RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 H3BUA1 57 aa12.34□□□□□ -0.43
CLN3-264ENST00000637985 CNIH1O95406 144 aa12.34□□□□□ -0.43
CLN3-264ENST00000637985 IGLV2-23P01705 113 aa12.34□□□□□ -0.43
CLN3-264ENST00000637985 CRYGBP07316 175 aa12.34□□□□□ -0.43
CLN3-264ENST00000637985 CTXN2P0C2S0 81 aa12.34□□□□□ -0.43
CLN3-264ENST00000637985 LCN12Q6JVE5 192 aa12.34□□□□□ -0.43
CLN3-264ENST00000637985 RHOVQ96L33 236 aa12.34□□□□□ -0.43
CLN3-264ENST00000637985 HARBI1Q96MB7 349 aa12.34□□□□□ -0.43
CLN3-264ENST00000637985 TMEM68Q96MH6 324 aa12.34□□□□□ -0.43
CLN3-264ENST00000637985 DAPK2Q9UIK4 370 aa12.34□□□□□ -0.43
CLN3-264ENST00000637985 DNAH6Q9C0G6 4158 aa12.34□□□□□ -0.43
CLN3-264ENST00000637985 IGKV1D-8A0A087WSZ0 117 aa12.33□□□□□ -0.44
CLN3-264ENST00000637985 SHOXO15266 292 aa12.33□□□□□ -0.44
CLN3-264ENST00000637985 DUTP33316 252 aaKnown RBP12.33□□□□□ -0.44
CLN3-264ENST00000637985 TPPP2P59282 170 aa12.33□□□□□ -0.44
CLN3-264ENST00000637985 SFXN4Q6P4A7 337 aa12.33□□□□□ -0.44
CLN3-264ENST00000637985 Q8N402 240 aa12.33□□□□□ -0.44
CLN3-264ENST00000637985 BVESQ8NE79 360 aa12.33□□□□□ -0.44
CLN3-264ENST00000637985 OR9G4Q8NGQ1 327 aa12.33□□□□□ -0.44
CLN3-264ENST00000637985 GRPEL2Q8TAA5 225 aa12.33□□□□□ -0.44
CLN3-264ENST00000637985 C5orf30Q96GV9 206 aa12.33□□□□□ -0.44
CLN3-264ENST00000637985 MS4A10Q96PG2 267 aa12.33□□□□□ -0.44
CLN3-264ENST00000637985 ELF5Q9UKW6 265 aaPredicted RBP12.33□□□□□ -0.44
CLN3-264ENST00000637985 RRP15Q9Y3B9 282 aaKnown RBP12.33□□□□□ -0.44
CLN3-264ENST00000637985 IZUMO1RA6ND01 250 aa12.32□□□□□ -0.44
CLN3-264ENST00000637985 SLC22A5O76082 557 aa12.32□□□□□ -0.44
CLN3-264ENST00000637985 TRGV3P03979 118 aa12.32□□□□□ -0.44
CLN3-264ENST00000637985 ZP3P21754 424 aa12.32□□□□□ -0.44
CLN3-264ENST00000637985 SDC2P34741 201 aa12.32□□□□□ -0.44
CLN3-264ENST00000637985 SCAND1P57086 179 aa12.32□□□□□ -0.44
CLN3-264ENST00000637985 SSBP2P81877 361 aaPredicted RBP12.32□□□□□ -0.44
CLN3-264ENST00000637985 KLF5Q13887 457 aaPredicted RBP12.32□□□□□ -0.44
CLN3-264ENST00000637985 TEX45Q8NA69 505 aa12.32□□□□□ -0.44
CLN3-264ENST00000637985 POC5Q8NA72 575 aa12.32□□□□□ -0.44
CLN3-264ENST00000637985 OR51E2Q9H255 320 aa12.32□□□□□ -0.44
CLN3-264ENST00000637985 FAT2Q9NYQ8 4349 aa12.32□□□□□ -0.44
CLN3-264ENST00000637985 SRRM4A7MD48 611 aaKnown RBP12.31□□□□□ -0.44
CLN3-264ENST00000637985 TPPPO94811 219 aa12.31□□□□□ -0.44
CLN3-264ENST00000637985 CD81P60033 236 aa12.31□□□□□ -0.44
CLN3-264ENST00000637985 PJVKQ0ZLH3 352 aa12.31□□□□□ -0.44
CLN3-264ENST00000637985 VMA21Q3ZAQ7 101 aa12.31□□□□□ -0.44
CLN3-264ENST00000637985 CNIH2Q6PI25 160 aa12.31□□□□□ -0.44
CLN3-264ENST00000637985 ZNF645Q8N7E2 425 aa12.31□□□□□ -0.44
CLN3-264ENST00000637985 OSR1Q8TAX0 266 aaPredicted RBP12.31□□□□□ -0.44
CLN3-264ENST00000637985 LGALS14Q8TCE9 139 aa12.31□□□□□ -0.44
CLN3-264ENST00000637985 RANGRFQ9HD47 186 aaPredicted RBP12.31□□□□□ -0.44
CLN3-264ENST00000637985 ZNF355PQ9NSJ1 428 aa12.31□□□□□ -0.44
CLN3-264ENST00000637985 SIGLEC8Q9NYZ4 499 aa12.31□□□□□ -0.44
CLN3-264ENST00000637985 KLK5Q9Y337 293 aaPredicted RBP12.31□□□□□ -0.44
CLN3-264ENST00000637985 OR2W1Q9Y3N9 320 aa12.31□□□□□ -0.44
CLN3-264ENST00000637985 DYNC1H1Q14204 4646 aaKnown RBP12.3□□□□□ -0.44
CLN3-264ENST00000637985 A0A0G2JLM5 398 aa12.3□□□□□ -0.44
CLN3-264ENST00000637985 TMEM235A6NFC5 223 aa12.3□□□□□ -0.44
CLN3-264ENST00000637985 LINC00473A8K010 186 aa12.3□□□□□ -0.44
CLN3-264ENST00000637985 HLA-DQB1P01920 261 aa12.3□□□□□ -0.44
CLN3-264ENST00000637985 GNG2P59768 71 aa12.3□□□□□ -0.44
CLN3-264ENST00000637985 UBE2KP61086 200 aa12.3□□□□□ -0.44
CLN3-264ENST00000637985 DEFB125Q8N687 156 aa12.3□□□□□ -0.44
CLN3-264ENST00000637985 OR5T1Q8NG75 326 aa12.3□□□□□ -0.44
CLN3-264ENST00000637985 NUDCD2Q8WVJ2 157 aa12.3□□□□□ -0.44
CLN3-264ENST00000637985 NEURL2Q9BR09 285 aa12.3□□□□□ -0.44
CLN3-264ENST00000637985 KRTAP4-5Q9BYR2 181 aa12.3□□□□□ -0.44
CLN3-264ENST00000637985 RHBDL2Q9NX52 303 aa12.3□□□□□ -0.44
CLN3-264ENST00000637985 ETV7Q9Y603 341 aa12.3□□□□□ -0.44
CLN3-264ENST00000637985 DNAH2Q9P225 4427 aa12.29□□□□□ -0.44
CLN3-264ENST00000637985 C13orf42A0A1B0GVH6 325 aa12.29□□□□□ -0.44
CLN3-264ENST00000637985 TMEM127O75204 238 aa12.29□□□□□ -0.44
CLN3-264ENST00000637985 CRYZL1O95825 349 aa12.29□□□□□ -0.44
CLN3-264ENST00000637985 CSN3P07498 182 aa12.29□□□□□ -0.44
CLN3-264ENST00000637985 CD36P16671 472 aa12.29□□□□□ -0.44
CLN3-264ENST00000637985 MECP2P51608 486 aaKnown RBP12.29□□□□□ -0.44
CLN3-264ENST00000637985 EWSR1Q01844 656 aaKnown RBP eCLIP12.29□□□□□ -0.44
CLN3-264ENST00000637985 MXD1Q05195 221 aa12.29□□□□□ -0.44
CLN3-264ENST00000637985 KCTD21Q4G0X4 260 aa12.29□□□□□ -0.44
CLN3-264ENST00000637985 OVOL2Q9BRP0 275 aa12.29□□□□□ -0.44
CLN3-264ENST00000637985 A0A0A6YYH2 397 aa12.28□□□□□ -0.44
CLN3-264ENST00000637985 LOC100506127A0A0U1RQW1 187 aa12.28□□□□□ -0.44
CLN3-264ENST00000637985 A6NJ64 397 aa12.28□□□□□ -0.44
CLN3-264ENST00000637985 SSX5O60225 188 aa12.28□□□□□ -0.44
CLN3-264ENST00000637985 CLEC2LP0C7M8 214 aa12.28□□□□□ -0.44
CLN3-264ENST00000637985 NFYAP23511 347 aaPredicted RBP12.28□□□□□ -0.44
CLN3-264ENST00000637985 PRSS8Q16651 343 aa12.28□□□□□ -0.44
CLN3-264ENST00000637985 MRGPRG-AS1Q2M3A8 158 aa12.28□□□□□ -0.44
CLN3-264ENST00000637985 RNF167Q9H6Y7 350 aa12.28□□□□□ -0.44
CLN3-264ENST00000637985 SRD5A3Q9H8P0 318 aa12.28□□□□□ -0.44
CLN3-264ENST00000637985 ANXA10Q9UJ72 324 aa12.28□□□□□ -0.44
CLN3-264ENST00000637985 RBMX2Q9Y388 322 aaKnown RBP12.28□□□□□ -0.44
CLN3-264ENST00000637985 PRELID3BQ9Y3B1 194 aa12.28□□□□□ -0.44
CLN3-264ENST00000637985 J3QRK9 145 aa12.27□□□□□ -0.45
CLN3-264ENST00000637985 CREBL2O60519 120 aaPredicted RBP12.27□□□□□ -0.45
CLN3-264ENST00000637985 CD7P09564 240 aa12.27□□□□□ -0.45
CLN3-264ENST00000637985 AADACP22760 399 aa12.27□□□□□ -0.45
CLN3-264ENST00000637985 SYNJ2BPP57105 145 aa12.27□□□□□ -0.45
CLN3-264ENST00000637985 NEDD8Q15843 81 aa12.27□□□□□ -0.45
CLN3-264ENST00000637985 IDNKQ5T6J7 187 aa12.27□□□□□ -0.45
CLN3-264ENST00000637985 KCTD9Q7L273 389 aa12.27□□□□□ -0.45
CLN3-264ENST00000637985 LAX1Q8IWV1 398 aa12.27□□□□□ -0.45
CLN3-264ENST00000637985 PHB2Q99623 299 aa12.27□□□□□ -0.45
CLN3-264ENST00000637985 HSD17B10Q99714 261 aaKnown RBP12.27□□□□□ -0.45
CLN3-264ENST00000637985 TINAGL1Q9GZM7 467 aaPredicted RBP12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms