RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 PDLIM3Q53GG5 364 aaPredicted RBP11.72□□□□□ -0.53
COL6A1-207ENST00000612273 TMEM183AQ8IXX5 376 aa11.72□□□□□ -0.53
COL6A1-207ENST00000612273 IMMP2LQ96T52 175 aa11.72□□□□□ -0.53
COL6A1-207ENST00000612273 ATG101Q9BSB4 218 aa11.72□□□□□ -0.53
COL6A1-207ENST00000612273 NKX2-8O15522 239 aa11.72□□□□□ -0.53
COL6A1-207ENST00000612273 NUBP1P53384 320 aa11.72□□□□□ -0.53
COL6A1-207ENST00000612273 HES3Q5TGS1 186 aa11.72□□□□□ -0.53
COL6A1-207ENST00000612273 Q8IYB0 196 aa11.72□□□□□ -0.53
COL6A1-207ENST00000612273 TMEM256Q8N2U0 113 aa11.72□□□□□ -0.53
COL6A1-207ENST00000612273 ZNF664Q8N3J9 261 aa11.72□□□□□ -0.53
COL6A1-207ENST00000612273 CD1BP29016 333 aa11.71□□□□□ -0.53
COL6A1-207ENST00000612273 MISP3Q96FF7 219 aa11.71□□□□□ -0.53
COL6A1-207ENST00000612273 TACC2O95359 2948 aa11.71□□□□□ -0.53
COL6A1-207ENST00000612273 OOEPA6NGQ2 149 aa11.71□□□□□ -0.53
COL6A1-207ENST00000612273 DVL1O14640 695 aa11.71□□□□□ -0.53
COL6A1-207ENST00000612273 GNB1P62873 340 aa11.71□□□□□ -0.53
COL6A1-207ENST00000612273 WDR82Q6UXN9 313 aa11.71□□□□□ -0.53
COL6A1-207ENST00000612273 OR4A16Q8NH70 328 aa11.71□□□□□ -0.53
COL6A1-207ENST00000612273 YLPM1P49750 1951 aaKnown RBP11.71□□□□□ -0.54
COL6A1-207ENST00000612273 GATCO43716 136 aaKnown RBP11.71□□□□□ -0.54
COL6A1-207ENST00000612273 HRASP01112 189 aa11.71□□□□□ -0.54
COL6A1-207ENST00000612273 ARL14EPLP0DKL9 152 aa11.71□□□□□ -0.54
COL6A1-207ENST00000612273 SLC35B1P78383 322 aa11.71□□□□□ -0.54
COL6A1-207ENST00000612273 SPRNQ5BIV9 151 aa11.71□□□□□ -0.54
COL6A1-207ENST00000612273 SGMS2Q8NHU3 365 aa11.71□□□□□ -0.54
COL6A1-207ENST00000612273 CTDSP1Q9GZU7 261 aa11.71□□□□□ -0.54
COL6A1-207ENST00000612273 WIPI2Q9Y4P8 454 aa11.71□□□□□ -0.54
COL6A1-207ENST00000612273 SLC17A3O00476 420 aa11.7□□□□□ -0.54
COL6A1-207ENST00000612273 OR4A8P0C604 315 aa11.7□□□□□ -0.54
COL6A1-207ENST00000612273 PKIAP61925 76 aa11.7□□□□□ -0.54
COL6A1-207ENST00000612273 ACP7Q6ZNF0 438 aa11.7□□□□□ -0.54
COL6A1-207ENST00000612273 C15orf62A8K5M9 175 aa11.7□□□□□ -0.54
COL6A1-207ENST00000612273 CD82P27701 267 aa11.7□□□□□ -0.54
COL6A1-207ENST00000612273 GCH1P30793 250 aa11.7□□□□□ -0.54
COL6A1-207ENST00000612273 HOXA6P31267 233 aa11.7□□□□□ -0.54
COL6A1-207ENST00000612273 SPATA31B1PQ5VZV4 182 aa11.7□□□□□ -0.54
COL6A1-207ENST00000612273 C11orf53Q8IXP5 236 aa11.7□□□□□ -0.54
COL6A1-207ENST00000612273 PLXNB1O43157 2135 aa11.7□□□□□ -0.54
COL6A1-207ENST00000612273 TNRC6AQ8NDV7 1962 aaKnown RBP11.7□□□□□ -0.54
COL6A1-207ENST00000612273 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP11.7□□□□□ -0.54
COL6A1-207ENST00000612273 SCO2A0A1W2PP80 73 aa11.7□□□□□ -0.54
COL6A1-207ENST00000612273 PMS2P5A8MQ11 134 aa11.7□□□□□ -0.54
COL6A1-207ENST00000612273 NUPR1O60356 82 aa11.7□□□□□ -0.54
COL6A1-207ENST00000612273 PROP1O75360 226 aa11.7□□□□□ -0.54
COL6A1-207ENST00000612273 IL3RAP26951 378 aa11.7□□□□□ -0.54
COL6A1-207ENST00000612273 CD177Q8N6Q3 437 aa11.7□□□□□ -0.54
COL6A1-207ENST00000612273 TMEM242Q9NWH2 141 aa11.7□□□□□ -0.54
COL6A1-207ENST00000612273 ZNRD1Q9P1U0 126 aa11.7□□□□□ -0.54
COL6A1-207ENST00000612273 TRAPPC1Q9Y5R8 145 aa11.7□□□□□ -0.54
COL6A1-207ENST00000612273 RBFOX2O43251 390 aaKnown RBP eCLIP11.69□□□□□ -0.54
COL6A1-207ENST00000612273 SPINT2O43291 252 aa11.69□□□□□ -0.54
COL6A1-207ENST00000612273 CLDN14O95500 239 aa11.69□□□□□ -0.54
COL6A1-207ENST00000612273 ACOT6Q3I5F7 207 aaPredicted RBP11.69□□□□□ -0.54
COL6A1-207ENST00000612273 SPRY4Q9C004 299 aa11.69□□□□□ -0.54
COL6A1-207ENST00000612273 OPN3Q9H1Y3 402 aaPredicted RBP11.69□□□□□ -0.54
COL6A1-207ENST00000612273 HCFC1P51610 2035 aa11.69□□□□□ -0.54
COL6A1-207ENST00000612273 ZNF705FA8MVS1 300 aaPredicted RBP11.69□□□□□ -0.54
COL6A1-207ENST00000612273 NPIPB11E5RHQ5 1161 aa11.69□□□□□ -0.54
COL6A1-207ENST00000612273 SPRY3O43610 288 aa11.69□□□□□ -0.54
COL6A1-207ENST00000612273 FRMD6-AS1P0C7T7 363 aa11.69□□□□□ -0.54
COL6A1-207ENST00000612273 CECR9P0C854 216 aa11.69□□□□□ -0.54
COL6A1-207ENST00000612273 ZNF705DP0CH99 300 aaPredicted RBP11.69□□□□□ -0.54
COL6A1-207ENST00000612273 ZNF705BP0CI00 300 aaPredicted RBP11.69□□□□□ -0.54
COL6A1-207ENST00000612273 GATA2P23769 480 aaPredicted RBP11.69□□□□□ -0.54
COL6A1-207ENST00000612273 PRR31Q5SQ13 230 aa11.69□□□□□ -0.54
COL6A1-207ENST00000612273 FER1L6-AS2Q96M78 137 aa11.69□□□□□ -0.54
COL6A1-207ENST00000612273 ZPBPQ9BS86 351 aa11.69□□□□□ -0.54
COL6A1-207ENST00000612273 MS4A5Q9H3V2 200 aa11.69□□□□□ -0.54
COL6A1-207ENST00000612273 OR6C3Q9NZP0 311 aa11.69□□□□□ -0.54
COL6A1-207ENST00000612273 KALRNO60229 2985 aa11.68□□□□□ -0.54
COL6A1-207ENST00000612273 GNG10P50151 68 aa11.68□□□□□ -0.54
COL6A1-207ENST00000612273 GABRA6Q16445 453 aa11.68□□□□□ -0.54
COL6A1-207ENST00000612273 DUX4L9Q6RFH8 374 aaPredicted RBP11.68□□□□□ -0.54
COL6A1-207ENST00000612273 MOB3BQ86TA1 216 aa11.68□□□□□ -0.54
COL6A1-207ENST00000612273 DEFB123Q8N688 67 aa11.68□□□□□ -0.54
COL6A1-207ENST00000612273 MDS2Q8NDY4 140 aa11.68□□□□□ -0.54
COL6A1-207ENST00000612273 C17orf112F2Z3M2 114 aa11.68□□□□□ -0.54
COL6A1-207ENST00000612273 TMEM250H0YL14 139 aa11.68□□□□□ -0.54
COL6A1-207ENST00000612273 SLC31A2O15432 143 aa11.68□□□□□ -0.54
COL6A1-207ENST00000612273 PRDX2P32119 198 aa11.68□□□□□ -0.54
COL6A1-207ENST00000612273 ZNF83P51522 516 aa11.68□□□□□ -0.54
COL6A1-207ENST00000612273 FAM214BQ7L5A3 538 aa11.68□□□□□ -0.54
COL6A1-207ENST00000612273 LINC01551Q86U37 167 aa11.68□□□□□ -0.54
COL6A1-207ENST00000612273 CBLN4Q9NTU7 201 aa11.68□□□□□ -0.54
COL6A1-207ENST00000612273 TRBV20OR9-2A0A075B6H5 130 aa11.68□□□□□ -0.54
COL6A1-207ENST00000612273 CBLN1P23435 193 aa11.68□□□□□ -0.54
COL6A1-207ENST00000612273 ZNF134P52741 427 aa11.68□□□□□ -0.54
COL6A1-207ENST00000612273 MED13LQ71F56 2210 aa11.67□□□□□ -0.54
COL6A1-207ENST00000612273 FAM90A26D6RGX4 464 aa11.67□□□□□ -0.54
COL6A1-207ENST00000612273 FOXH1O75593 365 aa11.67□□□□□ -0.54
COL6A1-207ENST00000612273 MBP02144 154 aa11.67□□□□□ -0.54
COL6A1-207ENST00000612273 JOSD1Q15040 202 aaPredicted RBP11.67□□□□□ -0.54
COL6A1-207ENST00000612273 C9orf106Q8NAJ2 232 aa11.67□□□□□ -0.54
COL6A1-207ENST00000612273 DDA1Q9BW61 102 aa11.67□□□□□ -0.54
COL6A1-207ENST00000612273 SEPSECSQ9HD40 501 aaKnown RBP11.67□□□□□ -0.54
COL6A1-207ENST00000612273 PXMP4Q9Y6I8 212 aa11.67□□□□□ -0.54
COL6A1-207ENST00000612273 PIGBOS1A0A0B4J2F0 54 aa11.67□□□□□ -0.54
COL6A1-207ENST00000612273 IQCF6A8MYZ5 107 aa11.67□□□□□ -0.54
COL6A1-207ENST00000612273 IGHV3-48P01763 117 aa11.67□□□□□ -0.54
COL6A1-207ENST00000612273 G0S2P27469 103 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms