RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 RORBQ92753 470 aa0.09□□□□□ -2.4
SCN1A-208ENST00000625916 TESCQ96BS2 214 aa0.09□□□□□ -2.4
SCN1A-208ENST00000625916 CCDC124Q96CT7 223 aaKnown RBP0.09□□□□□ -2.4
SCN1A-208ENST00000625916 HDGFL3Q9Y3E1 203 aa0.09□□□□□ -2.4
SCN1A-208ENST00000625916 GMEB1Q9Y692 573 aa0.09□□□□□ -2.4
SCN1A-208ENST00000625916 SMARCA4P51532 1647 aa0.09□□□□□ -2.4
SCN1A-208ENST00000625916 ARFGEF3Q5TH69 2177 aa0.08□□□□□ -2.4
SCN1A-208ENST00000625916 A0A087WX48 190 aa0.08□□□□□ -2.4
SCN1A-208ENST00000625916 TRAV14DV4A0A0A6YYC5 116 aa0.08□□□□□ -2.4
SCN1A-208ENST00000625916 TMEM212A6NML5 194 aa0.08□□□□□ -2.4
SCN1A-208ENST00000625916 IBA57-AS1B1ANH7 110 aa0.08□□□□□ -2.4
SCN1A-208ENST00000625916 SYNGR1O43759 233 aa0.08□□□□□ -2.4
SCN1A-208ENST00000625916 FADS2O95864 444 aaKnown RBP0.08□□□□□ -2.4
SCN1A-208ENST00000625916 HLA-DQB2P05538 268 aa0.08□□□□□ -2.4
SCN1A-208ENST00000625916 PVALBP20472 110 aaPredicted RBP0.08□□□□□ -2.4
SCN1A-208ENST00000625916 H2BFSP57053 126 aa0.08□□□□□ -2.4
SCN1A-208ENST00000625916 NDUFA5Q16718 116 aa0.08□□□□□ -2.4
SCN1A-208ENST00000625916 CLEC12BQ2HXU8 276 aa0.08□□□□□ -2.4
SCN1A-208ENST00000625916 ACSM3Q53FZ2 586 aa0.08□□□□□ -2.4
SCN1A-208ENST00000625916 SPATA24Q86W54 205 aa0.08□□□□□ -2.4
SCN1A-208ENST00000625916 SBSPONQ8IVN8 264 aa0.08□□□□□ -2.4
SCN1A-208ENST00000625916 OR8B3Q8NGG8 313 aa0.08□□□□□ -2.4
SCN1A-208ENST00000625916 OR4C6Q8NH72 309 aa0.08□□□□□ -2.4
SCN1A-208ENST00000625916 PARVAQ9NVD7 372 aa0.08□□□□□ -2.4
SCN1A-208ENST00000625916 ZNHIT6Q9NWK9 470 aaKnown RBP0.08□□□□□ -2.4
SCN1A-208ENST00000625916 OR5AC2Q9NZP5 309 aa0.08□□□□□ -2.4
SCN1A-208ENST00000625916 CD300AQ9UGN4 299 aa0.08□□□□□ -2.4
SCN1A-208ENST00000625916 LHFPL6Q9Y693 200 aa0.08□□□□□ -2.4
SCN1A-208ENST00000625916 KMT2CQ8NEZ4 4911 aaKnown RBP0.08□□□□□ -2.4
SCN1A-208ENST00000625916 SYNRGQ9UMZ2 1314 aa0.08□□□□□ -2.4
SCN1A-208ENST00000625916 THSD7AQ9UPZ6 1657 aa0.08□□□□□ -2.4
SCN1A-208ENST00000625916 CPAMD8Q8IZJ3 1885 aa0.07□□□□□ -2.4
SCN1A-208ENST00000625916 DAPL1A0PJW8 107 aa0.07□□□□□ -2.4
SCN1A-208ENST00000625916 C9JCJ5 164 aa0.07□□□□□ -2.4
SCN1A-208ENST00000625916 ATP5G1P05496 136 aa0.07□□□□□ -2.4
SCN1A-208ENST00000625916 TFPTP0C1Z6 253 aa0.07□□□□□ -2.4
SCN1A-208ENST00000625916 CCDC172P0C7W6 258 aa0.07□□□□□ -2.4
SCN1A-208ENST00000625916 LINC00614P0C842 121 aa0.07□□□□□ -2.4
SCN1A-208ENST00000625916 SLC35E2BP0CK96 405 aa0.07□□□□□ -2.4
SCN1A-208ENST00000625916 RNASE3P12724 160 aaKnown RBP0.07□□□□□ -2.4
SCN1A-208ENST00000625916 CCL2P13500 99 aa0.07□□□□□ -2.4
SCN1A-208ENST00000625916 F8A1P23610 371 aa0.07□□□□□ -2.4
SCN1A-208ENST00000625916 MSNP26038 577 aaKnown RBP0.07□□□□□ -2.4
SCN1A-208ENST00000625916 SLCO1A2P46721 670 aa0.07□□□□□ -2.4
SCN1A-208ENST00000625916 HAAOP46952 286 aa0.07□□□□□ -2.4
SCN1A-208ENST00000625916 CARD18P57730 90 aa0.07□□□□□ -2.4
SCN1A-208ENST00000625916 FKBP1AP62942 108 aaKnown RBP0.07□□□□□ -2.4
SCN1A-208ENST00000625916 STX3Q13277 289 aa0.07□□□□□ -2.4
SCN1A-208ENST00000625916 GNA13Q14344 377 aa0.07□□□□□ -2.4
SCN1A-208ENST00000625916 FAM27BQ5VT28 67 aa0.07□□□□□ -2.4
SCN1A-208ENST00000625916 RASSF6Q6ZTQ3 369 aa0.07□□□□□ -2.4
SCN1A-208ENST00000625916 DYNC2LI1Q8TCX1 351 aa0.07□□□□□ -2.4
SCN1A-208ENST00000625916 RAB2BQ8WUD1 216 aa0.07□□□□□ -2.4
SCN1A-208ENST00000625916 ACOT12Q8WYK0 555 aa0.07□□□□□ -2.4
SCN1A-208ENST00000625916 AQP3Q92482 292 aa0.07□□□□□ -2.4
SCN1A-208ENST00000625916 MSANTD3Q96H12 275 aa0.07□□□□□ -2.4
SCN1A-208ENST00000625916 OBSCN-AS1Q96MR7 158 aa0.07□□□□□ -2.4
SCN1A-208ENST00000625916 SERPINB11Q96P15 392 aa0.07□□□□□ -2.4
SCN1A-208ENST00000625916 YIPF3Q9GZM5 350 aa0.07□□□□□ -2.4
SCN1A-208ENST00000625916 METTL9Q9H1A3 318 aa0.07□□□□□ -2.4
SCN1A-208ENST00000625916 ASCL3Q9NQ33 180 aa0.07□□□□□ -2.4
SCN1A-208ENST00000625916 PCYT1BQ9Y5K3 369 aaPredicted RBP0.07□□□□□ -2.4
SCN1A-208ENST00000625916 CHD2O14647 1828 aaKnown RBP0.07□□□□□ -2.4
SCN1A-208ENST00000625916 LAMA4Q16363 1823 aa0.07□□□□□ -2.4
SCN1A-208ENST00000625916 NUP153P49790 1475 aaKnown RBP0.07□□□□□ -2.4
SCN1A-208ENST00000625916 HEATR5BQ9P2D3 2071 aa0.07□□□□□ -2.4
SCN1A-208ENST00000625916 MAP3K19Q56UN5 1328 aa0.07□□□□□ -2.4
SCN1A-208ENST00000625916 BRWD1Q9NSI6 2320 aa0.07□□□□□ -2.4
SCN1A-208ENST00000625916 TONSLQ96HA7 1378 aa0.06□□□□□ -2.4
SCN1A-208ENST00000625916 ABCC12Q96J65 1359 aa0.06□□□□□ -2.4
SCN1A-208ENST00000625916 NCOA6Q14686 2063 aaPredicted RBP0.06□□□□□ -2.4
SCN1A-208ENST00000625916 TMEM269A0A1B0GVZ9 245 aa0.06□□□□□ -2.4
SCN1A-208ENST00000625916 C21orf140B9A014 251 aa0.06□□□□□ -2.4
SCN1A-208ENST00000625916 TRAPPC2LH3BP13 241 aa0.06□□□□□ -2.4
SCN1A-208ENST00000625916 NDUFS8O00217 210 aa0.06□□□□□ -2.4
SCN1A-208ENST00000625916 PMP2P02689 132 aa0.06□□□□□ -2.4
SCN1A-208ENST00000625916 MSMBP08118 114 aa0.06□□□□□ -2.4
SCN1A-208ENST00000625916 HPCAP84074 193 aa0.06□□□□□ -2.4
SCN1A-208ENST00000625916 FABP5Q01469 135 aa0.06□□□□□ -2.4
SCN1A-208ENST00000625916 SMAGPQ0VAQ4 97 aa0.06□□□□□ -2.4
SCN1A-208ENST00000625916 RBM48Q5RL73 367 aaKnown RBP0.06□□□□□ -2.4
SCN1A-208ENST00000625916 DHFR2Q86XF0 187 aa0.06□□□□□ -2.4
SCN1A-208ENST00000625916 GPHB5Q86YW7 130 aa0.06□□□□□ -2.4
SCN1A-208ENST00000625916 C1orf158Q8N1D5 194 aa0.06□□□□□ -2.4
SCN1A-208ENST00000625916 ATP6V1C2Q8NEY4 427 aa0.06□□□□□ -2.4
SCN1A-208ENST00000625916 OR52E4Q8NGH9 312 aa0.06□□□□□ -2.4
SCN1A-208ENST00000625916 STOML3Q8TAV4 291 aa0.06□□□□□ -2.4
SCN1A-208ENST00000625916 RNASEH2CQ8TDP1 164 aaKnown RBP0.06□□□□□ -2.4
SCN1A-208ENST00000625916 ASB13Q8WXK3 278 aa0.06□□□□□ -2.4
SCN1A-208ENST00000625916 LINC00526Q96FQ7 95 aa0.06□□□□□ -2.4
SCN1A-208ENST00000625916 CYTH2Q99418 400 aa0.06□□□□□ -2.4
SCN1A-208ENST00000625916 MED10Q9BTT4 135 aa0.06□□□□□ -2.4
SCN1A-208ENST00000625916 TMEM109Q9BVC6 243 aa0.06□□□□□ -2.4
SCN1A-208ENST00000625916 MROQ9BYG7 248 aa0.06□□□□□ -2.4
SCN1A-208ENST00000625916 XAGE1AQ9HD64 81 aa0.06□□□□□ -2.4
SCN1A-208ENST00000625916 MAST4O15021 2626 aa0.06□□□□□ -2.4
SCN1A-208ENST00000625916 USP24Q9UPU5 2620 aa0.05□□□□□ -2.4
SCN1A-208ENST00000625916 TRBV10-2A0A0K0K1G8 114 aa0.05□□□□□ -2.4
SCN1A-208ENST00000625916 A0A1B0GW54 56 aa0.05□□□□□ -2.4
SCN1A-208ENST00000625916 METTL15A6NJ78 407 aa0.05□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms