RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 RTL8AQ9BWD3 113 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 CXXC4Q9H2H0 198 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 IER3IP1Q9Y5U9 82 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 IGF2RP11717 2491 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 UPK2O00526 184 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 EDNRAP25101 427 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 NMUP48645 174 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 BHLHA9Q7RTU4 235 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 MAVSQ7Z434 540 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 C1QL4Q86Z23 238 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 HCAR1Q9BXC0 346 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 TMEM106BQ9NUM4 274 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 MARCH5Q9NX47 278 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 C19orf25Q9UFG5 118 aaPredicted RBP3.04□□□□□ -1.92
SCN1A-221ENST00000641996 ASXL1Q8IXJ9 1541 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 OVOS2A0A0G2JMS6 1433 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 TRAV9-2A0A087WT02 112 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 FAM90A7PA6NKC0 464 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 FAM90A22PA8MWA6 464 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 FAM90A12PA8MX19 464 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 FAM90A23PA8MXZ1 464 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 F8VVB4 439 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 F8VWA3 439 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 APOC2P02655 101 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 LOXL3P58215 753 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 NABP1Q96AH0 204 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 MGST2Q99735 147 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 TMEM191AQ9H0A3 160 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 MROH1Q8NDA8 1641 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP3.04□□□□□ -1.92
SCN1A-221ENST00000641996 EDIL3O43854 480 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 CPSF4O95639 269 aaKnown RBP3.04□□□□□ -1.92
SCN1A-221ENST00000641996 PAQR6Q6TCH4 344 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 RFESDQ8TAC1 157 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 CACFD1Q9UGQ2 172 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 TTC37Q6PGP7 1564 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 UBE2L5PA0A1B0GUS4 154 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 CLDN34H7C241 214 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 SMIM22K7EJ46 135 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 HLA-DRB1P01911 266 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 TESK1Q15569 626 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 NDUFB11Q9NX14 153 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 RPL36Q9Y3U8 105 aaKnown RBP3.04□□□□□ -1.92
SCN1A-221ENST00000641996 RGPD8O14715 1765 aaPredicted RBP3.04□□□□□ -1.92
SCN1A-221ENST00000641996 RGPD5Q99666 1765 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 PRDM15P57071 1507 aaPredicted RBP3.04□□□□□ -1.92
SCN1A-221ENST00000641996 PHLPP1O60346 1717 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 HLA-DQA1P01909 254 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 CXCL10P02778 98 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 RND2P52198 227 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 SEC11AP67812 179 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 ADORA2A-AS1P86434 159 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 SP4Q02446 784 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 OR1L1Q8NH94 360 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 MRPL18Q9H0U6 180 aaKnown RBP3.04□□□□□ -1.92
SCN1A-221ENST00000641996 EHFQ9NZC4 300 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 ARHGEF12Q9NZN5 1544 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 A0A0U1RQS6 177 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 CXorf49A8MYA2 514 aaPredicted RBP3.03□□□□□ -1.92
SCN1A-221ENST00000641996 TOMM40O96008 361 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 LOXL1Q08397 574 aaPredicted RBP3.03□□□□□ -1.92
SCN1A-221ENST00000641996 RBMY1FQ15415 496 aaKnown RBP3.03□□□□□ -1.92
SCN1A-221ENST00000641996 CEACAM16Q2WEN9 425 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 CD300LDQ6UXZ3 194 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 LINC00305Q7Z4B0 112 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 CUX1P39880 1505 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 DPRXA6NFQ7 191 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 WNT11O96014 354 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 IGLC6P0CF74 106 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 ERVK11-1P61568 191 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 SP6Q3SY56 376 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 OR2T6Q8NHC8 308 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 PBOV1Q9GZY1 135 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 TRBV4-1A0A0J9YWV2 114 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 CTSEP14091 401 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 TIAL1Q01085 375 aaKnown RBP eCLIP3.03□□□□□ -1.92
SCN1A-221ENST00000641996 TMEM25Q86YD3 366 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 PGBD5Q8N414 524 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 SIGLEC12Q96PQ1 595 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 WDR13Q9H1Z4 485 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 ZNF706Q9Y5V0 76 aaPredicted RBP3.03□□□□□ -1.92
SCN1A-221ENST00000641996 SMIM10L1P0DMW3 83 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 GATA2P23769 480 aaPredicted RBP3.03□□□□□ -1.92
SCN1A-221ENST00000641996 TDRG1Q3Y452 100 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 CENPWQ5EE01 88 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 HEPN1Q6WQI6 88 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 HOGA1Q86XE5 327 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 LRRC25Q8N386 305 aaPredicted RBP3.03□□□□□ -1.92
SCN1A-221ENST00000641996 SMIM10Q96HG1 83 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 TMEM243Q9BU79 118 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 FOCADQ5VW36 1801 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 PGPA6NDG6 321 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 WIPF1O43516 503 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 PROSCO94903 275 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 CD70P32970 193 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 CLDN15P56746 228 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 UBE2G1P62253 170 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 Q6ZVL8 140 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 OR10A2Q9H208 303 aa3.03□□□□□ -1.92
SCN1A-221ENST00000641996 COL1A2P08123 1366 aa3.03□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms