RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 HERV-K104P61576 105 aa15.02□□□□□ -0.01
CLN3-260ENST00000637578 CX3CL1P78423 397 aa15.02□□□□□ -0.01
CLN3-260ENST00000637578 NDPQ00604 133 aa15.02□□□□□ -0.01
CLN3-260ENST00000637578 ZNF45Q02386 682 aa15.02□□□□□ -0.01
CLN3-260ENST00000637578 TMEM17Q86X19 198 aa15.02□□□□□ -0.01
CLN3-260ENST00000637578 PDPNQ86YL7 162 aa15.02□□□□□ -0.01
CLN3-260ENST00000637578 MOB3AQ96BX8 217 aa15.02□□□□□ -0.01
CLN3-260ENST00000637578 SDHCQ99643 169 aaPredicted RBP15.02□□□□□ -0.01
CLN3-260ENST00000637578 WSB1Q9Y6I7 421 aa15.02□□□□□ -0.01
CLN3-260ENST00000637578 TRAV41A0A0B4J266 112 aa15.01□□□□□ -0.01
CLN3-260ENST00000637578 CCL24O00175 119 aa15.01□□□□□ -0.01
CLN3-260ENST00000637578 IGLV2-14P01704 120 aa15.01□□□□□ -0.01
CLN3-260ENST00000637578 IFNA6P05013 189 aa15.01□□□□□ -0.01
CLN3-260ENST00000637578 EGR2P11161 476 aaPredicted RBP15.01□□□□□ -0.01
CLN3-260ENST00000637578 PSG5Q15238 335 aa15.01□□□□□ -0.01
CLN3-260ENST00000637578 FAAP20Q6NZ36 180 aa15.01□□□□□ -0.01
CLN3-260ENST00000637578 GDPD1Q8N9F7 314 aa15.01□□□□□ -0.01
CLN3-260ENST00000637578 SLC5A7Q9GZV3 580 aa15.01□□□□□ -0.01
CLN3-260ENST00000637578 FXYD6Q9H0Q3 95 aa15.01□□□□□ -0.01
CLN3-260ENST00000637578 KLK15Q9H2R5 256 aa15.01□□□□□ -0.01
CLN3-260ENST00000637578 PARP11Q9NR21 331 aa15.01□□□□□ -0.01
CLN3-260ENST00000637578 AURKAIP1Q9NWT8 199 aaPredicted RBP15.01□□□□□ -0.01
CLN3-260ENST00000637578 FBXO7Q9Y3I1 522 aa15.01□□□□□ -0.01
CLN3-260ENST00000637578 NUBP2Q9Y5Y2 271 aa15.01□□□□□ -0.01
CLN3-260ENST00000637578 SLC22A5O76082 557 aa15□□□□□ -0.01
CLN3-260ENST00000637578 SPDEFO95238 335 aa15□□□□□ -0.01
CLN3-260ENST00000637578 AKAIN1P0CW23 69 aa15□□□□□ -0.01
CLN3-260ENST00000637578 EGFEM1PQ0D2K5 195 aa15□□□□□ -0.01
CLN3-260ENST00000637578 ARRDC1Q8N5I2 433 aa15□□□□□ -0.01
CLN3-260ENST00000637578 C4orf3Q8WVX3 66 aa15□□□□□ -0.01
CLN3-260ENST00000637578 CCL28Q9NRJ3 127 aa15□□□□□ -0.01
CLN3-260ENST00000637578 MEF2DQ14814 521 aa14.99□□□□□ -0.01
CLN3-260ENST00000637578 BAK1Q16611 211 aa14.99□□□□□ -0.01
CLN3-260ENST00000637578 ZNF562Q6V9R5 426 aa14.99□□□□□ -0.01
CLN3-260ENST00000637578 OR4C16Q8NGL9 310 aa14.99□□□□□ -0.01
CLN3-260ENST00000637578 FLYWCH2Q96CP2 140 aaKnown RBP14.99□□□□□ -0.01
CLN3-260ENST00000637578 UBE2E2Q96LR5 201 aa14.99□□□□□ -0.01
CLN3-260ENST00000637578 DUX3Q96PT4 197 aa14.99□□□□□ -0.01
CLN3-260ENST00000637578 TSNAXQ99598 290 aaKnown RBP14.99□□□□□ -0.01
CLN3-260ENST00000637578 MCRIP2Q9BUT9 160 aaKnown RBP14.99□□□□□ -0.01
CLN3-260ENST00000637578 APOA2P02652 100 aa14.98□□□□□ -0.01
CLN3-260ENST00000637578 ZNF735P0CB33 412 aa14.98□□□□□ -0.01
CLN3-260ENST00000637578 RPS16P62249 146 aaKnown RBP14.98□□□□□ -0.01
CLN3-260ENST00000637578 TAGLNQ01995 201 aaKnown RBP14.98□□□□□ -0.01
CLN3-260ENST00000637578 KLF9Q13886 244 aaPredicted RBP14.98□□□□□ -0.01
CLN3-260ENST00000637578 AADACL3Q5VUY0 350 aa14.98□□□□□ -0.01
CLN3-260ENST00000637578 ZNF491Q8N8L2 437 aa14.98□□□□□ -0.01
CLN3-260ENST00000637578 METTL1Q9UBP6 276 aaKnown RBP14.98□□□□□ -0.01
CLN3-260ENST00000637578 IGLV2-23P01705 113 aa14.98□□□□□ -0.01
CLN3-260ENST00000637578 DUTP33316 252 aaKnown RBP14.98□□□□□ -0.01
CLN3-260ENST00000637578 RAB9AP51151 201 aa14.98□□□□□ -0.01
CLN3-260ENST00000637578 KRTAP10-11P60412 298 aa14.98□□□□□ -0.01
CLN3-260ENST00000637578 RUNX1Q01196 453 aa14.98□□□□□ -0.01
CLN3-260ENST00000637578 FHL3Q13643 280 aa14.98□□□□□ -0.01
CLN3-260ENST00000637578 PLGLAQ15195 96 aa14.98□□□□□ -0.01
CLN3-260ENST00000637578 DEFB136Q30KP8 78 aa14.98□□□□□ -0.01
CLN3-260ENST00000637578 TMEM65Q6PI78 240 aa14.98□□□□□ -0.01
CLN3-260ENST00000637578 ZNF818PQ6ZRF7 136 aa14.98□□□□□ -0.01
CLN3-260ENST00000637578 LHFPL1Q86WI0 220 aa14.98□□□□□ -0.01
CLN3-260ENST00000637578 TOMM5Q8N4H5 51 aa14.98□□□□□ -0.01
CLN3-260ENST00000637578 TCTEX1D1Q8N7M0 179 aa14.98□□□□□ -0.01
CLN3-260ENST00000637578 S100ZQ8WXG8 99 aa14.98□□□□□ -0.01
CLN3-260ENST00000637578 GPR61Q9BZJ8 451 aa14.98□□□□□ -0.01
CLN3-260ENST00000637578 SLC35D1Q9NTN3 355 aa14.98□□□□□ -0.01
CLN3-260ENST00000637578 LINC00473A8K010 186 aa14.97□□□□□ -0.01
CLN3-260ENST00000637578 I3L521 148 aa14.97□□□□□ -0.01
CLN3-260ENST00000637578 SOX15O60248 233 aa14.97□□□□□ -0.01
CLN3-260ENST00000637578 CRYGBP07316 175 aa14.97□□□□□ -0.01
CLN3-260ENST00000637578 GNRHRP30968 328 aa14.97□□□□□ -0.01
CLN3-260ENST00000637578 LGALS7P47929 136 aa14.97□□□□□ -0.01
CLN3-260ENST00000637578 AP3S2P59780 193 aa14.97□□□□□ -0.01
CLN3-260ENST00000637578 EIF4EBP1Q13541 118 aaPredicted RBP14.97□□□□□ -0.01
CLN3-260ENST00000637578 MSMO1Q15800 293 aa14.97□□□□□ -0.01
CLN3-260ENST00000637578 SCGB2B2Q4G0G5 96 aa14.97□□□□□ -0.01
CLN3-260ENST00000637578 DDB2Q92466 427 aa14.97□□□□□ -0.01
CLN3-260ENST00000637578 GPHA2Q96T91 129 aa14.97□□□□□ -0.01
CLN3-260ENST00000637578 DISC1C4P0D8 188 aa14.96□□□□□ -0.01
CLN3-260ENST00000637578 TNFSF12O43508 249 aa14.96□□□□□ -0.01
CLN3-260ENST00000637578 AKIRIN2Q53H80 203 aa14.96□□□□□ -0.01
CLN3-260ENST00000637578 TMEM177Q53S58 311 aa14.96□□□□□ -0.01
CLN3-260ENST00000637578 TRIQKQ629K1 86 aa14.96□□□□□ -0.01
CLN3-260ENST00000637578 VSIG4Q9Y279 399 aa14.96□□□□□ -0.01
CLN3-260ENST00000637578 CA2P00918 260 aa14.95□□□□□ -0.02
CLN3-260ENST00000637578 RPL30P62888 115 aaKnown RBP14.95□□□□□ -0.02
CLN3-260ENST00000637578 TMEM267Q0VDI3 215 aaPredicted RBP14.95□□□□□ -0.02
CLN3-260ENST00000637578 ZNF57Q68EA5 555 aaPredicted RBP14.95□□□□□ -0.02
CLN3-260ENST00000637578 BVESQ8NE79 360 aa14.95□□□□□ -0.02
CLN3-260ENST00000637578 OR51S1Q8NGJ8 323 aa14.95□□□□□ -0.02
CLN3-260ENST00000637578 TERB2Q8NHR7 220 aa14.95□□□□□ -0.02
CLN3-260ENST00000637578 MRAPQ8TCY5 172 aa14.95□□□□□ -0.02
CLN3-260ENST00000637578 ADTRPQ96IZ2 230 aa14.95□□□□□ -0.02
CLN3-260ENST00000637578 CLCC1Q96S66 551 aa14.95□□□□□ -0.02
CLN3-260ENST00000637578 GNB4Q9HAV0 340 aa14.95□□□□□ -0.02
CLN3-260ENST00000637578 HRASLSQ9HDD0 168 aa14.95□□□□□ -0.02
CLN3-260ENST00000637578 TPSG1Q9NRR2 321 aa14.95□□□□□ -0.02
CLN3-260ENST00000637578 MCUBQ9NWR8 336 aa14.95□□□□□ -0.02
CLN3-260ENST00000637578 FOXA2Q9Y261 457 aaPredicted RBP14.95□□□□□ -0.02
CLN3-260ENST00000637578 SLC25A17O43808 307 aa14.94□□□□□ -0.02
CLN3-260ENST00000637578 RRASP10301 218 aa14.94□□□□□ -0.02
CLN3-260ENST00000637578 IL7P13232 177 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms