RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 A0A1W2PRM7 423 aa11.39□□□□□ -0.59
LDLR-201ENST00000252444 C15orf61A6NNL5 157 aa11.39□□□□□ -0.59
LDLR-201ENST00000252444 CTRB1P17538 263 aa11.39□□□□□ -0.59
LDLR-201ENST00000252444 DAZAP2Q15038 168 aaPredicted RBP11.39□□□□□ -0.59
LDLR-201ENST00000252444 CTRB2Q6GPI1 263 aa11.39□□□□□ -0.59
LDLR-201ENST00000252444 Q6P435 159 aa11.39□□□□□ -0.59
LDLR-201ENST00000252444 IFI27L2Q9H2X8 130 aa11.39□□□□□ -0.59
LDLR-201ENST00000252444 NUP210LQ5VU65 1888 aa11.39□□□□□ -0.59
LDLR-201ENST00000252444 ATP6V0CP27449 155 aa11.39□□□□□ -0.59
LDLR-201ENST00000252444 EBLN2Q6P2I7 272 aa11.39□□□□□ -0.59
LDLR-201ENST00000252444 PPP1R27Q86WC6 154 aa11.39□□□□□ -0.59
LDLR-201ENST00000252444 S100A4P26447 101 aaKnown RBP11.39□□□□□ -0.59
LDLR-201ENST00000252444 AARDQ4LEZ3 155 aa11.39□□□□□ -0.59
LDLR-201ENST00000252444 LHFPL1Q86WI0 220 aa11.39□□□□□ -0.59
LDLR-201ENST00000252444 ANAPC10Q9UM13 185 aa11.39□□□□□ -0.59
LDLR-201ENST00000252444 FNDC10F2Z333 226 aa11.39□□□□□ -0.59
LDLR-201ENST00000252444 PAX5Q02548 391 aa11.39□□□□□ -0.59
LDLR-201ENST00000252444 RTBDNQ9BSG5 229 aaPredicted RBP11.39□□□□□ -0.59
LDLR-201ENST00000252444 A0A1W2PPE3 182 aa11.38□□□□□ -0.59
LDLR-201ENST00000252444 C11orf94C9JXX5 98 aa11.38□□□□□ -0.59
LDLR-201ENST00000252444 PF4V1P10720 104 aa11.38□□□□□ -0.59
LDLR-201ENST00000252444 ERVFC1-1P60608 527 aa11.38□□□□□ -0.59
LDLR-201ENST00000252444 LCN2P80188 198 aa11.38□□□□□ -0.59
LDLR-201ENST00000252444 PRORYQ9H606 182 aa11.38□□□□□ -0.59
LDLR-201ENST00000252444 HSPB1P04792 205 aaKnown RBP11.38□□□□□ -0.59
LDLR-201ENST00000252444 IGHV1-8P0DP01 117 aa11.38□□□□□ -0.59
LDLR-201ENST00000252444 CXCL3P19876 107 aa11.38□□□□□ -0.59
LDLR-201ENST00000252444 GCSHP23434 173 aa11.38□□□□□ -0.59
LDLR-201ENST00000252444 RIGQ13278 110 aa11.38□□□□□ -0.59
LDLR-201ENST00000252444 PSG5Q15238 335 aa11.38□□□□□ -0.59
LDLR-201ENST00000252444 CLEC12BQ2HXU8 276 aa11.38□□□□□ -0.59
LDLR-201ENST00000252444 ZNF660Q6AZW8 331 aaPredicted RBP11.38□□□□□ -0.59
LDLR-201ENST00000252444 C1orf122Q6ZSJ8 110 aa11.38□□□□□ -0.59
LDLR-201ENST00000252444 DMRTA2Q96SC8 542 aa11.38□□□□□ -0.59
LDLR-201ENST00000252444 DNAJC4Q9NNZ3 241 aa11.38□□□□□ -0.59
LDLR-201ENST00000252444 KAAG1Q9UBP8 84 aa11.38□□□□□ -0.59
LDLR-201ENST00000252444 MYOD1P15172 320 aa11.38□□□□□ -0.59
LDLR-201ENST00000252444 SLC25A48Q6ZT89 311 aaKnown RBP11.38□□□□□ -0.59
LDLR-201ENST00000252444 LINC00311Q8N616 119 aa11.38□□□□□ -0.59
LDLR-201ENST00000252444 SLC25A22Q9H936 323 aa11.38□□□□□ -0.59
LDLR-201ENST00000252444 CRIM1Q9NZV1 1036 aa11.38□□□□□ -0.59
LDLR-201ENST00000252444 SEC16AO15027 2179 aa11.38□□□□□ -0.59
LDLR-201ENST00000252444 ADAM10O14672 748 aa11.38□□□□□ -0.59
LDLR-201ENST00000252444 C8orf88P0DMB2 117 aa11.38□□□□□ -0.59
LDLR-201ENST00000252444 OR10J1P30954 320 aa11.38□□□□□ -0.59
LDLR-201ENST00000252444 HGFACQ04756 655 aa11.38□□□□□ -0.59
LDLR-201ENST00000252444 OR4P4Q8NGL7 312 aa11.38□□□□□ -0.59
LDLR-201ENST00000252444 PLXND1Q9Y4D7 1925 aa11.37□□□□□ -0.59
LDLR-201ENST00000252444 OR10J6PQ8NGY7 276 aa11.37□□□□□ -0.59
LDLR-201ENST00000252444 GFI1Q99684 422 aa11.37□□□□□ -0.59
LDLR-201ENST00000252444 ELF5Q9UKW6 265 aaPredicted RBP11.37□□□□□ -0.59
LDLR-201ENST00000252444 FOXA2Q9Y261 457 aaPredicted RBP11.37□□□□□ -0.59
LDLR-201ENST00000252444 PI4KAP42356 2102 aa11.37□□□□□ -0.59
LDLR-201ENST00000252444 SAA2-SAA4A0A096LPE2 208 aa11.37□□□□□ -0.59
LDLR-201ENST00000252444 E7EQL1 145 aa11.37□□□□□ -0.59
LDLR-201ENST00000252444 SAA2P0DJI9 122 aaPredicted RBP11.37□□□□□ -0.59
LDLR-201ENST00000252444 DLX6P56179 175 aa11.37□□□□□ -0.59
LDLR-201ENST00000252444 MRPL20Q9BYC9 149 aaKnown RBP11.37□□□□□ -0.59
LDLR-201ENST00000252444 DBX1A6NMT0 343 aa11.37□□□□□ -0.59
LDLR-201ENST00000252444 WNT2P09544 360 aa11.37□□□□□ -0.59
LDLR-201ENST00000252444 CDKN1AP38936 164 aa11.37□□□□□ -0.59
LDLR-201ENST00000252444 IFITM3Q01628 133 aa11.37□□□□□ -0.59
LDLR-201ENST00000252444 TPTE2P1Q5T6R2 138 aa11.37□□□□□ -0.59
LDLR-201ENST00000252444 SP5Q6BEB4 398 aaPredicted RBP11.37□□□□□ -0.59
LDLR-201ENST00000252444 UFC1Q9Y3C8 167 aa11.37□□□□□ -0.59
LDLR-201ENST00000252444 IGHV3-7P01780 117 aa11.37□□□□□ -0.59
LDLR-201ENST00000252444 BAGE3Q86Y29 109 aa11.37□□□□□ -0.59
LDLR-201ENST00000252444 BAGE2Q86Y30 109 aa11.37□□□□□ -0.59
LDLR-201ENST00000252444 RELL2Q8NC24 303 aaPredicted RBP11.37□□□□□ -0.59
LDLR-201ENST00000252444 SDHCQ99643 169 aaPredicted RBP11.37□□□□□ -0.59
LDLR-201ENST00000252444 BOLA1Q9Y3E2 137 aa11.37□□□□□ -0.59
LDLR-201ENST00000252444 CGAP01215 116 aa11.36□□□□□ -0.59
LDLR-201ENST00000252444 RAB4AP20338 218 aa11.36□□□□□ -0.59
LDLR-201ENST00000252444 PRCDQ00LT1 54 aa11.36□□□□□ -0.59
LDLR-201ENST00000252444 LINC00869P0C866 280 aa11.36□□□□□ -0.59
LDLR-201ENST00000252444 TP53RKQ96S44 253 aa11.36□□□□□ -0.59
LDLR-201ENST00000252444 AP4M1O00189 453 aa11.36□□□□□ -0.59
LDLR-201ENST00000252444 TGFAP01135 160 aa11.36□□□□□ -0.59
LDLR-201ENST00000252444 BCL2P10415 239 aa11.36□□□□□ -0.59
LDLR-201ENST00000252444 DUTP33316 252 aaKnown RBP11.36□□□□□ -0.59
LDLR-201ENST00000252444 RBPMS2Q6ZRY4 209 aaKnown RBP11.36□□□□□ -0.59
LDLR-201ENST00000252444 OR51G1Q8NGK1 321 aa11.36□□□□□ -0.59
LDLR-201ENST00000252444 CACNA1IQ9P0X4 2223 aa11.36□□□□□ -0.59
LDLR-201ENST00000252444 IGHV2-26A0A0B4J1V2 119 aa11.36□□□□□ -0.59
LDLR-201ENST00000252444 SIAH2O43255 324 aa11.36□□□□□ -0.59
LDLR-201ENST00000252444 IGKV1D-33P01593 117 aa11.36□□□□□ -0.59
LDLR-201ENST00000252444 IGKV1-33P01594 117 aa11.36□□□□□ -0.59
LDLR-201ENST00000252444 PRTN3P24158 256 aa11.36□□□□□ -0.59
LDLR-201ENST00000252444 C19orf35Q6ZS72 473 aa11.36□□□□□ -0.59
LDLR-201ENST00000252444 CYP2G1PQ6ZSU1 146 aa11.36□□□□□ -0.59
LDLR-201ENST00000252444 IGKV1-12A0A0C4DH73 117 aa11.35□□□□□ -0.59
LDLR-201ENST00000252444 IGKV1D-12P01611 117 aa11.35□□□□□ -0.59
LDLR-201ENST00000252444 NPPCP23582 126 aa11.35□□□□□ -0.59
LDLR-201ENST00000252444 ZNF705GA8MUZ8 300 aaPredicted RBP11.35□□□□□ -0.59
LDLR-201ENST00000252444 FOXG1P55316 489 aaPredicted RBP11.35□□□□□ -0.59
LDLR-201ENST00000252444 NHLRC2Q8NBF2 726 aa11.35□□□□□ -0.59
LDLR-201ENST00000252444 YAE1D1Q9NRH1 226 aa11.35□□□□□ -0.59
LDLR-201ENST00000252444 ZNF735P0CB33 412 aa11.35□□□□□ -0.59
LDLR-201ENST00000252444 CENPVQ7Z7K6 275 aaPredicted RBP11.35□□□□□ -0.59
LDLR-201ENST00000252444 SLC25A33Q9BSK2 321 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms