RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 LTC4SQ16873 150 aa15.13■□□□□ 0.01
CLN3-263ENST00000637871 CENPVQ7Z7K6 275 aaPredicted RBP15.13■□□□□ 0.01
CLN3-263ENST00000637871 THNSL2Q86YJ6 484 aa15.13■□□□□ 0.01
CLN3-263ENST00000637871 OR10P1Q8NGE3 313 aa15.13■□□□□ 0.01
CLN3-263ENST00000637871 MS4A7Q9GZW8 240 aaPredicted RBP15.13■□□□□ 0.01
CLN3-263ENST00000637871 RPUSD1Q9UJJ7 312 aaKnown RBP15.13■□□□□ 0.01
CLN3-263ENST00000637871 ABCA12Q86UK0 2595 aa15.12■□□□□ 0.01
CLN3-263ENST00000637871 PLCE1Q9P212 2302 aa15.12■□□□□ 0.01
CLN3-263ENST00000637871 H3BP45 60 aa15.12■□□□□ 0.01
CLN3-263ENST00000637871 FCGR3BO75015 233 aa15.12■□□□□ 0.01
CLN3-263ENST00000637871 PROP1O75360 226 aa15.12■□□□□ 0.01
CLN3-263ENST00000637871 KRTAP10-9P60411 292 aa15.12■□□□□ 0.01
CLN3-263ENST00000637871 SLC38A11Q08AI6 406 aa15.12■□□□□ 0.01
CLN3-263ENST00000637871 OR2B11Q5JQS5 317 aa15.12■□□□□ 0.01
CLN3-263ENST00000637871 FAM201AQ5SY85 155 aa15.12■□□□□ 0.01
CLN3-263ENST00000637871 ZNF439Q8NDP4 499 aa15.12■□□□□ 0.01
CLN3-263ENST00000637871 DEFB108BQ8NET1 73 aa15.12■□□□□ 0.01
CLN3-263ENST00000637871 DDB2Q92466 427 aa15.12■□□□□ 0.01
CLN3-263ENST00000637871 TMEM204Q9BSN7 226 aa15.12■□□□□ 0.01
CLN3-263ENST00000637871 TMEM147Q9BVK8 224 aa15.12■□□□□ 0.01
CLN3-263ENST00000637871 WDR61Q9GZS3 305 aaKnown RBP15.12■□□□□ 0.01
CLN3-263ENST00000637871 EIF5A2Q9GZV4 153 aaKnown RBP15.12■□□□□ 0.01
CLN3-263ENST00000637871 DYNLRB1Q9NP97 96 aa15.12■□□□□ 0.01
CLN3-263ENST00000637871 KAAG1Q9UBP8 84 aa15.12■□□□□ 0.01
CLN3-263ENST00000637871 FAM96BQ9Y3D0 163 aa15.12■□□□□ 0.01
CLN3-263ENST00000637871 CSMD2Q7Z408 3487 aa15.11■□□□□ 0.01
CLN3-263ENST00000637871 FAM157AC9JC47 383 aa15.11■□□□□ 0.01
CLN3-263ENST00000637871 DNASE2O00115 360 aaPredicted RBP15.11■□□□□ 0.01
CLN3-263ENST00000637871 AGPAT2O15120 278 aa15.11■□□□□ 0.01
CLN3-263ENST00000637871 RBMXL2O75526 392 aaKnown RBP15.11■□□□□ 0.01
CLN3-263ENST00000637871 DAOP14920 347 aa15.11■□□□□ 0.01
CLN3-263ENST00000637871 MRPS11P82912 194 aaKnown RBP15.11■□□□□ 0.01
CLN3-263ENST00000637871 CT45A1Q5HYN5 189 aa15.11■□□□□ 0.01
CLN3-263ENST00000637871 DHRS7BQ6IAN0 325 aaPredicted RBP15.11■□□□□ 0.01
CLN3-263ENST00000637871 FAM53AQ6NSI3 398 aaPredicted RBP15.11■□□□□ 0.01
CLN3-263ENST00000637871 ATRAIDQ6UW56 229 aa15.11■□□□□ 0.01
CLN3-263ENST00000637871 ZNF429Q86V71 674 aa15.11■□□□□ 0.01
CLN3-263ENST00000637871 OR4A16Q8NH70 328 aa15.11■□□□□ 0.01
CLN3-263ENST00000637871 CT45A3Q8NHU0 189 aa15.11■□□□□ 0.01
CLN3-263ENST00000637871 NRGNQ92686 78 aa15.11■□□□□ 0.01
CLN3-263ENST00000637871 SCRT1Q9BWW7 348 aa15.11■□□□□ 0.01
CLN3-263ENST00000637871 TMEM231Q9H6L2 316 aa15.11■□□□□ 0.01
CLN3-263ENST00000637871 TMEM106BQ9NUM4 274 aa15.11■□□□□ 0.01
CLN3-263ENST00000637871 SLC25A10Q9UBX3 287 aaPredicted RBP15.11■□□□□ 0.01
CLN3-263ENST00000637871 CEBPZOSA8MTT3 80 aa15.1■□□□□ 0.01
CLN3-263ENST00000637871 MBP02144 154 aa15.1■□□□□ 0.01
CLN3-263ENST00000637871 ZNF134P52741 427 aa15.1■□□□□ 0.01
CLN3-263ENST00000637871 POU2AF1Q16633 256 aa15.1■□□□□ 0.01
CLN3-263ENST00000637871 PRAMEF5Q5TYX0 476 aa15.1■□□□□ 0.01
CLN3-263ENST00000637871 C8orf31Q8N9H6 132 aa15.1■□□□□ 0.01
CLN3-263ENST00000637871 SLC35B3Q9H1N7 401 aa15.1■□□□□ 0.01
CLN3-263ENST00000637871 CACNA1DQ01668 2161 aa15.1■□□□□ 0.01
CLN3-263ENST00000637871 E7EQL1 145 aa15.1■□□□□ 0.01
CLN3-263ENST00000637871 TNFRSF13BO14836 293 aaPredicted RBP15.1■□□□□ 0.01
CLN3-263ENST00000637871 TMPRSS2O15393 492 aa15.1■□□□□ 0.01
CLN3-263ENST00000637871 NDUFB3O43676 98 aa15.1■□□□□ 0.01
CLN3-263ENST00000637871 HRASP01112 189 aa15.1■□□□□ 0.01
CLN3-263ENST00000637871 PMS2P11Q13670 270 aa15.1■□□□□ 0.01
CLN3-263ENST00000637871 GUCA2BQ16661 112 aa15.1■□□□□ 0.01
CLN3-263ENST00000637871 LRRC10Q5BKY1 277 aa15.1■□□□□ 0.01
CLN3-263ENST00000637871 SLC25A48Q6ZT89 311 aaKnown RBP15.1■□□□□ 0.01
CLN3-263ENST00000637871 HAPLN4Q86UW8 402 aa15.1■□□□□ 0.01
CLN3-263ENST00000637871 SREK1IP1Q8N9Q2 155 aaPredicted RBP15.1■□□□□ 0.01
CLN3-263ENST00000637871 MBD3L1Q8WWY6 194 aa15.1■□□□□ 0.01
CLN3-263ENST00000637871 TAF15Q92804 592 aaKnown RBP eCLIP15.1■□□□□ 0.01
CLN3-263ENST00000637871 OR4C12Q96R67 309 aa15.1■□□□□ 0.01
CLN3-263ENST00000637871 GGACTQ9BVM4 153 aa15.1■□□□□ 0.01
CLN3-263ENST00000637871 UBTD1Q9HAC8 227 aa15.1■□□□□ 0.01
CLN3-263ENST00000637871 AKAP6Q13023 2319 aa15.09■□□□□ 0.01
CLN3-263ENST00000637871 APCP25054 2843 aa15.09■□□□□ 0.01
CLN3-263ENST00000637871 FHITP49789 147 aa15.09■□□□□ 0.01
CLN3-263ENST00000637871 ARL16Q0P5N6 197 aa15.09■□□□□ 0.01
CLN3-263ENST00000637871 VWC2Q2TAL6 325 aa15.09■□□□□ 0.01
CLN3-263ENST00000637871 ZNF672Q499Z4 452 aaPredicted RBP15.09■□□□□ 0.01
CLN3-263ENST00000637871 FAM71F2Q6NXP2 309 aa15.09■□□□□ 0.01
CLN3-263ENST00000637871 SPSB3Q6PJ21 355 aa15.09■□□□□ 0.01
CLN3-263ENST00000637871 HEPN1Q6WQI6 88 aa15.09■□□□□ 0.01
CLN3-263ENST00000637871 FAM216BQ8N7L0 139 aa15.09■□□□□ 0.01
CLN3-263ENST00000637871 ZNF251Q9BRH9 671 aa15.09■□□□□ 0.01
CLN3-263ENST00000637871 FLNBO75369 2602 aaKnown RBP15.08■□□□□ 0.01
CLN3-263ENST00000637871 RAI1Q7Z5J4 1906 aaPredicted RBP15.08■□□□□ 0
CLN3-263ENST00000637871 RBFOX3A6NFN3 312 aa15.08■□□□□ 0
CLN3-263ENST00000637871 TSPAN4O14817 238 aa15.08■□□□□ 0
CLN3-263ENST00000637871 SELLP14151 372 aa15.08■□□□□ 0
CLN3-263ENST00000637871 NDUFB7P17568 137 aa15.08■□□□□ 0
CLN3-263ENST00000637871 RPL31P62899 125 aaKnown RBP15.08■□□□□ 0
CLN3-263ENST00000637871 RUNX1Q01196 453 aa15.08■□□□□ 0
CLN3-263ENST00000637871 TCF23Q7RTU1 214 aa15.08■□□□□ 0
CLN3-263ENST00000637871 FBXO7Q9Y3I1 522 aa15.08■□□□□ 0
CLN3-263ENST00000637871 POLQO75417 2590 aa15.08■□□□□ 0
CLN3-263ENST00000637871 PMS2P5A8MQ11 134 aa15.07■□□□□ 0
CLN3-263ENST00000637871 NDUFS6O75380 124 aaKnown RBP15.07■□□□□ 0
CLN3-263ENST00000637871 IFNA17P01571 189 aa15.07■□□□□ 0
CLN3-263ENST00000637871 ATP5IP56385 69 aaPredicted RBP15.07■□□□□ 0
CLN3-263ENST00000637871 KHDC3LQ587J8 217 aa15.07■□□□□ 0
CLN3-263ENST00000637871 RPL39P5Q59GN2 51 aa15.07■□□□□ 0
CLN3-263ENST00000637871 TMEM41BQ5BJD5 291 aa15.07■□□□□ 0
CLN3-263ENST00000637871 CLRN3Q8NCR9 226 aa15.07■□□□□ 0
CLN3-263ENST00000637871 ZNF714Q96N38 554 aa15.07■□□□□ 0
CLN3-263ENST00000637871 CISD1Q9NZ45 108 aaKnown RBP15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms