RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 TRAV41A0A0B4J266 112 aa14.34□□□□□ -0.11
CLN3-259ENST00000637551 H3BUA1 57 aa14.34□□□□□ -0.11
CLN3-259ENST00000637551 GPR31O00270 319 aa14.34□□□□□ -0.11
CLN3-259ENST00000637551 FCGR3BO75015 233 aa14.34□□□□□ -0.11
CLN3-259ENST00000637551 TNFSF8P32971 234 aa14.34□□□□□ -0.11
CLN3-259ENST00000637551 LINC00205P59089 165 aa14.34□□□□□ -0.11
CLN3-259ENST00000637551 TAS2R31P59538 309 aa14.34□□□□□ -0.11
CLN3-259ENST00000637551 FXYD4P59646 89 aa14.34□□□□□ -0.11
CLN3-259ENST00000637551 RPL23AP62750 156 aaKnown RBP14.34□□□□□ -0.11
CLN3-259ENST00000637551 RPL30P62888 115 aaKnown RBP14.34□□□□□ -0.11
CLN3-259ENST00000637551 IL18Q14116 193 aa14.34□□□□□ -0.11
CLN3-259ENST00000637551 LHFPL1Q86WI0 220 aa14.34□□□□□ -0.11
CLN3-259ENST00000637551 OR4A5Q8NH83 315 aa14.34□□□□□ -0.11
CLN3-259ENST00000637551 ARPC1AQ92747 370 aa14.34□□□□□ -0.11
CLN3-259ENST00000637551 NUBP2Q9Y5Y2 271 aa14.34□□□□□ -0.11
CLN3-259ENST00000637551 LINC01548A6NM66 108 aa14.33□□□□□ -0.12
CLN3-259ENST00000637551 HPRT1P00492 218 aa14.33□□□□□ -0.12
CLN3-259ENST00000637551 MAS1LP35410 378 aa14.33□□□□□ -0.12
CLN3-259ENST00000637551 ETV6P41212 452 aa14.33□□□□□ -0.12
CLN3-259ENST00000637551 CDX1P47902 265 aaPredicted RBP14.33□□□□□ -0.12
CLN3-259ENST00000637551 MMD2Q8IY49 270 aa14.33□□□□□ -0.12
CLN3-259ENST00000637551 RSRP1Q9BUV0 290 aa14.33□□□□□ -0.12
CLN3-259ENST00000637551 FXYD6Q9H0Q3 95 aa14.33□□□□□ -0.12
CLN3-259ENST00000637551 PARP11Q9NR21 331 aa14.33□□□□□ -0.12
CLN3-259ENST00000637551 FOXA2Q9Y261 457 aaPredicted RBP14.33□□□□□ -0.12
CLN3-259ENST00000637551 FABP12A6NFH5 140 aa14.32□□□□□ -0.12
CLN3-259ENST00000637551 SRRM4A7MD48 611 aaKnown RBP14.32□□□□□ -0.12
CLN3-259ENST00000637551 B3GALNT1O75752 331 aa14.32□□□□□ -0.12
CLN3-259ENST00000637551 TSPAN15O95858 294 aa14.32□□□□□ -0.12
CLN3-259ENST00000637551 CA2P00918 260 aa14.32□□□□□ -0.12
CLN3-259ENST00000637551 RND3P61587 244 aa14.32□□□□□ -0.12
CLN3-259ENST00000637551 DGCR2P98153 550 aa14.32□□□□□ -0.12
CLN3-259ENST00000637551 NDPQ00604 133 aa14.32□□□□□ -0.12
CLN3-259ENST00000637551 SURF2Q15527 256 aaPredicted RBP14.32□□□□□ -0.12
CLN3-259ENST00000637551 PRSS8Q16651 343 aa14.32□□□□□ -0.12
CLN3-259ENST00000637551 ZNF329Q86UD4 541 aa14.32□□□□□ -0.12
CLN3-259ENST00000637551 C11orf44Q8N8P7 122 aa14.32□□□□□ -0.12
CLN3-259ENST00000637551 RHOVQ96L33 236 aa14.32□□□□□ -0.12
CLN3-259ENST00000637551 SLA2Q9H6Q3 261 aa14.32□□□□□ -0.12
CLN3-259ENST00000637551 BET1LQ9NYM9 111 aa14.32□□□□□ -0.12
CLN3-259ENST00000637551 NOTCH3Q9UM47 2321 aa14.32□□□□□ -0.12
CLN3-259ENST00000637551 J3QRK9 145 aa14.31□□□□□ -0.12
CLN3-259ENST00000637551 CD3DP04234 171 aa14.31□□□□□ -0.12
CLN3-259ENST00000637551 FCER2P06734 321 aa14.31□□□□□ -0.12
CLN3-259ENST00000637551 SAA1P0DJI8 122 aaPredicted RBP14.31□□□□□ -0.12
CLN3-259ENST00000637551 F2RP25116 425 aa14.31□□□□□ -0.12
CLN3-259ENST00000637551 CD40LGP29965 261 aa14.31□□□□□ -0.12
CLN3-259ENST00000637551 BRWD1-AS2P59051 145 aa14.31□□□□□ -0.12
CLN3-259ENST00000637551 RUNX1Q01196 453 aa14.31□□□□□ -0.12
CLN3-259ENST00000637551 FXYD3Q14802 87 aa14.31□□□□□ -0.12
CLN3-259ENST00000637551 AADACL3Q5VUY0 350 aa14.31□□□□□ -0.12
CLN3-259ENST00000637551 STEAP1BQ6NZ63 245 aa14.31□□□□□ -0.12
CLN3-259ENST00000637551 LINC00299Q6ZSB3 139 aa14.31□□□□□ -0.12
CLN3-259ENST00000637551 SPAG16Q8N0X2 631 aa14.31□□□□□ -0.12
CLN3-259ENST00000637551 PUSL1Q8N0Z8 303 aaKnown RBP14.31□□□□□ -0.12
CLN3-259ENST00000637551 TERB2Q8NHR7 220 aa14.31□□□□□ -0.12
CLN3-259ENST00000637551 TMEM167AQ8TBQ9 72 aa14.31□□□□□ -0.12
CLN3-259ENST00000637551 UBE2E2Q96LR5 201 aa14.31□□□□□ -0.12
CLN3-259ENST00000637551 DCUN1D5Q9BTE7 237 aa14.31□□□□□ -0.12
CLN3-259ENST00000637551 SLC2A8Q9NY64 477 aa14.31□□□□□ -0.12
CLN3-259ENST00000637551 FCN1O00602 326 aa14.3□□□□□ -0.12
CLN3-259ENST00000637551 PGLYRP1O75594 196 aaPredicted RBP14.3□□□□□ -0.12
CLN3-259ENST00000637551 KBTBD11O94819 623 aa14.3□□□□□ -0.12
CLN3-259ENST00000637551 OR2A4O95047 310 aa14.3□□□□□ -0.12
CLN3-259ENST00000637551 RAB3DO95716 219 aa14.3□□□□□ -0.12
CLN3-259ENST00000637551 AKAIN1P0CW23 69 aa14.3□□□□□ -0.12
CLN3-259ENST00000637551 EGR2P11161 476 aaPredicted RBP14.3□□□□□ -0.12
CLN3-259ENST00000637551 NQO2P16083 231 aa14.3□□□□□ -0.12
CLN3-259ENST00000637551 AP3S2P59780 193 aa14.3□□□□□ -0.12
CLN3-259ENST00000637551 SSBP2P81877 361 aaPredicted RBP14.3□□□□□ -0.12
CLN3-259ENST00000637551 C10orf99Q6UWK7 81 aa14.3□□□□□ -0.12
CLN3-259ENST00000637551 CCDC190Q86UF4 302 aa14.3□□□□□ -0.12
CLN3-259ENST00000637551 ZNF695Q8IW36 515 aa14.3□□□□□ -0.12
CLN3-259ENST00000637551 R3HDM4Q96D70 268 aa14.3□□□□□ -0.12
CLN3-259ENST00000637551 OR2A7Q96R45 310 aa14.3□□□□□ -0.12
CLN3-259ENST00000637551 SPIN2AQ99865 258 aa14.3□□□□□ -0.12
CLN3-259ENST00000637551 SPIN2BQ9BPZ2 258 aa14.3□□□□□ -0.12
CLN3-259ENST00000637551 ANKRD20A5PA0PJZ0 165 aa14.29□□□□□ -0.12
CLN3-259ENST00000637551 ACTL6BO94805 426 aa14.29□□□□□ -0.12
CLN3-259ENST00000637551 CNIH1O95406 144 aa14.29□□□□□ -0.12
CLN3-259ENST00000637551 PF4V1P10720 104 aa14.29□□□□□ -0.12
CLN3-259ENST00000637551 RPA2P15927 270 aa14.29□□□□□ -0.12
CLN3-259ENST00000637551 MRGPRG-AS1Q2M3A8 158 aa14.29□□□□□ -0.12
CLN3-259ENST00000637551 NSUN5P1Q3KNT7 163 aa14.29□□□□□ -0.12
CLN3-259ENST00000637551 SPANXN2Q5MJ10 180 aa14.29□□□□□ -0.12
CLN3-259ENST00000637551 THOC7Q6I9Y2 204 aaKnown RBP14.29□□□□□ -0.12
CLN3-259ENST00000637551 TMEM65Q6PI78 240 aa14.29□□□□□ -0.12
CLN3-259ENST00000637551 WFDC9Q8NEX5 89 aa14.29□□□□□ -0.12
CLN3-259ENST00000637551 ZFAND1Q8TCF1 268 aa14.29□□□□□ -0.12
CLN3-259ENST00000637551 C4orf3Q8WVX3 66 aa14.29□□□□□ -0.12
CLN3-259ENST00000637551 PRRT1Q99946 306 aa14.29□□□□□ -0.12
CLN3-259ENST00000637551 TPSG1Q9NRR2 321 aa14.29□□□□□ -0.12
CLN3-259ENST00000637551 LINC00527Q9UJ94 153 aa14.29□□□□□ -0.12
CLN3-259ENST00000637551 DISC1C4P0D8 188 aa14.28□□□□□ -0.12
CLN3-259ENST00000637551 DUS4LO95620 317 aaKnown RBP14.28□□□□□ -0.12
CLN3-259ENST00000637551 HIST2H2BDQ6DRA6 164 aa14.28□□□□□ -0.12
CLN3-259ENST00000637551 SRSF8Q9BRL6 282 aaKnown RBP14.28□□□□□ -0.12
CLN3-259ENST00000637551 TINAGL1Q9GZM7 467 aaPredicted RBP14.28□□□□□ -0.12
CLN3-259ENST00000637551 ZNF430Q9H8G1 570 aaPredicted RBP14.28□□□□□ -0.12
CLN3-259ENST00000637551 SLC2A9Q9NRM0 540 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms