RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 OR5AU1Q8NGC0 362 aa14.27□□□□□ -0.13
CLN3-239ENST00000628023 OR4X2Q8NGF9 303 aa14.27□□□□□ -0.13
CLN3-239ENST00000628023 TERB2Q8NHR7 220 aa14.27□□□□□ -0.13
CLN3-239ENST00000628023 CD300LFQ8TDQ1 290 aa14.27□□□□□ -0.13
CLN3-239ENST00000628023 TRIM63Q969Q1 353 aa14.27□□□□□ -0.13
CLN3-239ENST00000628023 OR51J1Q9H342 316 aa14.27□□□□□ -0.13
CLN3-239ENST00000628023 TPSG1Q9NRR2 321 aa14.27□□□□□ -0.13
CLN3-239ENST00000628023 IGHV7-81A0A0B4J1V7 117 aa14.26□□□□□ -0.13
CLN3-239ENST00000628023 SRRM4A7MD48 611 aaKnown RBP14.26□□□□□ -0.13
CLN3-239ENST00000628023 RAMP3O60896 148 aa14.26□□□□□ -0.13
CLN3-239ENST00000628023 ECI1P42126 302 aa14.26□□□□□ -0.13
CLN3-239ENST00000628023 UBE2KP61086 200 aa14.26□□□□□ -0.13
CLN3-239ENST00000628023 C2orf68Q2NKX9 166 aa14.26□□□□□ -0.13
CLN3-239ENST00000628023 ZNF57Q68EA5 555 aaPredicted RBP14.26□□□□□ -0.13
CLN3-239ENST00000628023 PPP1R27Q86WC6 154 aa14.26□□□□□ -0.13
CLN3-239ENST00000628023 GDPD1Q8N9F7 314 aa14.26□□□□□ -0.13
CLN3-239ENST00000628023 GON7Q9BXV9 100 aa14.26□□□□□ -0.13
CLN3-239ENST00000628023 PTTG2Q9NZH5 202 aa14.26□□□□□ -0.13
CLN3-239ENST00000628023 SCP2D1Q9UJQ7 156 aa14.26□□□□□ -0.13
CLN3-239ENST00000628023 FCN1O00602 326 aa14.25□□□□□ -0.13
CLN3-239ENST00000628023 ATP6V0E1O15342 81 aa14.25□□□□□ -0.13
CLN3-239ENST00000628023 RBFOX2O43251 390 aaKnown RBP eCLIP14.25□□□□□ -0.13
CLN3-239ENST00000628023 CREBL2O60519 120 aaPredicted RBP14.25□□□□□ -0.13
CLN3-239ENST00000628023 HRASP01112 189 aa14.25□□□□□ -0.13
CLN3-239ENST00000628023 ZNF735P0CB33 412 aa14.25□□□□□ -0.13
CLN3-239ENST00000628023 SAA1P0DJI8 122 aaPredicted RBP14.25□□□□□ -0.13
CLN3-239ENST00000628023 CD28P10747 220 aa14.25□□□□□ -0.13
CLN3-239ENST00000628023 PI3P19957 117 aa14.25□□□□□ -0.13
CLN3-239ENST00000628023 ZNF45Q02386 682 aa14.25□□□□□ -0.13
CLN3-239ENST00000628023 KLF9Q13886 244 aaPredicted RBP14.25□□□□□ -0.13
CLN3-239ENST00000628023 IDO2Q6ZQW0 420 aa14.25□□□□□ -0.13
CLN3-239ENST00000628023 ZNF329Q86UD4 541 aa14.25□□□□□ -0.13
CLN3-239ENST00000628023 TBC1D26Q86UD7 250 aa14.25□□□□□ -0.13
CLN3-239ENST00000628023 TEX45Q8NA69 505 aa14.25□□□□□ -0.13
CLN3-239ENST00000628023 OR51S1Q8NGJ8 323 aa14.25□□□□□ -0.13
CLN3-239ENST00000628023 ZFAND1Q8TCF1 268 aa14.25□□□□□ -0.13
CLN3-239ENST00000628023 MARCH1Q8TCQ1 289 aa14.25□□□□□ -0.13
CLN3-239ENST00000628023 ZNF486Q96H40 463 aaPredicted RBP14.25□□□□□ -0.13
CLN3-239ENST00000628023 SLC2A9Q9NRM0 540 aa14.25□□□□□ -0.13
CLN3-239ENST00000628023 C14orf166Q9Y224 244 aaKnown RBP14.25□□□□□ -0.13
CLN3-239ENST00000628023 CNIH1O95406 144 aa14.24□□□□□ -0.13
CLN3-239ENST00000628023 HPRT1P00492 218 aa14.24□□□□□ -0.13
CLN3-239ENST00000628023 PIGPP57054 158 aa14.24□□□□□ -0.13
CLN3-239ENST00000628023 CX3CL1P78423 397 aa14.24□□□□□ -0.13
CLN3-239ENST00000628023 ECSCRQ19T08 205 aa14.24□□□□□ -0.13
CLN3-239ENST00000628023 KHDC1LQ5JSQ8 128 aa14.24□□□□□ -0.13
CLN3-239ENST00000628023 SSX9Q7RTT3 188 aa14.24□□□□□ -0.13
CLN3-239ENST00000628023 VKORC1L1Q8N0U8 176 aa14.24□□□□□ -0.13
CLN3-239ENST00000628023 CCDC71LQ8N9Z2 235 aa14.24□□□□□ -0.13
CLN3-239ENST00000628023 OR13C8Q8NGS7 320 aa14.24□□□□□ -0.13
CLN3-239ENST00000628023 GRPEL2Q8TAA5 225 aa14.24□□□□□ -0.13
CLN3-239ENST00000628023 VSTM2AQ8TAG5 236 aa14.24□□□□□ -0.13
CLN3-239ENST00000628023 ARPC1AQ92747 370 aa14.24□□□□□ -0.13
CLN3-239ENST00000628023 AIFM2Q9BRQ8 373 aa14.24□□□□□ -0.13
CLN3-239ENST00000628023 COPZ2Q9P299 210 aa14.24□□□□□ -0.13
CLN3-239ENST00000628023 ACTL6BO94805 426 aa14.23□□□□□ -0.13
CLN3-239ENST00000628023 IGF1P05019 195 aa14.23□□□□□ -0.13
CLN3-239ENST00000628023 CRYGBP07316 175 aa14.23□□□□□ -0.13
CLN3-239ENST00000628023 F2RP25116 425 aa14.23□□□□□ -0.13
CLN3-239ENST00000628023 BRWD1-AS2P59051 145 aa14.23□□□□□ -0.13
CLN3-239ENST00000628023 ERVK-16P61578 105 aa14.23□□□□□ -0.13
CLN3-239ENST00000628023 NDPQ00604 133 aa14.23□□□□□ -0.13
CLN3-239ENST00000628023 FXYD3Q14802 87 aa14.23□□□□□ -0.13
CLN3-239ENST00000628023 HIST2H2BDQ6DRA6 164 aa14.23□□□□□ -0.13
CLN3-239ENST00000628023 C10orf99Q6UWK7 81 aa14.23□□□□□ -0.13
CLN3-239ENST00000628023 TCTEX1D1Q8N7M0 179 aa14.23□□□□□ -0.13
CLN3-239ENST00000628023 WIPF2Q8TF74 440 aaPredicted RBP14.23□□□□□ -0.13
CLN3-239ENST00000628023 HRASLSQ9HDD0 168 aa14.23□□□□□ -0.13
CLN3-239ENST00000628023 SLC2A8Q9NY64 477 aa14.23□□□□□ -0.13
CLN3-239ENST00000628023 COMMD9Q9P000 198 aa14.23□□□□□ -0.13
CLN3-239ENST00000628023 WSB1Q9Y6I7 421 aa14.23□□□□□ -0.13
CLN3-239ENST00000628023 S1PR2O95136 353 aa14.22□□□□□ -0.13
CLN3-239ENST00000628023 NQO2P16083 231 aa14.22□□□□□ -0.13
CLN3-239ENST00000628023 TAS2R31P59538 309 aa14.22□□□□□ -0.13
CLN3-239ENST00000628023 RND3P61587 244 aa14.22□□□□□ -0.13
CLN3-239ENST00000628023 PJVKQ0ZLH3 352 aa14.22□□□□□ -0.13
CLN3-239ENST00000628023 SURF2Q15527 256 aaPredicted RBP14.22□□□□□ -0.13
CLN3-239ENST00000628023 ZNF562Q6V9R5 426 aa14.22□□□□□ -0.13
CLN3-239ENST00000628023 DMBX1Q8NFW5 382 aa14.22□□□□□ -0.13
CLN3-239ENST00000628023 FAM110DQ8TAY7 271 aaPredicted RBP14.22□□□□□ -0.13
CLN3-239ENST00000628023 RHOVQ96L33 236 aa14.22□□□□□ -0.13
CLN3-239ENST00000628023 CITED2Q99967 270 aaPredicted RBP14.22□□□□□ -0.13
CLN3-239ENST00000628023 PLEKHA2Q9HB19 425 aa14.22□□□□□ -0.13
CLN3-239ENST00000628023 TRAV41A0A0B4J266 112 aa14.21□□□□□ -0.13
CLN3-239ENST00000628023 TCRBV4S1A1TA0A5B7 111 aa14.21□□□□□ -0.13
CLN3-239ENST00000628023 G3V318 75 aa14.21□□□□□ -0.13
CLN3-239ENST00000628023 MPPED1O15442 326 aa14.21□□□□□ -0.13
CLN3-239ENST00000628023 KBTBD11O94819 623 aa14.21□□□□□ -0.13
CLN3-239ENST00000628023 OR2A4O95047 310 aa14.21□□□□□ -0.13
CLN3-239ENST00000628023 OPN1MWP04001 364 aa14.21□□□□□ -0.13
CLN3-239ENST00000628023 CTSDP07339 412 aaPredicted RBP14.21□□□□□ -0.13
CLN3-239ENST00000628023 OPN1MW2P0DN77 364 aa14.21□□□□□ -0.13
CLN3-239ENST00000628023 OPN1MW3P0DN78 364 aa14.21□□□□□ -0.13
CLN3-239ENST00000628023 LPAR6P43657 344 aa14.21□□□□□ -0.13
CLN3-239ENST00000628023 TMEM267Q0VDI3 215 aaPredicted RBP14.21□□□□□ -0.13
CLN3-239ENST00000628023 TNXAQ16473 311 aa14.21□□□□□ -0.13
CLN3-239ENST00000628023 BAK1Q16611 211 aa14.21□□□□□ -0.13
CLN3-239ENST00000628023 PRSS8Q16651 343 aa14.21□□□□□ -0.13
CLN3-239ENST00000628023 TEX38Q6PEX7 206 aa14.21□□□□□ -0.13
CLN3-239ENST00000628023 LINC00299Q6ZSB3 139 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms