RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 TRGC2P03986 189 aa16.3■□□□□ 0.2
UPF1-201ENST00000262803 RPL24P83731 157 aaKnown RBP16.3■□□□□ 0.2
UPF1-201ENST00000262803 RSPO4Q2I0M5 234 aaPredicted RBP16.3■□□□□ 0.2
UPF1-201ENST00000262803 PMCHL2Q9BQD1 86 aa16.3■□□□□ 0.2
UPF1-201ENST00000262803 SSBP3Q9BWW4 388 aaPredicted RBP16.3■□□□□ 0.2
UPF1-201ENST00000262803 TMEM74BQ9NUR3 256 aa16.3■□□□□ 0.2
UPF1-201ENST00000262803 LNP1A1A4G5 178 aa16.3■□□□□ 0.2
UPF1-201ENST00000262803 NUDT3O95989 172 aa16.3■□□□□ 0.2
UPF1-201ENST00000262803 VN1R17PQ8TDU5 208 aa16.3■□□□□ 0.2
UPF1-201ENST00000262803 HIST1H2BAQ96A08 127 aa16.3■□□□□ 0.2
UPF1-201ENST00000262803 FOXJ2Q9P0K8 574 aa16.3■□□□□ 0.2
UPF1-201ENST00000262803 ZNF318Q5VUA4 2279 aa16.3■□□□□ 0.2
UPF1-201ENST00000262803 H0YL77 283 aa16.29■□□□□ 0.2
UPF1-201ENST00000262803 FAM159AQ6UWV7 190 aa16.29■□□□□ 0.2
UPF1-201ENST00000262803 SNRPCP09234 159 aaKnown RBP16.29■□□□□ 0.2
UPF1-201ENST00000262803 IL17BQ9UHF5 180 aa16.29■□□□□ 0.2
UPF1-201ENST00000262803 A0A0G2JK05 382 aa16.29■□□□□ 0.2
UPF1-201ENST00000262803 GDF9O60383 454 aa16.29■□□□□ 0.2
UPF1-201ENST00000262803 ABLIM2Q6H8Q1 611 aa16.29■□□□□ 0.2
UPF1-201ENST00000262803 PEMTQ9UBM1 199 aa16.29■□□□□ 0.2
UPF1-201ENST00000262803 CA2P00918 260 aa16.29■□□□□ 0.2
UPF1-201ENST00000262803 RPLP1P05386 114 aaKnown RBP16.29■□□□□ 0.2
UPF1-201ENST00000262803 JOSD1Q15040 202 aaPredicted RBP16.29■□□□□ 0.2
UPF1-201ENST00000262803 RTTNQ86VV8 2226 aa16.28■□□□□ 0.2
UPF1-201ENST00000262803 OR4C46A6NHA9 309 aa16.28■□□□□ 0.2
UPF1-201ENST00000262803 DLX6P56179 175 aa16.28■□□□□ 0.2
UPF1-201ENST00000262803 NPFFO15130 113 aa16.28■□□□□ 0.2
UPF1-201ENST00000262803 NPBWR2P48146 333 aa16.28■□□□□ 0.2
UPF1-201ENST00000262803 ARID2Q68CP9 1835 aa16.28■□□□□ 0.2
UPF1-201ENST00000262803 CLDND2Q8NHS1 167 aa16.28■□□□□ 0.2
UPF1-201ENST00000262803 NPIPB9F8W1W9 429 aa16.28■□□□□ 0.2
UPF1-201ENST00000262803 TIAF1O95411 115 aa16.28■□□□□ 0.2
UPF1-201ENST00000262803 PRSS8Q16651 343 aa16.28■□□□□ 0.2
UPF1-201ENST00000262803 TMEM177Q53S58 311 aa16.28■□□□□ 0.2
UPF1-201ENST00000262803 MIC13Q5XKP0 118 aa16.28■□□□□ 0.2
UPF1-201ENST00000262803 OR4A47Q6IF82 309 aa16.28■□□□□ 0.2
UPF1-201ENST00000262803 POC1AQ8NBT0 407 aa16.28■□□□□ 0.2
UPF1-201ENST00000262803 APCDD1LQ8NCL9 501 aa16.28■□□□□ 0.2
UPF1-201ENST00000262803 TMEM101Q96IK0 257 aa16.28■□□□□ 0.2
UPF1-201ENST00000262803 AICDAQ9GZX7 198 aa16.28■□□□□ 0.2
UPF1-201ENST00000262803 TGIF1Q15583 401 aa16.27■□□□□ 0.2
UPF1-201ENST00000262803 RAXQ9Y2V3 346 aa16.27■□□□□ 0.2
UPF1-201ENST00000262803 ZDBF2Q9HCK1 2354 aa16.27■□□□□ 0.2
UPF1-201ENST00000262803 C12orf54Q6X4T0 127 aa16.27■□□□□ 0.2
UPF1-201ENST00000262803 FDCSPQ8NFU4 85 aa16.27■□□□□ 0.2
UPF1-201ENST00000262803 FAM168AQ92567 244 aa16.27■□□□□ 0.2
UPF1-201ENST00000262803 ZNF708P17019 499 aa16.27■□□□□ 0.2
UPF1-201ENST00000262803 TMEM187Q14656 261 aa16.27■□□□□ 0.2
UPF1-201ENST00000262803 A0A1B0GW15 77 aa16.27■□□□□ 0.19
UPF1-201ENST00000262803 CD8AP01732 235 aa16.27■□□□□ 0.19
UPF1-201ENST00000262803 RND3P61587 244 aa16.27■□□□□ 0.19
UPF1-201ENST00000262803 C2orf83Q53S99 150 aa16.27■□□□□ 0.19
UPF1-201ENST00000262803 ACP7Q6ZNF0 438 aa16.27■□□□□ 0.19
UPF1-201ENST00000262803 RNASE6Q93091 150 aaKnown RBP16.27■□□□□ 0.19
UPF1-201ENST00000262803 TRIOBPQ9H2D6 2365 aa16.27■□□□□ 0.19
UPF1-201ENST00000262803 TRGV3P03979 118 aa16.26■□□□□ 0.19
UPF1-201ENST00000262803 LY6EQ16553 131 aa16.26■□□□□ 0.19
UPF1-201ENST00000262803 ZP1P60852 638 aa16.26■□□□□ 0.19
UPF1-201ENST00000262803 ZNF818PQ6ZRF7 136 aa16.26■□□□□ 0.19
UPF1-201ENST00000262803 OR10AG1Q8NH19 301 aa16.26■□□□□ 0.19
UPF1-201ENST00000262803 RARRES2Q99969 163 aa16.26■□□□□ 0.19
UPF1-201ENST00000262803 RNF224P0DH78 156 aa16.26■□□□□ 0.19
UPF1-201ENST00000262803 PAX1P15863 534 aa16.26■□□□□ 0.19
UPF1-201ENST00000262803 CEP250Q9BV73 2442 aa16.26■□□□□ 0.19
UPF1-201ENST00000262803 DANCRP0C864 163 aa16.26■□□□□ 0.19
UPF1-201ENST00000262803 SSTR5P35346 364 aa16.26■□□□□ 0.19
UPF1-201ENST00000262803 TUBA4BQ9H853 241 aa16.26■□□□□ 0.19
UPF1-201ENST00000262803 LOC389332A0A1B0GUA5 103 aa16.25■□□□□ 0.19
UPF1-201ENST00000262803 NMUP48645 174 aa16.25■□□□□ 0.19
UPF1-201ENST00000262803 MARVELD3Q96A59 401 aa16.25■□□□□ 0.19
UPF1-201ENST00000262803 CHCHD2Q9Y6H1 151 aaPredicted RBP16.25■□□□□ 0.19
UPF1-201ENST00000262803 RAMP1O60894 148 aa16.25■□□□□ 0.19
UPF1-201ENST00000262803 DSCR9P59020 149 aa16.25■□□□□ 0.19
UPF1-201ENST00000262803 ZNF385CQ66K41 422 aaPredicted RBP16.25■□□□□ 0.19
UPF1-201ENST00000262803 GEMIN7Q9H840 131 aaKnown RBP16.25■□□□□ 0.19
UPF1-201ENST00000262803 H3BVH4 76 aa16.25■□□□□ 0.19
UPF1-201ENST00000262803 SOX21Q9Y651 276 aaPredicted RBP16.25■□□□□ 0.19
UPF1-201ENST00000262803 IGHV3OR16-12A0A075B7B8 117 aa16.25■□□□□ 0.19
UPF1-201ENST00000262803 TGFBR3LH3BV60 316 aa16.25■□□□□ 0.19
UPF1-201ENST00000262803 GHRHP01286 108 aa16.25■□□□□ 0.19
UPF1-201ENST00000262803 TM2D1Q9BX74 207 aa16.25■□□□□ 0.19
UPF1-201ENST00000262803 CYP2G1PQ6ZSU1 146 aa16.24■□□□□ 0.19
UPF1-201ENST00000262803 NABP2Q9BQ15 211 aa16.24■□□□□ 0.19
UPF1-201ENST00000262803 IGKV3D-11A0A0A0MRZ8 115 aa16.24■□□□□ 0.19
UPF1-201ENST00000262803 GLIPR1P48060 266 aa16.24■□□□□ 0.19
UPF1-201ENST00000262803 FHITP49789 147 aa16.24■□□□□ 0.19
UPF1-201ENST00000262803 ZG16O60844 167 aa16.24■□□□□ 0.19
UPF1-201ENST00000262803 LEPROTL1O95214 131 aa16.24■□□□□ 0.19
UPF1-201ENST00000262803 MYOD1P15172 320 aa16.24■□□□□ 0.19
UPF1-201ENST00000262803 HAX1O00165 279 aa16.24■□□□□ 0.19
UPF1-201ENST00000262803 EIF3GO75821 320 aaKnown RBP eCLIP16.24■□□□□ 0.19
UPF1-201ENST00000262803 ASPHD2Q6ICH7 369 aa16.24■□□□□ 0.19
UPF1-201ENST00000262803 TBX6O95947 436 aaPredicted RBP16.23■□□□□ 0.19
UPF1-201ENST00000262803 ZNF56Q15929 161 aa16.23■□□□□ 0.19
UPF1-201ENST00000262803 LINC00312Q9Y6C7 94 aa16.23■□□□□ 0.19
UPF1-201ENST00000262803 VENTXO95231 258 aa16.23■□□□□ 0.19
UPF1-201ENST00000262803 Q6AWC8 147 aa16.23■□□□□ 0.19
UPF1-201ENST00000262803 C1QL2Q7Z5L3 287 aa16.23■□□□□ 0.19
UPF1-201ENST00000262803 DRAM1Q8N682 238 aa16.23■□□□□ 0.19
UPF1-201ENST00000262803 ZIC4Q8N9L1 334 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms