RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 TMEM178BH3BS89 294 aa19.67■□□□□ 0.74
TRIM54-201ENST00000296098 RRHO14718 337 aa19.67■□□□□ 0.74
TRIM54-201ENST00000296098 HMGB3O15347 200 aaKnown RBP19.67■□□□□ 0.74
TRIM54-201ENST00000296098 ZCCHC14Q8WYQ9 949 aaKnown RBP19.67■□□□□ 0.74
TRIM54-201ENST00000296098 GGACTQ9BVM4 153 aa19.67■□□□□ 0.74
TRIM54-201ENST00000296098 PPIAL4EA0A075B759 164 aa19.66■□□□□ 0.74
TRIM54-201ENST00000296098 SMCO3A2RU48 225 aa19.66■□□□□ 0.74
TRIM54-201ENST00000296098 PPIAL4DF5H284 164 aa19.66■□□□□ 0.74
TRIM54-201ENST00000296098 PPIAL4FP0DN26 164 aa19.66■□□□□ 0.74
TRIM54-201ENST00000296098 AGAP20933 346 aa19.66■□□□□ 0.74
TRIM54-201ENST00000296098 PLA2G5P39877 138 aa19.66■□□□□ 0.74
TRIM54-201ENST00000296098 ACOT6Q3I5F7 207 aaPredicted RBP19.66■□□□□ 0.74
TRIM54-201ENST00000296098 OR10A7Q8NGE5 316 aa19.66■□□□□ 0.74
TRIM54-201ENST00000296098 TMEM14BQ9NUH8 114 aa19.66■□□□□ 0.74
TRIM54-201ENST00000296098 PPIAL4AQ9Y536 164 aa19.66■□□□□ 0.74
TRIM54-201ENST00000296098 ZNF727A8MUV8 499 aa19.66■□□□□ 0.74
TRIM54-201ENST00000296098 PRSS46E5RG02 174 aa19.66■□□□□ 0.74
TRIM54-201ENST00000296098 HRASP01112 189 aa19.66■□□□□ 0.74
TRIM54-201ENST00000296098 RPL31P62899 125 aaKnown RBP19.66■□□□□ 0.74
TRIM54-201ENST00000296098 MEF2BQ02080 365 aaPredicted RBP19.66■□□□□ 0.74
TRIM54-201ENST00000296098 PNRC1Q12796 327 aaPredicted RBP19.66■□□□□ 0.74
TRIM54-201ENST00000296098 POU2AF1Q16633 256 aa19.66■□□□□ 0.74
TRIM54-201ENST00000296098 Q8N7P7 452 aa19.66■□□□□ 0.74
TRIM54-201ENST00000296098 RAB24Q969Q5 203 aa19.66■□□□□ 0.74
TRIM54-201ENST00000296098 MALSU1Q96EH3 234 aa19.66■□□□□ 0.74
TRIM54-201ENST00000296098 VKORC1Q9BQB6 163 aa19.66■□□□□ 0.74
TRIM54-201ENST00000296098 SIRT7Q9NRC8 400 aa19.66■□□□□ 0.74
TRIM54-201ENST00000296098 ATMQ13315 3056 aa19.65■□□□□ 0.74
TRIM54-201ENST00000296098 B4DEV8 164 aa19.65■□□□□ 0.74
TRIM54-201ENST00000296098 MPDU1O75352 247 aa19.65■□□□□ 0.74
TRIM54-201ENST00000296098 TMPRSS5Q9H3S3 457 aa19.65■□□□□ 0.74
TRIM54-201ENST00000296098 SHISA9B4DS77 424 aa19.64■□□□□ 0.74
TRIM54-201ENST00000296098 CYB5BO43169 146 aa19.64■□□□□ 0.74
TRIM54-201ENST00000296098 PSMB3P49720 205 aa19.64■□□□□ 0.74
TRIM54-201ENST00000296098 RTL8BQ17RB0 113 aa19.64■□□□□ 0.74
TRIM54-201ENST00000296098 DYNLRB1Q9NP97 96 aa19.64■□□□□ 0.74
TRIM54-201ENST00000296098 MANBALQ9NQG1 85 aa19.64■□□□□ 0.74
TRIM54-201ENST00000296098 PTPRZ1P23471 2315 aaPredicted RBP19.64■□□□□ 0.74
TRIM54-201ENST00000296098 SPTBN2O15020 2390 aa19.64■□□□□ 0.73
TRIM54-201ENST00000296098 SOX15O60248 233 aa19.64■□□□□ 0.73
TRIM54-201ENST00000296098 AKR1D1P51857 326 aa19.64■□□□□ 0.73
TRIM54-201ENST00000296098 TMPRSS3P57727 454 aa19.64■□□□□ 0.73
TRIM54-201ENST00000296098 CD81P60033 236 aa19.64■□□□□ 0.73
TRIM54-201ENST00000296098 HSPE1P61604 102 aaKnown RBP19.64■□□□□ 0.73
TRIM54-201ENST00000296098 ABHD12Q8N2K0 398 aa19.64■□□□□ 0.73
TRIM54-201ENST00000296098 TMEM170AQ8WVE7 144 aa19.64■□□□□ 0.73
TRIM54-201ENST00000296098 CCL17Q92583 94 aa19.64■□□□□ 0.73
TRIM54-201ENST00000296098 RNASE6Q93091 150 aaKnown RBP19.64■□□□□ 0.73
TRIM54-201ENST00000296098 ZNF714Q96N38 554 aa19.64■□□□□ 0.73
TRIM54-201ENST00000296098 COL25A1Q9BXS0 654 aaPredicted RBP19.64■□□□□ 0.73
TRIM54-201ENST00000296098 TMEM106BQ9NUM4 274 aa19.64■□□□□ 0.73
TRIM54-201ENST00000296098 NBEAQ8NFP9 2946 aa19.64■□□□□ 0.73
TRIM54-201ENST00000296098 MAP1BP46821 2468 aaKnown RBP19.63■□□□□ 0.73
TRIM54-201ENST00000296098 CT45A6P0DMU7 189 aa19.63■□□□□ 0.73
TRIM54-201ENST00000296098 CT45A5P0DMU8 189 aa19.63■□□□□ 0.73
TRIM54-201ENST00000296098 CT45A7P0DMV0 189 aa19.63■□□□□ 0.73
TRIM54-201ENST00000296098 CDC34P49427 236 aaPredicted RBP19.63■□□□□ 0.73
TRIM54-201ENST00000296098 NCMAPQ5T1S8 102 aa19.63■□□□□ 0.73
TRIM54-201ENST00000296098 HEPN1Q6WQI6 88 aa19.63■□□□□ 0.73
TRIM54-201ENST00000296098 DMRTC2Q8IXT2 367 aaPredicted RBP19.63■□□□□ 0.73
TRIM54-201ENST00000296098 ENY2Q9NPA8 101 aa19.63■□□□□ 0.73
TRIM54-201ENST00000296098 SLC35D1Q9NTN3 355 aa19.63■□□□□ 0.73
TRIM54-201ENST00000296098 ZNRD1Q9P1U0 126 aa19.63■□□□□ 0.73
TRIM54-201ENST00000296098 MSRB2Q9Y3D2 182 aa19.63■□□□□ 0.73
TRIM54-201ENST00000296098 CXorf65A6NEN9 183 aa19.63■□□□□ 0.73
TRIM54-201ENST00000296098 IFNA4P05014 189 aa19.63■□□□□ 0.73
TRIM54-201ENST00000296098 TREML4Q6UXN2 200 aa19.63■□□□□ 0.73
TRIM54-201ENST00000296098 OR13D1Q8NGV5 346 aa19.63■□□□□ 0.73
TRIM54-201ENST00000296098 YLPM1P49750 1951 aaKnown RBP19.62■□□□□ 0.73
TRIM54-201ENST00000296098 E7EQL1 145 aa19.62■□□□□ 0.73
TRIM54-201ENST00000296098 LINC00518Q8N0U6 118 aa19.62■□□□□ 0.73
TRIM54-201ENST00000296098 SLC24A4Q8NFF2 622 aa19.62■□□□□ 0.73
TRIM54-201ENST00000296098 MS4A5Q9H3V2 200 aa19.62■□□□□ 0.73
TRIM54-201ENST00000296098 PRNDQ9UKY0 176 aa19.62■□□□□ 0.73
TRIM54-201ENST00000296098 SEC14L6B5MCN3 397 aa19.61■□□□□ 0.73
TRIM54-201ENST00000296098 FCN3O75636 299 aa19.61■□□□□ 0.73
TRIM54-201ENST00000296098 CCL3L1P16619 93 aa19.61■□□□□ 0.73
TRIM54-201ENST00000296098 RPL35P42766 123 aaKnown RBP19.61■□□□□ 0.73
TRIM54-201ENST00000296098 ZNF833PQ6ZTB9 187 aa19.61■□□□□ 0.73
TRIM54-201ENST00000296098 IQCF2Q8IXL9 164 aa19.61■□□□□ 0.73
TRIM54-201ENST00000296098 SDF2L1Q9HCN8 221 aa19.61■□□□□ 0.73
TRIM54-201ENST00000296098 OR51B2Q9Y5P1 312 aa19.61■□□□□ 0.73
TRIM54-201ENST00000296098 DEFA4P12838 97 aa19.61■□□□□ 0.73
TRIM54-201ENST00000296098 NPY1RP25929 384 aa19.61■□□□□ 0.73
TRIM54-201ENST00000296098 OPRK1P41145 380 aa19.61■□□□□ 0.73
TRIM54-201ENST00000296098 ERVFRD-1P60508 538 aa19.61■□□□□ 0.73
TRIM54-201ENST00000296098 WDR25Q64LD2 544 aaPredicted RBP19.61■□□□□ 0.73
TRIM54-201ENST00000296098 H1FXQ92522 213 aaKnown RBP19.61■□□□□ 0.73
TRIM54-201ENST00000296098 NEUROG1Q92886 237 aa19.61■□□□□ 0.73
TRIM54-201ENST00000296098 PIEZO2Q9H5I5 2752 aa19.6■□□□□ 0.73
TRIM54-201ENST00000296098 NDUFB3O43676 98 aa19.6■□□□□ 0.73
TRIM54-201ENST00000296098 LRRC10Q5BKY1 277 aa19.6■□□□□ 0.73
TRIM54-201ENST00000296098 TMEM200BQ69YZ2 307 aa19.6■□□□□ 0.73
TRIM54-201ENST00000296098 TMEM250H0YL14 139 aa19.59■□□□□ 0.73
TRIM54-201ENST00000296098 IGKV1-16P04430 117 aa19.59■□□□□ 0.73
TRIM54-201ENST00000296098 S100A6P06703 90 aa19.59■□□□□ 0.73
TRIM54-201ENST00000296098 ELOBQ15370 118 aa19.59■□□□□ 0.73
TRIM54-201ENST00000296098 MGST2Q99735 147 aa19.59■□□□□ 0.73
TRIM54-201ENST00000296098 DMXL2Q8TDJ6 3036 aa19.59■□□□□ 0.73
TRIM54-201ENST00000296098 NDUFS6O75380 124 aaKnown RBP19.59■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms