RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 OR8H3Q8N146 312 aa6.96□□□□□ -1.3
TRIM28-214ENST00000600840 C9orf62Q8N4C0 152 aa6.96□□□□□ -1.3
TRIM28-214ENST00000600840 ZNF645Q8N7E2 425 aa6.96□□□□□ -1.3
TRIM28-214ENST00000600840 ZBTB34Q8NCN2 500 aa6.96□□□□□ -1.3
TRIM28-214ENST00000600840 OR11H7Q8NGC8 314 aa6.96□□□□□ -1.3
TRIM28-214ENST00000600840 OR10X1Q8NGY0 326 aa6.96□□□□□ -1.3
TRIM28-214ENST00000600840 AKR1E2Q96JD6 320 aa6.96□□□□□ -1.3
TRIM28-214ENST00000600840 SCGB3A2Q96PL1 93 aa6.96□□□□□ -1.3
TRIM28-214ENST00000600840 OR2A7Q96R45 310 aa6.96□□□□□ -1.3
TRIM28-214ENST00000600840 MRPL20Q9BYC9 149 aaKnown RBP6.96□□□□□ -1.3
TRIM28-214ENST00000600840 SLC5A7Q9GZV3 580 aa6.96□□□□□ -1.3
TRIM28-214ENST00000600840 OR2D2Q9H210 308 aa6.96□□□□□ -1.3
TRIM28-214ENST00000600840 ZNF702PQ9H963 129 aa6.96□□□□□ -1.3
TRIM28-214ENST00000600840 PLSCR3Q9NRY6 295 aa6.96□□□□□ -1.3
TRIM28-214ENST00000600840 AMMECR1Q9Y4X0 333 aaPredicted RBP6.96□□□□□ -1.3
TRIM28-214ENST00000600840 A6NDX4 124 aa6.95□□□□□ -1.3
TRIM28-214ENST00000600840 HMSDA8MTL9 139 aa6.95□□□□□ -1.3
TRIM28-214ENST00000600840 H0YJW9 148 aa6.95□□□□□ -1.3
TRIM28-214ENST00000600840 PGLYRP1O75594 196 aaPredicted RBP6.95□□□□□ -1.3
TRIM28-214ENST00000600840 SLC22A5O76082 557 aa6.95□□□□□ -1.3
TRIM28-214ENST00000600840 IFNA6P05013 189 aa6.95□□□□□ -1.3
TRIM28-214ENST00000600840 IL3RAP26951 378 aa6.95□□□□□ -1.3
TRIM28-214ENST00000600840 CD1BP29016 333 aa6.95□□□□□ -1.3
TRIM28-214ENST00000600840 GPR12P47775 334 aa6.95□□□□□ -1.3
TRIM28-214ENST00000600840 TAS2R31P59538 309 aa6.95□□□□□ -1.3
TRIM28-214ENST00000600840 RND3P61587 244 aa6.95□□□□□ -1.3
TRIM28-214ENST00000600840 TSPAN5P62079 268 aa6.95□□□□□ -1.3
TRIM28-214ENST00000600840 SURF2Q15527 256 aaPredicted RBP6.95□□□□□ -1.3
TRIM28-214ENST00000600840 IDO2Q6ZQW0 420 aa6.95□□□□□ -1.3
TRIM28-214ENST00000600840 TMEM219Q86XT9 240 aa6.95□□□□□ -1.3
TRIM28-214ENST00000600840 TGIF2LXQ8IUE1 241 aa6.95□□□□□ -1.3
TRIM28-214ENST00000600840 KLHDC1Q8N7A1 406 aa6.95□□□□□ -1.3
TRIM28-214ENST00000600840 UXS1Q8NBZ7 420 aa6.95□□□□□ -1.3
TRIM28-214ENST00000600840 MARCH1Q8TCQ1 289 aa6.95□□□□□ -1.3
TRIM28-214ENST00000600840 SECTM1Q8WVN6 248 aa6.95□□□□□ -1.3
TRIM28-214ENST00000600840 TOMM40LQ969M1 308 aa6.95□□□□□ -1.3
TRIM28-214ENST00000600840 TMEM230Q96A57 120 aa6.95□□□□□ -1.3
TRIM28-214ENST00000600840 RPEQ96AT9 228 aa6.95□□□□□ -1.3
TRIM28-214ENST00000600840 RITA1Q96K30 269 aa6.95□□□□□ -1.3
TRIM28-214ENST00000600840 GPHA2Q96T91 129 aa6.95□□□□□ -1.3
TRIM28-214ENST00000600840 C5orf66Q9H5L9 145 aa6.95□□□□□ -1.3
TRIM28-214ENST00000600840 SERTAD4Q9NUC0 356 aa6.95□□□□□ -1.3
TRIM28-214ENST00000600840 VSIG4Q9Y279 399 aa6.95□□□□□ -1.3
TRIM28-214ENST00000600840 ADARB2-AS1A8MUL3 147 aa6.94□□□□□ -1.3
TRIM28-214ENST00000600840 M0R1X1 148 aa6.94□□□□□ -1.3
TRIM28-214ENST00000600840 GPR31O00270 319 aa6.94□□□□□ -1.3
TRIM28-214ENST00000600840 TXNL1O43396 289 aa6.94□□□□□ -1.3
TRIM28-214ENST00000600840 AMY1AP04745 511 aa6.94□□□□□ -1.3
TRIM28-214ENST00000600840 CTSDP07339 412 aaPredicted RBP6.94□□□□□ -1.3
TRIM28-214ENST00000600840 VSIG10L2P0DP72 767 aa6.94□□□□□ -1.3
TRIM28-214ENST00000600840 CD28P10747 220 aa6.94□□□□□ -1.3
TRIM28-214ENST00000600840 CD24P25063 80 aa6.94□□□□□ -1.3
TRIM28-214ENST00000600840 ECI1P42126 302 aa6.94□□□□□ -1.3
TRIM28-214ENST00000600840 FXYD4P59646 89 aa6.94□□□□□ -1.3
TRIM28-214ENST00000600840 RAB14P61106 215 aa6.94□□□□□ -1.3
TRIM28-214ENST00000600840 BLCAPP62952 87 aa6.94□□□□□ -1.3
TRIM28-214ENST00000600840 C2orf68Q2NKX9 166 aa6.94□□□□□ -1.3
TRIM28-214ENST00000600840 ZNF585BQ52M93 769 aa6.94□□□□□ -1.3
TRIM28-214ENST00000600840 LIN54Q6MZP7 749 aa6.94□□□□□ -1.3
TRIM28-214ENST00000600840 CCDC144NLQ6NUI1 221 aa6.94□□□□□ -1.3
TRIM28-214ENST00000600840 ZNF66Q6ZN08 573 aa6.94□□□□□ -1.3
TRIM28-214ENST00000600840 REC114Q7Z4M0 266 aa6.94□□□□□ -1.3
TRIM28-214ENST00000600840 TMEM17Q86X19 198 aa6.94□□□□□ -1.3
TRIM28-214ENST00000600840 OR2T35Q8NGX2 323 aa6.94□□□□□ -1.3
TRIM28-214ENST00000600840 WIPF2Q8TF74 440 aaPredicted RBP6.94□□□□□ -1.3
TRIM28-214ENST00000600840 EAF1Q96JC9 268 aaPredicted RBP6.94□□□□□ -1.3
TRIM28-214ENST00000600840 S1PR3Q99500 378 aa6.94□□□□□ -1.3
TRIM28-214ENST00000600840 AURKAIP1Q9NWT8 199 aaPredicted RBP6.94□□□□□ -1.3
TRIM28-214ENST00000600840 MGAT4CQ9UBM8 478 aa6.94□□□□□ -1.3
TRIM28-214ENST00000600840 IGHV3-72A0A0B4J1Y9 119 aa6.93□□□□□ -1.3
TRIM28-214ENST00000600840 SRRM4A7MD48 611 aaKnown RBP6.93□□□□□ -1.3
TRIM28-214ENST00000600840 IGKV1-16P04430 117 aa6.93□□□□□ -1.3
TRIM28-214ENST00000600840 CRYGBP07316 175 aa6.93□□□□□ -1.3
TRIM28-214ENST00000600840 SNRNP70P08621 437 aaKnown RBP6.93□□□□□ -1.3
TRIM28-214ENST00000600840 IL6RP08887 468 aaPredicted RBP6.93□□□□□ -1.3
TRIM28-214ENST00000600840 PI3P19957 117 aa6.93□□□□□ -1.3
TRIM28-214ENST00000600840 HERV-K104P61576 105 aa6.93□□□□□ -1.3
TRIM28-214ENST00000600840 SUPT4H1P63272 117 aaKnown RBP6.93□□□□□ -1.3
TRIM28-214ENST00000600840 MRGPRG-AS1Q2M3A8 158 aa6.93□□□□□ -1.3
TRIM28-214ENST00000600840 TMEM95Q3KNT9 176 aa6.93□□□□□ -1.3
TRIM28-214ENST00000600840 SCGB2B2Q4G0G5 96 aa6.93□□□□□ -1.3
TRIM28-214ENST00000600840 OXLD1Q5BKU9 147 aa6.93□□□□□ -1.3
TRIM28-214ENST00000600840 LAMTOR1Q6IAA8 161 aa6.93□□□□□ -1.3
TRIM28-214ENST00000600840 TEX261Q6UWH6 196 aa6.93□□□□□ -1.3
TRIM28-214ENST00000600840 SLC38A6Q8IZM9 456 aa6.93□□□□□ -1.3
TRIM28-214ENST00000600840 Q8N2B8 174 aa6.93□□□□□ -1.3
TRIM28-214ENST00000600840 ADAD2Q8NCV1 583 aaKnown RBP6.93□□□□□ -1.3
TRIM28-214ENST00000600840 OR4C13Q8NGP0 309 aa6.93□□□□□ -1.3
TRIM28-214ENST00000600840 OR2T6Q8NHC8 308 aa6.93□□□□□ -1.3
TRIM28-214ENST00000600840 HSD17B10Q99714 261 aaKnown RBP6.93□□□□□ -1.3
TRIM28-214ENST00000600840 SLC2A9Q9NRM0 540 aa6.93□□□□□ -1.3
TRIM28-214ENST00000600840 UBQLN2Q9UHD9 624 aa6.93□□□□□ -1.3
TRIM28-214ENST00000600840 FLVCR2Q9UPI3 526 aa6.93□□□□□ -1.3
TRIM28-214ENST00000600840 TCF19Q9Y242 345 aa6.93□□□□□ -1.3
TRIM28-214ENST00000600840 U3KQ87 197 aa6.93□□□□□ -1.3
TRIM28-214ENST00000600840 LINC00862A6NCI5 91 aa6.92□□□□□ -1.3
TRIM28-214ENST00000600840 MPPED1O15442 326 aa6.92□□□□□ -1.3
TRIM28-214ENST00000600840 RBFOX2O43251 390 aaKnown RBP eCLIP6.92□□□□□ -1.3
TRIM28-214ENST00000600840 TNFSF12O43508 249 aa6.92□□□□□ -1.3
TRIM28-214ENST00000600840 IGKV1-39P01597 117 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms