RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 H2BFWTQ7Z2G1 175 aa11.52□□□□□ -0.57
USP39-220ENST00000613444 AJUBAQ96IF1 538 aa11.52□□□□□ -0.57
USP39-220ENST00000613444 LSM5Q9Y4Y9 91 aaKnown RBP11.52□□□□□ -0.57
USP39-220ENST00000613444 CCDC168Q8NDH2 2452 aa11.52□□□□□ -0.57
USP39-220ENST00000613444 LEUTXA8MZ59 168 aa11.51□□□□□ -0.57
USP39-220ENST00000613444 B4DSR2 109 aa11.51□□□□□ -0.57
USP39-220ENST00000613444 APOA2P02652 100 aa11.51□□□□□ -0.57
USP39-220ENST00000613444 PET100P0DJ07 73 aa11.51□□□□□ -0.57
USP39-220ENST00000613444 UBE2E1P51965 193 aa11.51□□□□□ -0.57
USP39-220ENST00000613444 POLR2GP62487 172 aaKnown RBP eCLIP11.51□□□□□ -0.57
USP39-220ENST00000613444 AARDQ4LEZ3 155 aa11.51□□□□□ -0.57
USP39-220ENST00000613444 PDPNQ86YL7 162 aa11.51□□□□□ -0.57
USP39-220ENST00000613444 RPEQ96AT9 228 aa11.51□□□□□ -0.57
USP39-220ENST00000613444 RHOVQ96L33 236 aa11.51□□□□□ -0.57
USP39-220ENST00000613444 CREBBPQ92793 2442 aa11.51□□□□□ -0.57
USP39-220ENST00000613444 ITPR3Q14573 2671 aa11.51□□□□□ -0.57
USP39-220ENST00000613444 A0A1W2PRD5 423 aa11.51□□□□□ -0.57
USP39-220ENST00000613444 A0A1W2PRF3 423 aa11.51□□□□□ -0.57
USP39-220ENST00000613444 A0A1W2PRM7 423 aa11.51□□□□□ -0.57
USP39-220ENST00000613444 FAM90A9PA6NNJ1 464 aa11.51□□□□□ -0.57
USP39-220ENST00000613444 RNF223E7ERA6 249 aa11.51□□□□□ -0.57
USP39-220ENST00000613444 TXNL1O43396 289 aa11.51□□□□□ -0.57
USP39-220ENST00000613444 NXPH3O95157 252 aa11.51□□□□□ -0.57
USP39-220ENST00000613444 SSX9Q7RTT3 188 aa11.51□□□□□ -0.57
USP39-220ENST00000613444 OSR1Q8TAX0 266 aaPredicted RBP11.51□□□□□ -0.57
USP39-220ENST00000613444 C17orf50Q8WW18 174 aa11.51□□□□□ -0.57
USP39-220ENST00000613444 DCUN1D4Q92564 292 aa11.51□□□□□ -0.57
USP39-220ENST00000613444 LHX4Q969G2 390 aa11.51□□□□□ -0.57
USP39-220ENST00000613444 REG4Q9BYZ8 158 aa11.51□□□□□ -0.57
USP39-220ENST00000613444 MFFQ9GZY8 342 aa11.51□□□□□ -0.57
USP39-220ENST00000613444 MAGT1Q9H0U3 335 aa11.51□□□□□ -0.57
USP39-220ENST00000613444 ZFP57Q9NU63 452 aa11.51□□□□□ -0.57
USP39-220ENST00000613444 TMEM140Q9NV12 185 aa11.51□□□□□ -0.57
USP39-220ENST00000613444 WASHC3Q9Y3C0 194 aa11.51□□□□□ -0.57
USP39-220ENST00000613444 TRAV3A0A0B4J244 114 aa11.5□□□□□ -0.57
USP39-220ENST00000613444 MSGN1A6NI15 193 aa11.5□□□□□ -0.57
USP39-220ENST00000613444 H7C2Y5 167 aa11.5□□□□□ -0.57
USP39-220ENST00000613444 TMEM50AO95807 157 aa11.5□□□□□ -0.57
USP39-220ENST00000613444 MC5RP33032 325 aa11.5□□□□□ -0.57
USP39-220ENST00000613444 OR4A47Q6IF82 309 aa11.5□□□□□ -0.57
USP39-220ENST00000613444 DYNAPQ8N1N2 210 aa11.5□□□□□ -0.57
USP39-220ENST00000613444 RITA1Q96K30 269 aa11.5□□□□□ -0.57
USP39-220ENST00000613444 NSG2Q9Y328 171 aa11.5□□□□□ -0.57
USP39-220ENST00000613444 IGHV3-72A0A0B4J1Y9 119 aa11.5□□□□□ -0.57
USP39-220ENST00000613444 CENPVL3A0A0U1RRI6 287 aa11.5□□□□□ -0.57
USP39-220ENST00000613444 HRASP01112 189 aa11.5□□□□□ -0.57
USP39-220ENST00000613444 ARHGDIBP52566 201 aa11.5□□□□□ -0.57
USP39-220ENST00000613444 RELBQ01201 579 aa11.5□□□□□ -0.57
USP39-220ENST00000613444 HABP2Q14520 560 aaPredicted RBP11.5□□□□□ -0.57
USP39-220ENST00000613444 ZNF345Q14585 488 aa11.5□□□□□ -0.57
USP39-220ENST00000613444 MINOS1Q5TGZ0 78 aa11.5□□□□□ -0.57
USP39-220ENST00000613444 ACOT7LQ6ZUV0 252 aa11.5□□□□□ -0.57
USP39-220ENST00000613444 MAPK1IP1LQ8NDC0 245 aa11.5□□□□□ -0.57
USP39-220ENST00000613444 OR4C13Q8NGP0 309 aa11.5□□□□□ -0.57
USP39-220ENST00000613444 CFHR4Q92496 578 aa11.5□□□□□ -0.57
USP39-220ENST00000613444 Q96MF0 132 aa11.5□□□□□ -0.57
USP39-220ENST00000613444 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.5□□□□□ -0.57
USP39-220ENST00000613444 HSPB7Q9UBY9 170 aa11.5□□□□□ -0.57
USP39-220ENST00000613444 MINOS1-NBL1R4GNA1 71 aa11.5□□□□□ -0.57
USP39-220ENST00000613444 PLXNB1O43157 2135 aa11.49□□□□□ -0.57
USP39-220ENST00000613444 FAM90A26D6RGX4 464 aa11.49□□□□□ -0.57
USP39-220ENST00000613444 IGLV2-23P01705 113 aa11.49□□□□□ -0.57
USP39-220ENST00000613444 PAX6P26367 422 aa11.49□□□□□ -0.57
USP39-220ENST00000613444 RAB13P51153 203 aa11.49□□□□□ -0.57
USP39-220ENST00000613444 PAX9P55771 341 aa11.49□□□□□ -0.57
USP39-220ENST00000613444 ERVK-16P61578 105 aa11.49□□□□□ -0.57
USP39-220ENST00000613444 IFITM2Q01629 132 aa11.49□□□□□ -0.57
USP39-220ENST00000613444 FLYWCH2Q96CP2 140 aaKnown RBP11.49□□□□□ -0.57
USP39-220ENST00000613444 HIF1ANQ9NWT6 349 aa11.49□□□□□ -0.57
USP39-220ENST00000613444 HILPDAQ9Y5L2 63 aa11.49□□□□□ -0.57
USP39-220ENST00000613444 ABCA1O95477 2261 aa11.49□□□□□ -0.57
USP39-220ENST00000613444 TRAV20A0A0B4J274 112 aa11.48□□□□□ -0.57
USP39-220ENST00000613444 E5RGE8 158 aa11.48□□□□□ -0.57
USP39-220ENST00000613444 L7N2F9 121 aa11.48□□□□□ -0.57
USP39-220ENST00000613444 SHOXO15266 292 aa11.48□□□□□ -0.57
USP39-220ENST00000613444 SSSCA1O60232 199 aa11.48□□□□□ -0.57
USP39-220ENST00000613444 SNAPC5O75971 98 aa11.48□□□□□ -0.57
USP39-220ENST00000613444 RLN2P04090 185 aa11.48□□□□□ -0.57
USP39-220ENST00000613444 CEACAM3P40198 252 aa11.48□□□□□ -0.57
USP39-220ENST00000613444 TNFRSF9Q07011 255 aa11.48□□□□□ -0.57
USP39-220ENST00000613444 MOB3BQ86TA1 216 aa11.48□□□□□ -0.57
USP39-220ENST00000613444 PUSL1Q8N0Z8 303 aaKnown RBP11.48□□□□□ -0.57
USP39-220ENST00000613444 OR8H3Q8N146 312 aa11.48□□□□□ -0.57
USP39-220ENST00000613444 PIP4P2Q8N4L2 257 aa11.48□□□□□ -0.57
USP39-220ENST00000613444 KCNRGQ8N5I3 272 aa11.48□□□□□ -0.57
USP39-220ENST00000613444 LINC01356Q8N9X3 169 aa11.48□□□□□ -0.57
USP39-220ENST00000613444 HARBI1Q96MB7 349 aa11.48□□□□□ -0.57
USP39-220ENST00000613444 AQP10Q96PS8 301 aa11.48□□□□□ -0.57
USP39-220ENST00000613444 TBL2Q9Y4P3 447 aaKnown RBP11.48□□□□□ -0.57
USP39-220ENST00000613444 CSPG4Q6UVK1 2322 aa11.48□□□□□ -0.57
USP39-220ENST00000613444 TEX15Q9BXT5 2789 aa11.48□□□□□ -0.57
USP39-220ENST00000613444 TIMM23O14925 209 aa11.48□□□□□ -0.57
USP39-220ENST00000613444 CHST1O43916 411 aa11.48□□□□□ -0.57
USP39-220ENST00000613444 OR2F2O95006 317 aa11.48□□□□□ -0.57
USP39-220ENST00000613444 SAA1P0DJI8 122 aaPredicted RBP11.48□□□□□ -0.57
USP39-220ENST00000613444 HKR1P10072 659 aa11.48□□□□□ -0.57
USP39-220ENST00000613444 AP2S1P53680 142 aaPredicted RBP11.48□□□□□ -0.57
USP39-220ENST00000613444 OR2F1Q13607 317 aa11.48□□□□□ -0.57
USP39-220ENST00000613444 TMUB2Q71RG4 321 aa11.48□□□□□ -0.57
USP39-220ENST00000613444 QTRT1Q9BXR0 403 aaKnown RBP11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms