RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 HRASP01112 189 aa16.22■□□□□ 0.19
CLN3-240ENST00000631023 S100GP29377 79 aa16.22■□□□□ 0.19
CLN3-240ENST00000631023 TNFSF8P32971 234 aa16.22■□□□□ 0.19
CLN3-240ENST00000631023 TAS2R19P59542 299 aa16.22■□□□□ 0.19
CLN3-240ENST00000631023 GNB1P62873 340 aa16.22■□□□□ 0.19
CLN3-240ENST00000631023 AKIRIN2Q53H80 203 aa16.22■□□□□ 0.19
CLN3-240ENST00000631023 SPAG16Q8N0X2 631 aa16.22■□□□□ 0.19
CLN3-240ENST00000631023 TMEM229BQ8NBD8 167 aa16.22■□□□□ 0.19
CLN3-240ENST00000631023 MINDY2Q8NBR6 621 aa16.22■□□□□ 0.19
CLN3-240ENST00000631023 CD300LFQ8TDQ1 290 aa16.22■□□□□ 0.19
CLN3-240ENST00000631023 SMIM4Q8WVI0 70 aa16.22■□□□□ 0.19
CLN3-240ENST00000631023 FBXO7Q9Y3I1 522 aa16.22■□□□□ 0.19
CLN3-240ENST00000631023 A3GALT2U3KPV4 340 aa16.22■□□□□ 0.19
CLN3-240ENST00000631023 FABP12A6NFH5 140 aa16.21■□□□□ 0.19
CLN3-240ENST00000631023 NUDT19A8MXV4 375 aa16.21■□□□□ 0.19
CLN3-240ENST00000631023 M0QYG6 137 aa16.21■□□□□ 0.19
CLN3-240ENST00000631023 RBFOX2O43251 390 aaKnown RBP eCLIP16.21■□□□□ 0.19
CLN3-240ENST00000631023 CD3DP04234 171 aa16.21■□□□□ 0.19
CLN3-240ENST00000631023 RPLP1P05386 114 aaKnown RBP16.21■□□□□ 0.19
CLN3-240ENST00000631023 EGR2P11161 476 aaPredicted RBP16.21■□□□□ 0.19
CLN3-240ENST00000631023 PSMB8P28062 276 aa16.21■□□□□ 0.19
CLN3-240ENST00000631023 DGCR2P98153 550 aa16.21■□□□□ 0.19
CLN3-240ENST00000631023 PJVKQ0ZLH3 352 aa16.21■□□□□ 0.19
CLN3-240ENST00000631023 AADACL3Q5VUY0 350 aa16.21■□□□□ 0.19
CLN3-240ENST00000631023 VSTM2AQ8TAG5 236 aa16.21■□□□□ 0.19
CLN3-240ENST00000631023 NDUFA13Q9P0J0 144 aa16.21■□□□□ 0.19
CLN3-240ENST00000631023 CMYA5Q8N3K9 4069 aa16.21■□□□□ 0.19
CLN3-240ENST00000631023 GPR31O00270 319 aa16.21■□□□□ 0.18
CLN3-240ENST00000631023 PF4P02776 101 aa16.21■□□□□ 0.18
CLN3-240ENST00000631023 SAA1P0DJI8 122 aaPredicted RBP16.21■□□□□ 0.18
CLN3-240ENST00000631023 S100A5P33763 92 aa16.21■□□□□ 0.18
CLN3-240ENST00000631023 UNQ5815/PRO19632Q6UWF5 114 aa16.21■□□□□ 0.18
CLN3-240ENST00000631023 ZNF695Q8IW36 515 aa16.21■□□□□ 0.18
CLN3-240ENST00000631023 ARRDC1Q8N5I2 433 aa16.21■□□□□ 0.18
CLN3-240ENST00000631023 KLHL30-AS1Q8NEE0 82 aa16.21■□□□□ 0.18
CLN3-240ENST00000631023 OR51H1Q8NH63 302 aa16.21■□□□□ 0.18
CLN3-240ENST00000631023 GRPEL2Q8TAA5 225 aa16.21■□□□□ 0.18
CLN3-240ENST00000631023 FAM103A1Q9BTL3 118 aaKnown RBP16.21■□□□□ 0.18
CLN3-240ENST00000631023 FXYD6Q9H0Q3 95 aa16.21■□□□□ 0.18
CLN3-240ENST00000631023 FOXA2Q9Y261 457 aaPredicted RBP16.21■□□□□ 0.18
CLN3-240ENST00000631023 A0A1W2PN81 502 aa16.2■□□□□ 0.18
CLN3-240ENST00000631023 ARPC1BO15143 372 aaKnown RBP16.2■□□□□ 0.18
CLN3-240ENST00000631023 PGLYRP1O75594 196 aaPredicted RBP16.2■□□□□ 0.18
CLN3-240ENST00000631023 ACTL6BO94805 426 aa16.2■□□□□ 0.18
CLN3-240ENST00000631023 IGLV1-40P01703 118 aa16.2■□□□□ 0.18
CLN3-240ENST00000631023 CD40LGP29965 261 aa16.2■□□□□ 0.18
CLN3-240ENST00000631023 CHRNA7P36544 502 aa16.2■□□□□ 0.18
CLN3-240ENST00000631023 UCP3P55916 312 aa16.2■□□□□ 0.18
CLN3-240ENST00000631023 BRWD1-AS2P59051 145 aa16.2■□□□□ 0.18
CLN3-240ENST00000631023 PRSS8Q16651 343 aa16.2■□□□□ 0.18
CLN3-240ENST00000631023 IDO2Q6ZQW0 420 aa16.2■□□□□ 0.18
CLN3-240ENST00000631023 LFNGQ8NES3 379 aa16.2■□□□□ 0.18
CLN3-240ENST00000631023 TINAGL1Q9GZM7 467 aaPredicted RBP16.2■□□□□ 0.18
CLN3-240ENST00000631023 RAMP3O60896 148 aa16.19■□□□□ 0.18
CLN3-240ENST00000631023 OR2A4O95047 310 aa16.19■□□□□ 0.18
CLN3-240ENST00000631023 CDX1P47902 265 aaPredicted RBP16.19■□□□□ 0.18
CLN3-240ENST00000631023 C19orf54Q5BKX5 351 aa16.19■□□□□ 0.18
CLN3-240ENST00000631023 STEAP1BQ6NZ63 245 aa16.19■□□□□ 0.18
CLN3-240ENST00000631023 LCNL1Q6ZST4 164 aa16.19■□□□□ 0.18
CLN3-240ENST00000631023 MMD2Q8IY49 270 aa16.19■□□□□ 0.18
CLN3-240ENST00000631023 SLC38A6Q8IZM9 456 aa16.19■□□□□ 0.18
CLN3-240ENST00000631023 OR5M8Q8NGP6 311 aa16.19■□□□□ 0.18
CLN3-240ENST00000631023 DGCR14Q96DF8 476 aaKnown RBP16.19■□□□□ 0.18
CLN3-240ENST00000631023 RHOVQ96L33 236 aa16.19■□□□□ 0.18
CLN3-240ENST00000631023 TMEM68Q96MH6 324 aa16.19■□□□□ 0.18
CLN3-240ENST00000631023 OR2A7Q96R45 310 aa16.19■□□□□ 0.18
CLN3-240ENST00000631023 RAB3DO95716 219 aa16.18■□□□□ 0.18
CLN3-240ENST00000631023 HPRT1P00492 218 aa16.18■□□□□ 0.18
CLN3-240ENST00000631023 CD74P04233 296 aa16.18■□□□□ 0.18
CLN3-240ENST00000631023 RLN1P04808 185 aa16.18■□□□□ 0.18
CLN3-240ENST00000631023 VKORC1L1Q8N0U8 176 aa16.18■□□□□ 0.18
CLN3-240ENST00000631023 RSRP1Q9BUV0 290 aa16.18■□□□□ 0.18
CLN3-240ENST00000631023 GSTZ1O43708 216 aaPredicted RBP16.17■□□□□ 0.18
CLN3-240ENST00000631023 RAB9AP51151 201 aa16.17■□□□□ 0.18
CLN3-240ENST00000631023 MEF2DQ14814 521 aa16.17■□□□□ 0.18
CLN3-240ENST00000631023 TNXAQ16473 311 aa16.17■□□□□ 0.18
CLN3-240ENST00000631023 SOSTQ9BQB4 213 aa16.17■□□□□ 0.18
CLN3-240ENST00000631023 KLK15Q9H2R5 256 aa16.17■□□□□ 0.18
CLN3-240ENST00000631023 PLEKHA2Q9HB19 425 aa16.17■□□□□ 0.18
CLN3-240ENST00000631023 NQO2P16083 231 aa16.17■□□□□ 0.18
CLN3-240ENST00000631023 F2RP25116 425 aa16.17■□□□□ 0.18
CLN3-240ENST00000631023 TAS2R31P59538 309 aa16.17■□□□□ 0.18
CLN3-240ENST00000631023 PHLDA2Q53GA4 152 aa16.17■□□□□ 0.18
CLN3-240ENST00000631023 C18orf65Q6ZTR6 163 aa16.17■□□□□ 0.18
CLN3-240ENST00000631023 C8orf86Q6ZUL3 223 aa16.17■□□□□ 0.18
CLN3-240ENST00000631023 UBE2E2Q96LR5 201 aa16.17■□□□□ 0.18
CLN3-240ENST00000631023 PHB2Q99623 299 aa16.17■□□□□ 0.18
CLN3-240ENST00000631023 ZNF430Q9H8G1 570 aaPredicted RBP16.17■□□□□ 0.18
CLN3-240ENST00000631023 NOTCH1P46531 2555 aa16.17■□□□□ 0.18
CLN3-240ENST00000631023 KBTBD11O94819 623 aa16.16■□□□□ 0.18
CLN3-240ENST00000631023 SSBP2P81877 361 aaPredicted RBP16.16■□□□□ 0.18
CLN3-240ENST00000631023 MRGPRG-AS1Q2M3A8 158 aa16.16■□□□□ 0.18
CLN3-240ENST00000631023 SSX9Q7RTT3 188 aa16.16■□□□□ 0.18
CLN3-240ENST00000631023 PUSL1Q8N0Z8 303 aaKnown RBP16.16■□□□□ 0.18
CLN3-240ENST00000631023 TERB2Q8NHR7 220 aa16.16■□□□□ 0.18
CLN3-240ENST00000631023 MYOZ3Q8TDC0 251 aa16.16■□□□□ 0.18
CLN3-240ENST00000631023 MSGN1A6NI15 193 aa16.15■□□□□ 0.18
CLN3-240ENST00000631023 SOX15O60248 233 aa16.15■□□□□ 0.18
CLN3-240ENST00000631023 AKAIN1P0CW23 69 aa16.15■□□□□ 0.18
CLN3-240ENST00000631023 PGAM2P15259 253 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms