RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 TGIF2LYQ8IUE0 185 aa13.83□□□□□ -0.2
CPSF4-201ENST00000292476 FAM24BQ8N5W8 94 aa13.83□□□□□ -0.2
CPSF4-201ENST00000292476 FAM216BQ8N7L0 139 aa13.83□□□□□ -0.2
CPSF4-201ENST00000292476 TIMD4Q96H15 378 aa13.83□□□□□ -0.2
CPSF4-201ENST00000292476 RCC1LQ96I51 464 aaKnown RBP13.83□□□□□ -0.2
CPSF4-201ENST00000292476 RSG1Q9BU20 258 aa13.83□□□□□ -0.2
CPSF4-201ENST00000292476 DCAF16Q9NXF7 216 aa13.83□□□□□ -0.2
CPSF4-201ENST00000292476 ABCA12Q86UK0 2595 aa13.82□□□□□ -0.2
CPSF4-201ENST00000292476 ZNF729A6NN14 1252 aaPredicted RBP13.82□□□□□ -0.2
CPSF4-201ENST00000292476 FAM90A9PA6NNJ1 464 aa13.82□□□□□ -0.2
CPSF4-201ENST00000292476 F2RL2O00254 374 aa13.82□□□□□ -0.2
CPSF4-201ENST00000292476 TNFRSF13BO14836 293 aaPredicted RBP13.82□□□□□ -0.2
CPSF4-201ENST00000292476 NDUFB7P17568 137 aa13.82□□□□□ -0.2
CPSF4-201ENST00000292476 C5orf30Q96GV9 206 aa13.82□□□□□ -0.2
CPSF4-201ENST00000292476 OR4C12Q96R67 309 aa13.82□□□□□ -0.2
CPSF4-201ENST00000292476 TMEM147Q9BVK8 224 aa13.82□□□□□ -0.2
CPSF4-201ENST00000292476 LINC00312Q9Y6C7 94 aa13.82□□□□□ -0.2
CPSF4-201ENST00000292476 NOTCH2Q04721 2471 aa13.82□□□□□ -0.2
CPSF4-201ENST00000292476 YPEL1O60688 119 aa13.82□□□□□ -0.2
CPSF4-201ENST00000292476 IGHV2-5P01817 119 aa13.82□□□□□ -0.2
CPSF4-201ENST00000292476 MBP02144 154 aa13.82□□□□□ -0.2
CPSF4-201ENST00000292476 ARG1P05089 322 aa13.82□□□□□ -0.2
CPSF4-201ENST00000292476 SOD3P08294 240 aa13.82□□□□□ -0.2
CPSF4-201ENST00000292476 SSTR5P35346 364 aa13.82□□□□□ -0.2
CPSF4-201ENST00000292476 SNRPEP62304 92 aaKnown RBP13.82□□□□□ -0.2
CPSF4-201ENST00000292476 DLK1P80370 383 aa13.82□□□□□ -0.2
CPSF4-201ENST00000292476 OR10A7Q8NGE5 316 aa13.82□□□□□ -0.2
CPSF4-201ENST00000292476 OR52L2PQ8NGH6 319 aa13.82□□□□□ -0.2
CPSF4-201ENST00000292476 UBALD1Q8TB05 177 aa13.82□□□□□ -0.2
CPSF4-201ENST00000292476 TCTEX1D2Q8WW35 142 aa13.82□□□□□ -0.2
CPSF4-201ENST00000292476 RAB1CQ92928 201 aa13.82□□□□□ -0.2
CPSF4-201ENST00000292476 YPEL2Q96QA6 119 aa13.82□□□□□ -0.2
CPSF4-201ENST00000292476 GAL3ST2Q9H3Q3 398 aa13.82□□□□□ -0.2
CPSF4-201ENST00000292476 TMEM242Q9NWH2 141 aa13.82□□□□□ -0.2
CPSF4-201ENST00000292476 CALYQ9NYX4 217 aa13.82□□□□□ -0.2
CPSF4-201ENST00000292476 TANC2Q9HCD6 1990 aa13.81□□□□□ -0.2
CPSF4-201ENST00000292476 KBTBD11-OT1A0A1B0GTJ5 212 aa13.81□□□□□ -0.2
CPSF4-201ENST00000292476 hCG_1809904A0A1W2PP81 198 aa13.81□□□□□ -0.2
CPSF4-201ENST00000292476 A0A1W2PR64 198 aa13.81□□□□□ -0.2
CPSF4-201ENST00000292476 A0A1W2PRV1 198 aa13.81□□□□□ -0.2
CPSF4-201ENST00000292476 CGB3P0DN86 165 aa13.81□□□□□ -0.2
CPSF4-201ENST00000292476 CGB7P0DN87 165 aa13.81□□□□□ -0.2
CPSF4-201ENST00000292476 KRTAP10-9P60411 292 aa13.81□□□□□ -0.2
CPSF4-201ENST00000292476 RPL30P62888 115 aaKnown RBP13.81□□□□□ -0.2
CPSF4-201ENST00000292476 ZNF726P1Q15940 193 aa13.81□□□□□ -0.2
CPSF4-201ENST00000292476 AARDQ4LEZ3 155 aa13.81□□□□□ -0.2
CPSF4-201ENST00000292476 LINC00574Q9H8X3 128 aa13.81□□□□□ -0.2
CPSF4-201ENST00000292476 UBTD1Q9HAC8 227 aa13.81□□□□□ -0.2
CPSF4-201ENST00000292476 GNG13Q9P2W3 67 aa13.81□□□□□ -0.2
CPSF4-201ENST00000292476 GNG12Q9UBI6 72 aa13.81□□□□□ -0.2
CPSF4-201ENST00000292476 CLN8Q9UBY8 286 aa13.81□□□□□ -0.2
CPSF4-201ENST00000292476 VAX2Q9UIW0 290 aa13.81□□□□□ -0.2
CPSF4-201ENST00000292476 ARFGEF3Q5TH69 2177 aa13.81□□□□□ -0.2
CPSF4-201ENST00000292476 NAV2Q8IVL1 2488 aa13.8□□□□□ -0.2
CPSF4-201ENST00000292476 ITGB1BP1O14713 200 aa13.8□□□□□ -0.2
CPSF4-201ENST00000292476 RAMP3O60896 148 aa13.8□□□□□ -0.2
CPSF4-201ENST00000292476 COL8A2P25067 703 aa13.8□□□□□ -0.2
CPSF4-201ENST00000292476 VWC2Q2TAL6 325 aa13.8□□□□□ -0.2
CPSF4-201ENST00000292476 FAM90A2PQ658T7 463 aa13.8□□□□□ -0.2
CPSF4-201ENST00000292476 RBMS3Q6XE24 437 aaKnown RBP13.8□□□□□ -0.2
CPSF4-201ENST00000292476 APCP25054 2843 aa13.8□□□□□ -0.2
CPSF4-201ENST00000292476 ROS1P08922 2347 aa13.8□□□□□ -0.2
CPSF4-201ENST00000292476 MAP1LC3B2A6NCE7 125 aa13.79□□□□□ -0.2
CPSF4-201ENST00000292476 SOX15O60248 233 aa13.79□□□□□ -0.2
CPSF4-201ENST00000292476 EIF3GO75821 320 aaKnown RBP eCLIP13.79□□□□□ -0.2
CPSF4-201ENST00000292476 S1PR2O95136 353 aa13.79□□□□□ -0.2
CPSF4-201ENST00000292476 SELLP14151 372 aa13.79□□□□□ -0.2
CPSF4-201ENST00000292476 G6PCP35575 357 aa13.79□□□□□ -0.2
CPSF4-201ENST00000292476 RAB7AP51149 207 aa13.79□□□□□ -0.2
CPSF4-201ENST00000292476 RPL31P62899 125 aaKnown RBP13.79□□□□□ -0.2
CPSF4-201ENST00000292476 H2BFWTQ7Z2G1 175 aa13.79□□□□□ -0.2
CPSF4-201ENST00000292476 RFESDQ8TAC1 157 aa13.79□□□□□ -0.2
CPSF4-201ENST00000292476 MAP1LC3BQ9GZQ8 125 aa13.79□□□□□ -0.2
CPSF4-201ENST00000292476 CHODLQ9H9P2 273 aa13.79□□□□□ -0.2
CPSF4-201ENST00000292476 UBE2L5PA0A1B0GUS4 154 aa13.79□□□□□ -0.2
CPSF4-201ENST00000292476 PMS2P5A8MQ11 134 aa13.79□□□□□ -0.2
CPSF4-201ENST00000292476 C17orf98A8MV24 154 aa13.79□□□□□ -0.2
CPSF4-201ENST00000292476 AP4M1O00189 453 aa13.79□□□□□ -0.2
CPSF4-201ENST00000292476 TGOLN2O43493 480 aa13.79□□□□□ -0.2
CPSF4-201ENST00000292476 KRASP01116 189 aa13.79□□□□□ -0.2
CPSF4-201ENST00000292476 IGHV2-70P01814 119 aa13.79□□□□□ -0.2
CPSF4-201ENST00000292476 BRWD1-AS2P59051 145 aa13.79□□□□□ -0.2
CPSF4-201ENST00000292476 TMEM155Q4W5P6 130 aa13.79□□□□□ -0.2
CPSF4-201ENST00000292476 MORN2Q502X0 79 aa13.79□□□□□ -0.2
CPSF4-201ENST00000292476 DTD1Q8TEA8 209 aa13.79□□□□□ -0.2
CPSF4-201ENST00000292476 AGMATQ9BSE5 352 aa13.79□□□□□ -0.2
CPSF4-201ENST00000292476 DCTN5Q9BTE1 182 aa13.79□□□□□ -0.2
CPSF4-201ENST00000292476 MIOXQ9UGB7 285 aa13.79□□□□□ -0.2
CPSF4-201ENST00000292476 TRBV23-1A0A0A0MS06 115 aa13.78□□□□□ -0.2
CPSF4-201ENST00000292476 RBFOX2O43251 390 aaKnown RBP eCLIP13.78□□□□□ -0.2
CPSF4-201ENST00000292476 GNB2P62879 340 aa13.78□□□□□ -0.2
CPSF4-201ENST00000292476 ZNF816Q0VGE8 651 aaPredicted RBP13.78□□□□□ -0.2
CPSF4-201ENST00000292476 DUX4L9Q6RFH8 374 aaPredicted RBP13.78□□□□□ -0.2
CPSF4-201ENST00000292476 OR10P1Q8NGE3 313 aa13.78□□□□□ -0.2
CPSF4-201ENST00000292476 OR13D1Q8NGV5 346 aa13.78□□□□□ -0.2
CPSF4-201ENST00000292476 VSIRQ9H7M9 311 aa13.78□□□□□ -0.2
CPSF4-201ENST00000292476 IDI2-AS1Q9NZ38 188 aa13.78□□□□□ -0.2
CPSF4-201ENST00000292476 CTXND1A0A1B0GTU2 59 aa13.77□□□□□ -0.21
CPSF4-201ENST00000292476 DVL1O14640 695 aa13.77□□□□□ -0.21
CPSF4-201ENST00000292476 S100A9P06702 114 aaKnown RBP13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms