RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 C19orf54Q5BKX5 351 aa9.01□□□□□ -0.97
CLN3-257ENST00000637110 TEX45Q8NA69 505 aa9.01□□□□□ -0.97
CLN3-257ENST00000637110 DDB2Q92466 427 aa9.01□□□□□ -0.97
CLN3-257ENST00000637110 HSD17B10Q99714 261 aaKnown RBP9.01□□□□□ -0.97
CLN3-257ENST00000637110 FUNDC2Q9BWH2 189 aa9.01□□□□□ -0.97
CLN3-257ENST00000637110 SLA2Q9H6Q3 261 aa9.01□□□□□ -0.97
CLN3-257ENST00000637110 COA4Q9NYJ1 87 aa9.01□□□□□ -0.97
CLN3-257ENST00000637110 COMMD3Q9UBI1 195 aa9.01□□□□□ -0.97
CLN3-257ENST00000637110 SMIM31A0A1B0GVY4 71 aa9□□□□□ -0.97
CLN3-257ENST00000637110 MSGN1A6NI15 193 aa9□□□□□ -0.97
CLN3-257ENST00000637110 OVOL1O14753 267 aa9□□□□□ -0.97
CLN3-257ENST00000637110 TNFSF12O43508 249 aa9□□□□□ -0.97
CLN3-257ENST00000637110 XRCC3O43542 346 aa9□□□□□ -0.97
CLN3-257ENST00000637110 CREBL2O60519 120 aaPredicted RBP9□□□□□ -0.97
CLN3-257ENST00000637110 RAMP3O60896 148 aa9□□□□□ -0.97
CLN3-257ENST00000637110 LY86O95711 162 aa9□□□□□ -0.97
CLN3-257ENST00000637110 AADACP22760 399 aa9□□□□□ -0.97
CLN3-257ENST00000637110 SLURP1P55000 103 aa9□□□□□ -0.97
CLN3-257ENST00000637110 TAS2R20P59543 309 aa9□□□□□ -0.97
CLN3-257ENST00000637110 VBP1P61758 197 aa9□□□□□ -0.97
CLN3-257ENST00000637110 NCS1P62166 190 aa9□□□□□ -0.97
CLN3-257ENST00000637110 RPL30P62888 115 aaKnown RBP9□□□□□ -0.97
CLN3-257ENST00000637110 RUNX1Q01196 453 aa9□□□□□ -0.97
CLN3-257ENST00000637110 FHL3Q13643 280 aa9□□□□□ -0.97
CLN3-257ENST00000637110 MFSD4AQ8N468 514 aa9□□□□□ -0.97
CLN3-257ENST00000637110 POC5Q8NA72 575 aa9□□□□□ -0.97
CLN3-257ENST00000637110 OR13F1Q8NGS4 319 aa9□□□□□ -0.97
CLN3-257ENST00000637110 OR4S2Q8NH73 311 aa9□□□□□ -0.97
CLN3-257ENST00000637110 DCUN1D4Q92564 292 aa9□□□□□ -0.97
CLN3-257ENST00000637110 TMEM68Q96MH6 324 aa9□□□□□ -0.97
CLN3-257ENST00000637110 SLC5A7Q9GZV3 580 aa9□□□□□ -0.97
CLN3-257ENST00000637110 PALMDQ9NP74 551 aa9□□□□□ -0.97
CLN3-257ENST00000637110 CCL28Q9NRJ3 127 aa9□□□□□ -0.97
CLN3-257ENST00000637110 IGHV4OR15-8A0A075B7B6 117 aa8.99□□□□□ -0.97
CLN3-257ENST00000637110 A0A087WW49 117 aa8.99□□□□□ -0.97
CLN3-257ENST00000637110 A0A0G2JLM5 398 aa8.99□□□□□ -0.97
CLN3-257ENST00000637110 ANKRD34BA5PLL1 514 aa8.99□□□□□ -0.97
CLN3-257ENST00000637110 SAP30O75446 220 aa8.99□□□□□ -0.97
CLN3-257ENST00000637110 PPYP01298 95 aa8.99□□□□□ -0.97
CLN3-257ENST00000637110 HSPB1P04792 205 aaKnown RBP8.99□□□□□ -0.97
CLN3-257ENST00000637110 SAA1P0DJI8 122 aaPredicted RBP8.99□□□□□ -0.97
CLN3-257ENST00000637110 HERV-K104P61576 105 aa8.99□□□□□ -0.97
CLN3-257ENST00000637110 CDK10Q15131 360 aa8.99□□□□□ -0.97
CLN3-257ENST00000637110 PRSS8Q16651 343 aa8.99□□□□□ -0.97
CLN3-257ENST00000637110 ASPHD1Q5U4P2 390 aa8.99□□□□□ -0.97
CLN3-257ENST00000637110 ZNF66Q6ZN08 573 aa8.99□□□□□ -0.97
CLN3-257ENST00000637110 MMD2Q8IY49 270 aa8.99□□□□□ -0.97
CLN3-257ENST00000637110 OR5AP2Q8NGF4 316 aa8.99□□□□□ -0.97
CLN3-257ENST00000637110 SLC25A46Q96AG3 418 aa8.99□□□□□ -0.97
CLN3-257ENST00000637110 RHOVQ96L33 236 aa8.99□□□□□ -0.97
CLN3-257ENST00000637110 GPHA2Q96T91 129 aa8.99□□□□□ -0.97
CLN3-257ENST00000637110 EHFQ9NZC4 300 aa8.99□□□□□ -0.97
CLN3-257ENST00000637110 SACSQ9NZJ4 4579 aa8.98□□□□□ -0.97
CLN3-257ENST00000637110 H3BUA1 57 aa8.98□□□□□ -0.97
CLN3-257ENST00000637110 IGLV2-14P01704 120 aa8.98□□□□□ -0.97
CLN3-257ENST00000637110 PMP2P02689 132 aa8.98□□□□□ -0.97
CLN3-257ENST00000637110 LYL1P12980 280 aa8.98□□□□□ -0.97
CLN3-257ENST00000637110 PRSS3P35030 304 aa8.98□□□□□ -0.97
CLN3-257ENST00000637110 KIR2DS2P43631 304 aa8.98□□□□□ -0.97
CLN3-257ENST00000637110 CATR1Q13166 79 aa8.98□□□□□ -0.97
CLN3-257ENST00000637110 SSX9Q7RTT3 188 aa8.98□□□□□ -0.97
CLN3-257ENST00000637110 TMEM17Q86X19 198 aa8.98□□□□□ -0.97
CLN3-257ENST00000637110 VKORC1L1Q8N0U8 176 aa8.98□□□□□ -0.97
CLN3-257ENST00000637110 OR5H2Q8NGV7 314 aa8.98□□□□□ -0.97
CLN3-257ENST00000637110 SRSF12Q8WXF0 261 aaKnown RBP8.98□□□□□ -0.97
CLN3-257ENST00000637110 DLX4Q92988 240 aaPredicted RBP8.98□□□□□ -0.97
CLN3-257ENST00000637110 KCTD12Q96CX2 325 aaKnown RBP8.98□□□□□ -0.97
CLN3-257ENST00000637110 PRR25Q96S07 402 aa8.98□□□□□ -0.97
CLN3-257ENST00000637110 ZNF430Q9H8G1 570 aaPredicted RBP8.98□□□□□ -0.97
CLN3-257ENST00000637110 DPPA5A6NC42 116 aa8.97□□□□□ -0.97
CLN3-257ENST00000637110 FAM25AB3EWG3 89 aa8.97□□□□□ -0.97
CLN3-257ENST00000637110 FAM25CB3EWG5 89 aa8.97□□□□□ -0.97
CLN3-257ENST00000637110 FAM25GB3EWG6 89 aa8.97□□□□□ -0.97
CLN3-257ENST00000637110 OR2A4O95047 310 aa8.97□□□□□ -0.97
CLN3-257ENST00000637110 HRASP01112 189 aa8.97□□□□□ -0.97
CLN3-257ENST00000637110 EIF4EP06730 217 aaKnown RBP8.97□□□□□ -0.97
CLN3-257ENST00000637110 OR9G9P0C7N8 305 aa8.97□□□□□ -0.97
CLN3-257ENST00000637110 RORCP51449 518 aa8.97□□□□□ -0.97
CLN3-257ENST00000637110 SSBP2P81877 361 aaPredicted RBP8.97□□□□□ -0.97
CLN3-257ENST00000637110 DEFA5Q01523 94 aa8.97□□□□□ -0.97
CLN3-257ENST00000637110 OVCH2Q7RTZ1 564 aa8.97□□□□□ -0.97
CLN3-257ENST00000637110 ZNF429Q86V71 674 aa8.97□□□□□ -0.97
CLN3-257ENST00000637110 SPAG16Q8N0X2 631 aa8.97□□□□□ -0.97
CLN3-257ENST00000637110 ZBTB34Q8NCN2 500 aa8.97□□□□□ -0.97
CLN3-257ENST00000637110 VSTM2AQ8TAG5 236 aa8.97□□□□□ -0.97
CLN3-257ENST00000637110 SNAPC3Q92966 411 aa8.97□□□□□ -0.97
CLN3-257ENST00000637110 FYTTD1Q96QD9 318 aaKnown RBP8.97□□□□□ -0.97
CLN3-257ENST00000637110 OR2A7Q96R45 310 aa8.97□□□□□ -0.97
CLN3-257ENST00000637110 OR4C12Q96R67 309 aa8.97□□□□□ -0.97
CLN3-257ENST00000637110 SPIN2AQ99865 258 aa8.97□□□□□ -0.97
CLN3-257ENST00000637110 SPIN2BQ9BPZ2 258 aa8.97□□□□□ -0.97
CLN3-257ENST00000637110 ZNF2Q9BSG1 426 aaPredicted RBP8.97□□□□□ -0.97
CLN3-257ENST00000637110 RANGRFQ9HD47 186 aaPredicted RBP8.97□□□□□ -0.97
CLN3-257ENST00000637110 SCOCQ9UIL1 159 aa8.97□□□□□ -0.97
CLN3-257ENST00000637110 LYSTQ99698 3801 aa8.96□□□□□ -0.97
CLN3-257ENST00000637110 TRIM64CA6NLI5 447 aa8.96□□□□□ -0.98
CLN3-257ENST00000637110 SULT1C2O00338 296 aa8.96□□□□□ -0.98
CLN3-257ENST00000637110 ZP3P21754 424 aa8.96□□□□□ -0.98
CLN3-257ENST00000637110 RFX2P48378 723 aa8.96□□□□□ -0.98
CLN3-257ENST00000637110 INSL3P51460 131 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 76.3 ms