RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 OSR1Q8TAX0 266 aaPredicted RBP14.03□□□□□ -0.16
CLN3-247ENST00000636351 CHPT1Q8WUD6 406 aa14.03□□□□□ -0.16
CLN3-247ENST00000636351 BATF3Q9NR55 127 aa14.03□□□□□ -0.16
CLN3-247ENST00000636351 TPSG1Q9NRR2 321 aa14.03□□□□□ -0.16
CLN3-247ENST00000636351 MCUBQ9NWR8 336 aa14.03□□□□□ -0.16
CLN3-247ENST00000636351 LINC01548A6NM66 108 aa14.02□□□□□ -0.17
CLN3-247ENST00000636351 CA2P00918 260 aa14.02□□□□□ -0.17
CLN3-247ENST00000636351 VDAC1P21796 283 aa14.02□□□□□ -0.17
CLN3-247ENST00000636351 ETV6P41212 452 aa14.02□□□□□ -0.17
CLN3-247ENST00000636351 INPP1P49441 399 aa14.02□□□□□ -0.17
CLN3-247ENST00000636351 GNB1P62873 340 aa14.02□□□□□ -0.17
CLN3-247ENST00000636351 SLC35B1P78383 322 aa14.02□□□□□ -0.17
CLN3-247ENST00000636351 STPG2Q8N412 459 aa14.02□□□□□ -0.17
CLN3-247ENST00000636351 OR5AU1Q8NGC0 362 aa14.02□□□□□ -0.17
CLN3-247ENST00000636351 OR4X2Q8NGF9 303 aa14.02□□□□□ -0.17
CLN3-247ENST00000636351 R3HDM4Q96D70 268 aa14.02□□□□□ -0.17
CLN3-247ENST00000636351 IGHV7-81A0A0B4J1V7 117 aa14.01□□□□□ -0.17
CLN3-247ENST00000636351 PGLYRP1O75594 196 aaPredicted RBP14.01□□□□□ -0.17
CLN3-247ENST00000636351 IGLV2-23P01705 113 aa14.01□□□□□ -0.17
CLN3-247ENST00000636351 FAUP35544 74 aaKnown RBP14.01□□□□□ -0.17
CLN3-247ENST00000636351 UCP3P55916 312 aa14.01□□□□□ -0.17
CLN3-247ENST00000636351 KHDC1LQ5JSQ8 128 aa14.01□□□□□ -0.17
CLN3-247ENST00000636351 TRIQKQ629K1 86 aa14.01□□□□□ -0.17
CLN3-247ENST00000636351 IDO2Q6ZQW0 420 aa14.01□□□□□ -0.17
CLN3-247ENST00000636351 ZNF329Q86UD4 541 aa14.01□□□□□ -0.17
CLN3-247ENST00000636351 NDUFA11Q86Y39 141 aa14.01□□□□□ -0.17
CLN3-247ENST00000636351 TOMM5Q8N4H5 51 aa14.01□□□□□ -0.17
CLN3-247ENST00000636351 TRIM63Q969Q1 353 aa14.01□□□□□ -0.17
CLN3-247ENST00000636351 CITED2Q99967 270 aaPredicted RBP14.01□□□□□ -0.17
CLN3-247ENST00000636351 RSRP1Q9BUV0 290 aa14.01□□□□□ -0.17
CLN3-247ENST00000636351 SRRQ9GZT4 340 aa14.01□□□□□ -0.17
CLN3-247ENST00000636351 OR51J1Q9H342 316 aa14.01□□□□□ -0.17
CLN3-247ENST00000636351 AURKAIP1Q9NWT8 199 aaPredicted RBP14.01□□□□□ -0.17
CLN3-247ENST00000636351 SRRM4A7MD48 611 aaKnown RBP14□□□□□ -0.17
CLN3-247ENST00000636351 FCN1O00602 326 aa14□□□□□ -0.17
CLN3-247ENST00000636351 ATP6V0E1O15342 81 aa14□□□□□ -0.17
CLN3-247ENST00000636351 RAMP3O60896 148 aa14□□□□□ -0.17
CLN3-247ENST00000636351 SAA1P0DJI8 122 aaPredicted RBP14□□□□□ -0.17
CLN3-247ENST00000636351 PI3P19957 117 aa14□□□□□ -0.17
CLN3-247ENST00000636351 UBE2KP61086 200 aa14□□□□□ -0.17
CLN3-247ENST00000636351 NDPQ00604 133 aa14□□□□□ -0.17
CLN3-247ENST00000636351 ZNF57Q68EA5 555 aaPredicted RBP14□□□□□ -0.17
CLN3-247ENST00000636351 C10orf99Q6UWK7 81 aa14□□□□□ -0.17
CLN3-247ENST00000636351 PPP1R27Q86WC6 154 aa14□□□□□ -0.17
CLN3-247ENST00000636351 LHFPL1Q86WI0 220 aa14□□□□□ -0.17
CLN3-247ENST00000636351 VKORC1L1Q8N0U8 176 aa14□□□□□ -0.17
CLN3-247ENST00000636351 OR4F17Q8NGA8 305 aa14□□□□□ -0.17
CLN3-247ENST00000636351 TERB2Q8NHR7 220 aa14□□□□□ -0.17
CLN3-247ENST00000636351 GRPEL2Q8TAA5 225 aa14□□□□□ -0.17
CLN3-247ENST00000636351 OR4F4Q96R69 305 aa14□□□□□ -0.17
CLN3-247ENST00000636351 PRRT1Q99946 306 aa14□□□□□ -0.17
CLN3-247ENST00000636351 ADARB2-AS1A8MUL3 147 aa13.99□□□□□ -0.17
CLN3-247ENST00000636351 CNIH1O95406 144 aa13.99□□□□□ -0.17
CLN3-247ENST00000636351 HRASP01112 189 aa13.99□□□□□ -0.17
CLN3-247ENST00000636351 ZNF735P0CB33 412 aa13.99□□□□□ -0.17
CLN3-247ENST00000636351 CX3CL1P78423 397 aa13.99□□□□□ -0.17
CLN3-247ENST00000636351 ECSCRQ19T08 205 aa13.99□□□□□ -0.17
CLN3-247ENST00000636351 SSX9Q7RTT3 188 aa13.99□□□□□ -0.17
CLN3-247ENST00000636351 TBC1D26Q86UD7 250 aa13.99□□□□□ -0.17
CLN3-247ENST00000636351 OR51S1Q8NGJ8 323 aa13.99□□□□□ -0.17
CLN3-247ENST00000636351 ZFAND1Q8TCF1 268 aa13.99□□□□□ -0.17
CLN3-247ENST00000636351 MARCH1Q8TCQ1 289 aa13.99□□□□□ -0.17
CLN3-247ENST00000636351 CD300LFQ8TDQ1 290 aa13.99□□□□□ -0.17
CLN3-247ENST00000636351 WIPF2Q8TF74 440 aaPredicted RBP13.99□□□□□ -0.17
CLN3-247ENST00000636351 GON7Q9BXV9 100 aa13.99□□□□□ -0.17
CLN3-247ENST00000636351 SLC2A9Q9NRM0 540 aa13.99□□□□□ -0.17
CLN3-247ENST00000636351 WSB1Q9Y6I7 421 aa13.99□□□□□ -0.17
CLN3-247ENST00000636351 DNAH3Q8TD57 4116 aa13.99□□□□□ -0.17
CLN3-247ENST00000636351 NOTCH3Q9UM47 2321 aa13.98□□□□□ -0.17
CLN3-247ENST00000636351 RBFOX2O43251 390 aaKnown RBP eCLIP13.98□□□□□ -0.17
CLN3-247ENST00000636351 CREBL2O60519 120 aaPredicted RBP13.98□□□□□ -0.17
CLN3-247ENST00000636351 S1PR2O95136 353 aa13.98□□□□□ -0.17
CLN3-247ENST00000636351 ECI1P42126 302 aa13.98□□□□□ -0.17
CLN3-247ENST00000636351 PIGPP57054 158 aa13.98□□□□□ -0.17
CLN3-247ENST00000636351 BRWD1-AS2P59051 145 aa13.98□□□□□ -0.17
CLN3-247ENST00000636351 ERVK-16P61578 105 aa13.98□□□□□ -0.17
CLN3-247ENST00000636351 PJVKQ0ZLH3 352 aa13.98□□□□□ -0.17
CLN3-247ENST00000636351 KLF9Q13886 244 aaPredicted RBP13.98□□□□□ -0.17
CLN3-247ENST00000636351 GDPD1Q8N9F7 314 aa13.98□□□□□ -0.17
CLN3-247ENST00000636351 TEX45Q8NA69 505 aa13.98□□□□□ -0.17
CLN3-247ENST00000636351 OR13C8Q8NGS7 320 aa13.98□□□□□ -0.17
CLN3-247ENST00000636351 VSTM2AQ8TAG5 236 aa13.98□□□□□ -0.17
CLN3-247ENST00000636351 ARPC1AQ92747 370 aa13.98□□□□□ -0.17
CLN3-247ENST00000636351 ZNF486Q96H40 463 aaPredicted RBP13.98□□□□□ -0.17
CLN3-247ENST00000636351 PTTG2Q9NZH5 202 aa13.98□□□□□ -0.17
CLN3-247ENST00000636351 COPZ2Q9P299 210 aa13.98□□□□□ -0.17
CLN3-247ENST00000636351 SCP2D1Q9UJQ7 156 aa13.98□□□□□ -0.17
CLN3-247ENST00000636351 C14orf166Q9Y224 244 aaKnown RBP13.98□□□□□ -0.17
CLN3-247ENST00000636351 A0A1W2PRX2 142 aa13.97□□□□□ -0.17
CLN3-247ENST00000636351 TCRBV4S1A1TA0A5B7 111 aa13.97□□□□□ -0.17
CLN3-247ENST00000636351 ACTL6BO94805 426 aa13.97□□□□□ -0.17
CLN3-247ENST00000636351 IGF1P05019 195 aa13.97□□□□□ -0.17
CLN3-247ENST00000636351 CRYGBP07316 175 aa13.97□□□□□ -0.17
CLN3-247ENST00000636351 F2RP25116 425 aa13.97□□□□□ -0.17
CLN3-247ENST00000636351 FXYD3Q14802 87 aa13.97□□□□□ -0.17
CLN3-247ENST00000636351 TNXAQ16473 311 aa13.97□□□□□ -0.17
CLN3-247ENST00000636351 ZNF562Q6V9R5 426 aa13.97□□□□□ -0.17
CLN3-247ENST00000636351 CCDC71LQ8N9Z2 235 aa13.97□□□□□ -0.17
CLN3-247ENST00000636351 RHOVQ96L33 236 aa13.97□□□□□ -0.17
CLN3-247ENST00000636351 AIFM2Q9BRQ8 373 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms