RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 PSG7Q13046 419 aa12.35□□□□□ -0.43
PTPRA-201ENST00000216877 DEFB125Q8N687 156 aa12.35□□□□□ -0.43
PTPRA-201ENST00000216877 TMEM70Q9BUB7 260 aa12.35□□□□□ -0.43
PTPRA-201ENST00000216877 MED12LQ86YW9 2145 aa12.35□□□□□ -0.43
PTPRA-201ENST00000216877 TRAV26-1A0A087WT03 109 aa12.35□□□□□ -0.43
PTPRA-201ENST00000216877 COL9A1P20849 921 aa12.35□□□□□ -0.43
PTPRA-201ENST00000216877 HTR1DP28221 377 aa12.35□□□□□ -0.43
PTPRA-201ENST00000216877 TM4SF20Q53R12 229 aa12.35□□□□□ -0.43
PTPRA-201ENST00000216877 FGFRL1Q8N441 504 aa12.35□□□□□ -0.43
PTPRA-201ENST00000216877 SIGMAR1Q99720 223 aa12.35□□□□□ -0.43
PTPRA-201ENST00000216877 PLEKHA3Q9HB20 300 aa12.35□□□□□ -0.43
PTPRA-201ENST00000216877 PNRC2Q9NPJ4 139 aaKnown RBP12.35□□□□□ -0.43
PTPRA-201ENST00000216877 IGKV1-5P01602 117 aa12.35□□□□□ -0.43
PTPRA-201ENST00000216877 BCL3P20749 454 aa12.35□□□□□ -0.43
PTPRA-201ENST00000216877 MIC13Q5XKP0 118 aa12.35□□□□□ -0.43
PTPRA-201ENST00000216877 OR4A5Q8NH83 315 aa12.35□□□□□ -0.43
PTPRA-201ENST00000216877 CSN3P07498 182 aa12.34□□□□□ -0.43
PTPRA-201ENST00000216877 CCL1P22362 96 aa12.34□□□□□ -0.43
PTPRA-201ENST00000216877 CKS1BP61024 79 aa12.34□□□□□ -0.43
PTPRA-201ENST00000216877 TRAT1Q6PIZ9 186 aa12.34□□□□□ -0.43
PTPRA-201ENST00000216877 ZNF488Q96MN9 340 aa12.34□□□□□ -0.43
PTPRA-201ENST00000216877 ISLRO14498 428 aa12.34□□□□□ -0.43
PTPRA-201ENST00000216877 OR10J4P0C629 311 aa12.34□□□□□ -0.43
PTPRA-201ENST00000216877 C17orf67Q0P5P2 114 aa12.34□□□□□ -0.43
PTPRA-201ENST00000216877 HES3Q5TGS1 186 aa12.34□□□□□ -0.43
PTPRA-201ENST00000216877 TMEM116Q8NCL8 245 aa12.34□□□□□ -0.43
PTPRA-201ENST00000216877 OR4S2Q8NH73 311 aa12.34□□□□□ -0.43
PTPRA-201ENST00000216877 SSC4DQ8WTU2 575 aa12.34□□□□□ -0.43
PTPRA-201ENST00000216877 GNB1LQ9BYB4 327 aa12.34□□□□□ -0.43
PTPRA-201ENST00000216877 K7EN84 100 aa12.34□□□□□ -0.43
PTPRA-201ENST00000216877 MT-ND6P03923 174 aa12.34□□□□□ -0.43
PTPRA-201ENST00000216877 CRYBB3P26998 211 aa12.34□□□□□ -0.43
PTPRA-201ENST00000216877 LGALS7P47929 136 aa12.34□□□□□ -0.43
PTPRA-201ENST00000216877 BPIFA4PQ86YQ2 179 aa12.34□□□□□ -0.43
PTPRA-201ENST00000216877 STXBP6Q8NFX7 210 aa12.34□□□□□ -0.43
PTPRA-201ENST00000216877 MRPL13Q9BYD1 178 aaKnown RBP12.34□□□□□ -0.43
PTPRA-201ENST00000216877 OR2W1Q9Y3N9 320 aa12.34□□□□□ -0.43
PTPRA-201ENST00000216877 PPIAL4CA0A0B4J2A2 164 aa12.33□□□□□ -0.44
PTPRA-201ENST00000216877 HELTA6NFD8 242 aa12.33□□□□□ -0.44
PTPRA-201ENST00000216877 ZIC3O60481 467 aa12.33□□□□□ -0.44
PTPRA-201ENST00000216877 CLPSP04118 112 aa12.33□□□□□ -0.44
PTPRA-201ENST00000216877 PPIAL4GP0DN37 164 aa12.33□□□□□ -0.44
PTPRA-201ENST00000216877 GPM6AP51674 278 aa12.33□□□□□ -0.44
PTPRA-201ENST00000216877 MEF2CQ06413 473 aaPredicted RBP12.33□□□□□ -0.44
PTPRA-201ENST00000216877 TMEM92Q6UXU6 159 aa12.33□□□□□ -0.44
PTPRA-201ENST00000216877 HS3ST6Q96QI5 342 aa12.33□□□□□ -0.44
PTPRA-201ENST00000216877 C2orf16Q68DN1 1984 aa12.33□□□□□ -0.44
PTPRA-201ENST00000216877 G3V4G9 280 aa12.33□□□□□ -0.44
PTPRA-201ENST00000216877 IGLC1P0CG04 106 aa12.33□□□□□ -0.44
PTPRA-201ENST00000216877 CENPWQ5EE01 88 aa12.33□□□□□ -0.44
PTPRA-201ENST00000216877 OR10J3Q5JRS4 329 aa12.33□□□□□ -0.44
PTPRA-201ENST00000216877 OR2K2Q8NGT1 345 aa12.33□□□□□ -0.44
PTPRA-201ENST00000216877 CT55Q8WUE5 264 aa12.33□□□□□ -0.44
PTPRA-201ENST00000216877 HINT2Q9BX68 163 aa12.33□□□□□ -0.44
PTPRA-201ENST00000216877 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.33□□□□□ -0.44
PTPRA-201ENST00000216877 TMPRSS2O15393 492 aa12.33□□□□□ -0.44
PTPRA-201ENST00000216877 CER1O95813 267 aa12.33□□□□□ -0.44
PTPRA-201ENST00000216877 GPR183P32249 361 aa12.33□□□□□ -0.44
PTPRA-201ENST00000216877 DCAF12Q5T6F0 453 aa12.33□□□□□ -0.44
PTPRA-201ENST00000216877 SLC25A47Q6Q0C1 308 aa12.33□□□□□ -0.44
PTPRA-201ENST00000216877 BHLHA15Q7RTS1 189 aaPredicted RBP12.33□□□□□ -0.44
PTPRA-201ENST00000216877 OR4P4Q8NGL7 312 aa12.33□□□□□ -0.44
PTPRA-201ENST00000216877 FAM234AQ9H0X4 552 aa12.33□□□□□ -0.44
PTPRA-201ENST00000216877 HIST1H1EP10412 219 aaKnown RBP12.32□□□□□ -0.44
PTPRA-201ENST00000216877 CA6P23280 308 aa12.32□□□□□ -0.44
PTPRA-201ENST00000216877 CD24P25063 80 aa12.32□□□□□ -0.44
PTPRA-201ENST00000216877 OR5A2Q8NGI9 324 aa12.32□□□□□ -0.44
PTPRA-201ENST00000216877 ZNF837Q96EG3 531 aaPredicted RBP12.32□□□□□ -0.44
PTPRA-201ENST00000216877 TMEM191AQ9H0A3 160 aa12.32□□□□□ -0.44
PTPRA-201ENST00000216877 TRAPPC2LQ9UL33 140 aa12.32□□□□□ -0.44
PTPRA-201ENST00000216877 TRAPPC2LH3BP13 241 aa12.32□□□□□ -0.44
PTPRA-201ENST00000216877 CD5LO43866 347 aa12.32□□□□□ -0.44
PTPRA-201ENST00000216877 IGKV1-39P01597 117 aa12.32□□□□□ -0.44
PTPRA-201ENST00000216877 HLA-DQA1P01909 254 aa12.32□□□□□ -0.44
PTPRA-201ENST00000216877 IGKV1D-39P04432 117 aa12.32□□□□□ -0.44
PTPRA-201ENST00000216877 FASLGP48023 281 aa12.32□□□□□ -0.44
PTPRA-201ENST00000216877 C9orf135Q5VTT2 229 aa12.32□□□□□ -0.44
PTPRA-201ENST00000216877 MKXQ8IYA7 352 aa12.32□□□□□ -0.44
PTPRA-201ENST00000216877 MMP17Q9ULZ9 603 aa12.32□□□□□ -0.44
PTPRA-201ENST00000216877 OR51B2Q9Y5P1 312 aa12.32□□□□□ -0.44
PTPRA-201ENST00000216877 SPCS1Q9Y6A9 102 aa12.32□□□□□ -0.44
PTPRA-201ENST00000216877 IGKV1-6A0A0C4DH72 117 aa12.32□□□□□ -0.44
PTPRA-201ENST00000216877 AESQ08117 197 aa12.32□□□□□ -0.44
PTPRA-201ENST00000216877 SLAQ13239 276 aa12.32□□□□□ -0.44
PTPRA-201ENST00000216877 TMEM136Q6ZRR5 245 aa12.32□□□□□ -0.44
PTPRA-201ENST00000216877 EAF1Q96JC9 268 aaPredicted RBP12.32□□□□□ -0.44
PTPRA-201ENST00000216877 AMY1AP04745 511 aa12.31□□□□□ -0.44
PTPRA-201ENST00000216877 GFERP55789 205 aa12.31□□□□□ -0.44
PTPRA-201ENST00000216877 ARF6P62330 175 aa12.31□□□□□ -0.44
PTPRA-201ENST00000216877 OR8B8Q15620 311 aa12.31□□□□□ -0.44
PTPRA-201ENST00000216877 LINC00173Q6ZV60 143 aa12.31□□□□□ -0.44
PTPRA-201ENST00000216877 C18orf32Q8TCD1 76 aa12.31□□□□□ -0.44
PTPRA-201ENST00000216877 PLPPR2Q96GM1 343 aa12.31□□□□□ -0.44
PTPRA-201ENST00000216877 SFXN3Q9BWM7 321 aa12.31□□□□□ -0.44
PTPRA-201ENST00000216877 NPVFQ9HCQ7 196 aa12.31□□□□□ -0.44
PTPRA-201ENST00000216877 K7EQM0 130 aa12.31□□□□□ -0.44
PTPRA-201ENST00000216877 IGHV3-9P01782 118 aa12.31□□□□□ -0.44
PTPRA-201ENST00000216877 B4GALT1P15291 398 aa12.31□□□□□ -0.44
PTPRA-201ENST00000216877 ARG2P78540 354 aa12.31□□□□□ -0.44
PTPRA-201ENST00000216877 OR10AG1Q8NH19 301 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms