST00000318006 DLL1O00548 723 aa9.81□□□□□ -0.84
VPS39-201ENST00000318006 SCGB1A1P11684 91 aa9.81□□□□□ -0.84
VPS39-201ENST00000318006 GPX4P36969 197 aaPredicted RBP9.81□□□□□ -0.84
VPS39-201ENST00000318006 KCNMB1Q16558 191 aa9.81□□□□□ -0.84
VPS39-201ENST00000318006 LDLRAD2Q5SZI1 272 aa9.81□□□□□ -0.84
VPS39-201ENST00000318006 ZNF788Q6ZQV5 615 aa9.81□□□□□ -0.84
VPS39-201ENST00000318006 DLL3Q9NYJ7 618 aa9.81□□□□□ -0.84
VPS39-201ENST00000318006 SCN5AQ14524 2016 aa9.81□□□□□ -0.84
VPS39-201ENST00000318006 ABCA7Q8IZY2 2146 aa9.81□□□□□ -0.84
VPS39-201ENST00000318006 C7orf71A4D174 169 aa9.81□□□□□ -0.84
VPS39-201ENST00000318006 MARCH11A6NNE9 402 aa9.81□□□□□ -0.84
VPS39-201ENST00000318006 H0YIZ8 118 aa9.81□□□□□ -0.84
VPS39-201ENST00000318006 C16orf97H3BN30 126 aa9.81□□□□□ -0.84
VPS39-201ENST00000318006 ADRA2AP08913 450 aa9.81□□□□□ -0.84
VPS39-201ENST00000318006 HSPE1P61604 102 aaKnown RBP9.81□□□□□ -0.84
VPS39-201ENST00000318006 SAXO1Q8IYX7 474 aa9.81□□□□□ -0.84
VPS39-201ENST00000318006 ZNF414Q96IQ9 312 aa9.81□□□□□ -0.84
VPS39-201ENST00000318006 GDF9O60383 454 aa9.81□□□□□ -0.84
VPS39-201ENST00000318006 FOXA3P55318 350 aaPredicted RBP9.81□□□□□ -0.84
VPS39-201ENST00000318006 ASPHD2Q6ICH7 369 aa9.81□□□□□ -0.84
VPS39-201ENST00000318006 SRSF12Q8WXF0 261 aaKnown RBP9.81□□□□□ -0.84
VPS39-201ENST00000318006 JKAMPQ9P055 326 aa9.81□□□□□ -0.84
VPS39-201ENST00000318006 MGST3O14880 152 aa9.8□□□□□ -0.84
VPS39-201ENST00000318006 PLAUP00749 431 aa9.8□□□□□ -0.84
VPS39-201ENST00000318006 PRDX2P32119 198 aa9.8□□□□□ -0.84
VPS39-201ENST00000318006 ZNF658BQ4V348 819 aaPredicted RBP9.8□□□□□ -0.84
VPS39-201ENST00000318006 C1orf174Q8IYL3 243 aa9.8□□□□□ -0.84
VPS39-201ENST00000318006 NABP2Q9BQ15 211 aa9.8□□□□□ -0.84
VPS39-201ENST00000318006 NPCDR1Q9BY65 106 aa9.8□□□□□ -0.84
VPS39-201ENST00000318006 ZNF646O15015 1829 aaPredicted RBP9.8□□□□□ -0.84
VPS39-201ENST00000318006 A0A1W2PPE3 182 aa9.8□□□□□ -0.84
VPS39-201ENST00000318006 RPS20P60866 119 aaKnown RBP9.8□□□□□ -0.84
VPS39-201ENST00000318006 KRTCAP3Q53RY4 240 aa9.8□□□□□ -0.84
VPS39-201ENST00000318006 C2orf83Q53S99 150 aa9.8□□□□□ -0.84
VPS39-201ENST00000318006 NEUROG1Q92886 237 aa9.8□□□□□ -0.84
VPS39-201ENST00000318006 MRPL32Q9BYC8 188 aaKnown RBP9.8□□□□□ -0.84
VPS39-201ENST00000318006 PLSCR2Q9NRY7 297 aa9.8□□□□□ -0.84
VPS39-201ENST00000318006 FAM157AC9JC47 383 aa9.8□□□□□ -0.84
VPS39-201ENST00000318006 STAG3L3P0CL85 134 aa9.8□□□□□ -0.84
VPS39-201ENST00000318006 UCP1P25874 307 aa9.8□□□□□ -0.84
VPS39-201ENST00000318006 LGALS7P47929 136 aa9.8□□□□□ -0.84
VPS39-201ENST00000318006 UCP2P55851 309 aa9.8□□□□□ -0.84
VPS39-201ENST00000318006 ADIPOQQ15848 244 aa9.8□□□□□ -0.84
VPS39-201ENST00000318006 TTC9CQ8N5M4 171 aa9.8□□□□□ -0.84
VPS39-201ENST00000318006 FAM169BQ8N8A8 192 aa9.8□□□□□ -0.84
VPS39-201ENST00000318006 ANKRD36A6QL64 1941 aa9.8□□□□□ -0.84
VPS39-201ENST00000318006 GOLGB1Q14789 3259 aaKnown RBP9.8□□□□□ -0.84
VPS39-201ENST00000318006 TRBV24-1A0A075B6N3 115 aa9.8□□□□□ -0.84
VPS39-201ENST00000318006 AMBPP02760 352 aa9.8□□□□□ -0.84
VPS39-201ENST00000318006 PYY3Q5JQD4 70 aa9.8□□□□□ -0.84
VPS39-201ENST00000318006 PSMG4Q5JS54 123 aa9.8□□□□□ -0.84
VPS39-201ENST00000318006 CDCP2Q5VXM1 449 aa9.8□□□□□ -0.84
VPS39-201ENST00000318006 FAM19A2Q8N3H0 131 aa9.8□□□□□ -0.84
VPS39-201ENST00000318006 TPRX1Q8N7U7 411 aa9.8□□□□□ -0.84
VPS39-201ENST00000318006 STPG3Q8N7X2 389 aa9.8□□□□□ -0.84
VPS39-201ENST00000318006 TM2D1Q9BX74 207 aa9.8□□□□□ -0.84
VPS39-201ENST00000318006 RTN4RQ9BZR6 473 aa9.8□□□□□ -0.84
VPS39-201ENST00000318006 PKIBQ9C010 78 aa9.8□□□□□ -0.84
VPS39-201ENST00000318006 MS4A5Q9H3V2 200 aa9.8□□□□□ -0.84
VPS39-201ENST00000318006 INSIG2Q9Y5U4 225 aa9.8□□□□□ -0.84
VPS39-201ENST00000318006 A6NNC1 897 aa9.79□□□□□ -0.84
VPS39-201ENST00000318006 K7N7A8 449 aa9.79□□□□□ -0.84
VPS39-201ENST00000318006 ZNF324O75467 553 aaPredicted RBP9.79□□□□□ -0.84
VPS39-201ENST00000318006 SNAI3Q3KNW1 292 aa9.79□□□□□ -0.84
VPS39-201ENST00000318006 FGF11Q92914 225 aa9.79□□□□□ -0.84
VPS39-201ENST00000318006 C5orf30Q96GV9 206 aa9.79□□□□□ -0.84
VPS39-201ENST00000318006 NEUROG3Q9Y4Z2 214 aa9.79□□□□□ -0.84
VPS39-201ENST00000318006 SOX21Q9Y651 276 aaPredicted RBP9.79□□□□□ -0.84
VPS39-201ENST00000318006 NYNRINQ9P2P1 1898 aaKnown RBP9.79□□□□□ -0.84
VPS39-201ENST00000318006 IGHV3-21A0A0B4J1V1 117 aa9.79□□□□□ -0.84
VPS39-201ENST00000318006 PRR33A8MZF0 331 aa9.79□□□□□ -0.84
VPS39-201ENST00000318006 LDLRAD4O15165 306 aa9.79□□□□□ -0.84
VPS39-201ENST00000318006 TFPI2P48307 235 aa9.79□□□□□ -0.84
VPS39-201ENST00000318006 GFI1BQ5VTD9 330 aa9.79□□□□□ -0.84
VPS39-201ENST00000318006 AMMECR1LQ6DCA0 310 aa9.79□□□□□ -0.84
VPS39-201ENST00000318006 PPP1R32Q7Z5V6 425 aa9.79□□□□□ -0.84
VPS39-201ENST00000318006 OR4D5Q8NGN0 318 aa9.79□□□□□ -0.84
VPS39-201ENST00000318006 TMEM242Q9NWH2 141 aa9.79□□□□□ -0.84
VPS39-201ENST00000318006 TCF19Q9Y242 345 aa9.79□□□□□ -0.84
VPS39-201ENST00000318006 CHD5Q8TDI0 1954 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms