RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 RANP62826 216 aaKnown RBP10.61□□□□□ -0.71
LIG1-221ENST00000613670 RPEL1Q2QD12 228 aa10.61□□□□□ -0.71
LIG1-221ENST00000613670 HLA-DRB5Q30154 266 aa10.61□□□□□ -0.71
LIG1-221ENST00000613670 HES3Q5TGS1 186 aa10.61□□□□□ -0.71
LIG1-221ENST00000613670 HAPLN4Q86UW8 402 aa10.61□□□□□ -0.71
LIG1-221ENST00000613670 DMRTC2Q8IXT2 367 aaPredicted RBP10.61□□□□□ -0.71
LIG1-221ENST00000613670 GOLT1BQ9Y3E0 138 aa10.61□□□□□ -0.71
LIG1-221ENST00000613670 PTPRSQ13332 1948 aa10.61□□□□□ -0.71
LIG1-221ENST00000613670 SPRY3O43610 288 aa10.61□□□□□ -0.71
LIG1-221ENST00000613670 PFN1P07737 140 aaKnown RBP10.61□□□□□ -0.71
LIG1-221ENST00000613670 OR10J4P0C629 311 aa10.61□□□□□ -0.71
LIG1-221ENST00000613670 SPCS3P61009 180 aa10.61□□□□□ -0.71
LIG1-221ENST00000613670 ZNF585BQ52M93 769 aa10.61□□□□□ -0.71
LIG1-221ENST00000613670 FAM216AQ8WUB2 273 aa10.61□□□□□ -0.71
LIG1-221ENST00000613670 FER1L6-AS2Q96M78 137 aa10.61□□□□□ -0.71
LIG1-221ENST00000613670 NEURL1O76050 574 aa10.6□□□□□ -0.71
LIG1-221ENST00000613670 CLDN14O95500 239 aa10.6□□□□□ -0.71
LIG1-221ENST00000613670 HPRT1P00492 218 aa10.6□□□□□ -0.71
LIG1-221ENST00000613670 CAMPP49913 170 aa10.6□□□□□ -0.71
LIG1-221ENST00000613670 Q6ZN92 141 aa10.6□□□□□ -0.71
LIG1-221ENST00000613670 CXorf1O96002 111 aa10.6□□□□□ -0.71
LIG1-221ENST00000613670 OR5G3P0C626 314 aa10.6□□□□□ -0.71
LIG1-221ENST00000613670 RPL31P62899 125 aaKnown RBP10.6□□□□□ -0.71
LIG1-221ENST00000613670 PMS2CLQ68D20 193 aa10.6□□□□□ -0.71
LIG1-221ENST00000613670 ZBTB34Q8NCN2 500 aa10.6□□□□□ -0.71
LIG1-221ENST00000613670 SPSB4Q96A44 273 aa10.6□□□□□ -0.71
LIG1-221ENST00000613670 STARD4Q96DR4 205 aa10.6□□□□□ -0.71
LIG1-221ENST00000613670 A6NNC1 897 aa10.6□□□□□ -0.71
LIG1-221ENST00000613670 SH2D2AQ9NP31 389 aa10.6□□□□□ -0.71
LIG1-221ENST00000613670 A8MWP6 167 aa10.59□□□□□ -0.71
LIG1-221ENST00000613670 DIRC3C9JPN6 131 aa10.59□□□□□ -0.71
LIG1-221ENST00000613670 DCAF10Q5QP82 559 aa10.59□□□□□ -0.71
LIG1-221ENST00000613670 ATOH7Q8N100 152 aa10.59□□□□□ -0.71
LIG1-221ENST00000613670 TMEM178AQ8NBL3 297 aa10.59□□□□□ -0.71
LIG1-221ENST00000613670 WDYHV1Q96HA8 205 aa10.59□□□□□ -0.71
LIG1-221ENST00000613670 IER2Q9BTL4 223 aa10.59□□□□□ -0.71
LIG1-221ENST00000613670 ZNF503-AS2A6NEH8 195 aa10.59□□□□□ -0.71
LIG1-221ENST00000613670 HELTA6NFD8 242 aa10.59□□□□□ -0.71
LIG1-221ENST00000613670 PRSS8Q16651 343 aa10.59□□□□□ -0.71
LIG1-221ENST00000613670 RNF151Q2KHN1 245 aa10.59□□□□□ -0.71
LIG1-221ENST00000613670 DHRS13Q6UX07 377 aa10.59□□□□□ -0.71
LIG1-221ENST00000613670 NHLRC2Q8NBF2 726 aa10.59□□□□□ -0.71
LIG1-221ENST00000613670 TIMM9Q9Y5J7 89 aa10.59□□□□□ -0.71
LIG1-221ENST00000613670 GTF3C1Q12789 2109 aa10.59□□□□□ -0.71
LIG1-221ENST00000613670 RAB29O14966 203 aa10.59□□□□□ -0.71
LIG1-221ENST00000613670 PSPNO60542 156 aa10.59□□□□□ -0.71
LIG1-221ENST00000613670 VENTXO95231 258 aa10.59□□□□□ -0.71
LIG1-221ENST00000613670 CYC1P08574 325 aa10.59□□□□□ -0.71
LIG1-221ENST00000613670 COX5BP10606 129 aa10.59□□□□□ -0.71
LIG1-221ENST00000613670 NPY1RP25929 384 aa10.59□□□□□ -0.71
LIG1-221ENST00000613670 Q0VFX4 171 aa10.59□□□□□ -0.71
LIG1-221ENST00000613670 RBMXL3Q8N7X1 1067 aaKnown RBP10.59□□□□□ -0.71
LIG1-221ENST00000613670 GALR2O43603 387 aaPredicted RBP10.58□□□□□ -0.72
LIG1-221ENST00000613670 TCF21O43680 179 aa10.58□□□□□ -0.72
LIG1-221ENST00000613670 TNFSF15O95150 251 aa10.58□□□□□ -0.72
LIG1-221ENST00000613670 ADMP35318 185 aa10.58□□□□□ -0.72
LIG1-221ENST00000613670 TIPARPQ7Z3E1 657 aaKnown RBP10.58□□□□□ -0.72
LIG1-221ENST00000613670 DOLPP1Q86YN1 238 aa10.58□□□□□ -0.72
LIG1-221ENST00000613670 FGF23Q9GZV9 251 aaPredicted RBP10.58□□□□□ -0.72
LIG1-221ENST00000613670 ARRDC1-AS1Q9H2J1 176 aa10.58□□□□□ -0.72
LIG1-221ENST00000613670 ZNF703Q9H7S9 590 aaPredicted RBP10.58□□□□□ -0.72
LIG1-221ENST00000613670 PILRBQ9UKJ0 227 aa10.58□□□□□ -0.72
LIG1-221ENST00000613670 NUP210LQ5VU65 1888 aa10.58□□□□□ -0.72
LIG1-221ENST00000613670 TMEM131Q92545 1883 aa10.58□□□□□ -0.72
LIG1-221ENST00000613670 CACNA1HO95180 2353 aa10.58□□□□□ -0.72
LIG1-221ENST00000613670 CRYBB3P26998 211 aa10.58□□□□□ -0.72
LIG1-221ENST00000613670 GNB1P62873 340 aa10.58□□□□□ -0.72
LIG1-221ENST00000613670 RPL39P5Q59GN2 51 aa10.58□□□□□ -0.72
LIG1-221ENST00000613670 TEPPQ6URK8 271 aa10.58□□□□□ -0.72
LIG1-221ENST00000613670 OR13A1Q8NGR1 328 aa10.58□□□□□ -0.72
LIG1-221ENST00000613670 CXXC4Q9H2H0 198 aa10.58□□□□□ -0.72
LIG1-221ENST00000613670 B4E171 279 aa10.58□□□□□ -0.72
LIG1-221ENST00000613670 SERF1AO75920 110 aa10.58□□□□□ -0.72
LIG1-221ENST00000613670 TSPAN7P41732 249 aa10.58□□□□□ -0.72
LIG1-221ENST00000613670 RNASEKQ6P5S7 137 aaKnown RBP10.58□□□□□ -0.72
LIG1-221ENST00000613670 TMEM14EPQ6UXP3 125 aa10.58□□□□□ -0.72
LIG1-221ENST00000613670 ZNF497Q6ZNH5 498 aa10.58□□□□□ -0.72
LIG1-221ENST00000613670 PQLC2Q6ZP29 291 aa10.58□□□□□ -0.72
LIG1-221ENST00000613670 OR5B3Q8NH48 314 aa10.58□□□□□ -0.72
LIG1-221ENST00000613670 TMEM45BQ96B21 275 aa10.58□□□□□ -0.72
LIG1-221ENST00000613670 TMEM68Q96MH6 324 aa10.58□□□□□ -0.72
LIG1-221ENST00000613670 LINC00470Q9BZP3 86 aa10.58□□□□□ -0.72
LIG1-221ENST00000613670 CHD3Q12873 2000 aaKnown RBP10.58□□□□□ -0.72
LIG1-221ENST00000613670 WNK2Q9Y3S1 2297 aa10.58□□□□□ -0.72
LIG1-221ENST00000613670 LHX2P50458 406 aa10.57□□□□□ -0.72
LIG1-221ENST00000613670 LCN2P80188 198 aa10.57□□□□□ -0.72
LIG1-221ENST00000613670 ZNF766Q5HY98 468 aa10.57□□□□□ -0.72
LIG1-221ENST00000613670 TEX38Q6PEX7 206 aa10.57□□□□□ -0.72
LIG1-221ENST00000613670 LINC01551Q86U37 167 aa10.57□□□□□ -0.72
LIG1-221ENST00000613670 KLF14Q8TD94 323 aaPredicted RBP10.57□□□□□ -0.72
LIG1-221ENST00000613670 NPVFQ9HCQ7 196 aa10.57□□□□□ -0.72
LIG1-221ENST00000613670 ENSAO43768 121 aaKnown RBP10.57□□□□□ -0.72
LIG1-221ENST00000613670 TOX4O94842 621 aa10.57□□□□□ -0.72
LIG1-221ENST00000613670 MAS1LP35410 378 aa10.57□□□□□ -0.72
LIG1-221ENST00000613670 ZNF83P51522 516 aa10.57□□□□□ -0.72
LIG1-221ENST00000613670 TAS2R45P59539 299 aa10.57□□□□□ -0.72
LIG1-221ENST00000613670 PSG7Q13046 419 aa10.57□□□□□ -0.72
LIG1-221ENST00000613670 OCC1Q8TAD7 63 aa10.57□□□□□ -0.72
LIG1-221ENST00000613670 MS4A5Q9H3V2 200 aa10.57□□□□□ -0.72
LIG1-221ENST00000613670 HSPB7Q9UBY9 170 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms