RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 LINC01548A6NM66 108 aa15.28■□□□□ 0.04
UPF1-209ENST00000600310 MPPED1O15442 326 aa15.28■□□□□ 0.04
UPF1-209ENST00000600310 VSIG10L2P0DP72 767 aa15.28■□□□□ 0.04
UPF1-209ENST00000600310 CD40LGP29965 261 aa15.28■□□□□ 0.04
UPF1-209ENST00000600310 PIGPP57054 158 aa15.28■□□□□ 0.04
UPF1-209ENST00000600310 VMA21Q3ZAQ7 101 aa15.28■□□□□ 0.04
UPF1-209ENST00000600310 FOXRED2Q8IWF2 684 aa15.28■□□□□ 0.04
UPF1-209ENST00000600310 KLHDC1Q8N7A1 406 aa15.28■□□□□ 0.04
UPF1-209ENST00000600310 TEX45Q8NA69 505 aa15.28■□□□□ 0.04
UPF1-209ENST00000600310 SCGB3A2Q96PL1 93 aa15.28■□□□□ 0.04
UPF1-209ENST00000600310 GPR132Q9UNW8 380 aa15.28■□□□□ 0.04
UPF1-209ENST00000600310 FCN1O00602 326 aa15.27■□□□□ 0.04
UPF1-209ENST00000600310 HPRT1P00492 218 aa15.27■□□□□ 0.04
UPF1-209ENST00000600310 PPP1R27Q86WC6 154 aa15.27■□□□□ 0.04
UPF1-209ENST00000600310 CCDC71LQ8N9Z2 235 aa15.27■□□□□ 0.04
UPF1-209ENST00000600310 WIPF2Q8TF74 440 aaPredicted RBP15.27■□□□□ 0.04
UPF1-209ENST00000600310 RTBDNQ9BSG5 229 aaPredicted RBP15.27■□□□□ 0.04
UPF1-209ENST00000600310 WDR12Q9GZL7 423 aaKnown RBP15.27■□□□□ 0.04
UPF1-209ENST00000600310 C5orf66Q9H5L9 145 aa15.27■□□□□ 0.04
UPF1-209ENST00000600310 PLEKHA2Q9HB19 425 aa15.27■□□□□ 0.04
UPF1-209ENST00000600310 TPSG1Q9NRR2 321 aa15.27■□□□□ 0.04
UPF1-209ENST00000600310 FAM212BQ9NTI7 297 aaPredicted RBP15.27■□□□□ 0.04
UPF1-209ENST00000600310 COPZ2Q9P299 210 aa15.27■□□□□ 0.04
UPF1-209ENST00000600310 C14orf166Q9Y224 244 aaKnown RBP15.27■□□□□ 0.04
UPF1-209ENST00000600310 NAP1L6A6NFF2 107 aa15.26■□□□□ 0.03
UPF1-209ENST00000600310 AP4M1O00189 453 aa15.26■□□□□ 0.03
UPF1-209ENST00000600310 HRASP01112 189 aa15.26■□□□□ 0.03
UPF1-209ENST00000600310 SAA1P0DJI8 122 aaPredicted RBP15.26■□□□□ 0.03
UPF1-209ENST00000600310 KRTAP10-3P60369 221 aa15.26■□□□□ 0.03
UPF1-209ENST00000600310 CX3CL1P78423 397 aa15.26■□□□□ 0.03
UPF1-209ENST00000600310 ZNF846Q147U1 533 aa15.26■□□□□ 0.03
UPF1-209ENST00000600310 ZNF585BQ52M93 769 aa15.26■□□□□ 0.03
UPF1-209ENST00000600310 ZNF562Q6V9R5 426 aa15.26■□□□□ 0.03
UPF1-209ENST00000600310 AIFM2Q9BRQ8 373 aa15.26■□□□□ 0.03
UPF1-209ENST00000600310 OR51J1Q9H342 316 aa15.26■□□□□ 0.03
UPF1-209ENST00000600310 COMMD9Q9P000 198 aa15.26■□□□□ 0.03
UPF1-209ENST00000600310 ZNF580Q9UK33 172 aa15.26■□□□□ 0.03
UPF1-209ENST00000600310 S1PR2O95136 353 aa15.25■□□□□ 0.03
UPF1-209ENST00000600310 IGF1P05019 195 aa15.25■□□□□ 0.03
UPF1-209ENST00000600310 TAS2R31P59538 309 aa15.25■□□□□ 0.03
UPF1-209ENST00000600310 POU2AF1Q16633 256 aa15.25■□□□□ 0.03
UPF1-209ENST00000600310 MRGPRG-AS1Q2M3A8 158 aa15.25■□□□□ 0.03
UPF1-209ENST00000600310 VKORC1L1Q8N0U8 176 aa15.25■□□□□ 0.03
UPF1-209ENST00000600310 STPG2Q8N412 459 aa15.25■□□□□ 0.03
UPF1-209ENST00000600310 CHPT1Q8WUD6 406 aa15.25■□□□□ 0.03
UPF1-209ENST00000600310 RHOVQ96L33 236 aa15.25■□□□□ 0.03
UPF1-209ENST00000600310 NOL4LQ96MY1 436 aaPredicted RBP15.25■□□□□ 0.03
UPF1-209ENST00000600310 CLCC1Q96S66 551 aa15.25■□□□□ 0.03
UPF1-209ENST00000600310 C7orf50Q9BRJ6 194 aaKnown RBP15.25■□□□□ 0.03
UPF1-209ENST00000600310 VSIG4Q9Y279 399 aa15.25■□□□□ 0.03
UPF1-209ENST00000600310 LINC00854A0A1B0GVQ3 168 aa15.24■□□□□ 0.03
UPF1-209ENST00000600310 H0Y980 276 aa15.24■□□□□ 0.03
UPF1-209ENST00000600310 OR2A4O95047 310 aa15.24■□□□□ 0.03
UPF1-209ENST00000600310 CA2P00918 260 aa15.24■□□□□ 0.03
UPF1-209ENST00000600310 NQO2P16083 231 aa15.24■□□□□ 0.03
UPF1-209ENST00000600310 LPAR6P43657 344 aa15.24■□□□□ 0.03
UPF1-209ENST00000600310 NDPQ00604 133 aa15.24■□□□□ 0.03
UPF1-209ENST00000600310 PRSS8Q16651 343 aa15.24■□□□□ 0.03
UPF1-209ENST00000600310 SHISA2Q6UWI4 295 aa15.24■□□□□ 0.03
UPF1-209ENST00000600310 CENPVQ7Z7K6 275 aaPredicted RBP15.24■□□□□ 0.03
UPF1-209ENST00000600310 PUSL1Q8N0Z8 303 aaKnown RBP15.24■□□□□ 0.03
UPF1-209ENST00000600310 VSTM2AQ8TAG5 236 aa15.24■□□□□ 0.03
UPF1-209ENST00000600310 OR2A7Q96R45 310 aa15.24■□□□□ 0.03
UPF1-209ENST00000600310 SLC25A21Q9BQT8 299 aaPredicted RBP15.24■□□□□ 0.03
UPF1-209ENST00000600310 LINC00527Q9UJ94 153 aa15.24■□□□□ 0.03
UPF1-209ENST00000600310 CENPXA8MT69 81 aa15.23■□□□□ 0.03
UPF1-209ENST00000600310 ATP6V0E1O15342 81 aa15.23■□□□□ 0.03
UPF1-209ENST00000600310 SRSF4Q08170 494 aaKnown RBP15.23■□□□□ 0.03
UPF1-209ENST00000600310 PJVKQ0ZLH3 352 aa15.23■□□□□ 0.03
UPF1-209ENST00000600310 CITED1Q99966 193 aa15.23■□□□□ 0.03
UPF1-209ENST00000600310 PARP11Q9NR21 331 aa15.23■□□□□ 0.03
UPF1-209ENST00000600310 C3orf85A0A1B0GTC6 90 aa15.22■□□□□ 0.03
UPF1-209ENST00000600310 PSMB11A5LHX3 300 aa15.22■□□□□ 0.03
UPF1-209ENST00000600310 PLA2G10O15496 165 aa15.22■□□□□ 0.03
UPF1-209ENST00000600310 CREBL2O60519 120 aaPredicted RBP15.22■□□□□ 0.03
UPF1-209ENST00000600310 B3GALNT1O75752 331 aa15.22■□□□□ 0.03
UPF1-209ENST00000600310 SSBP2P81877 361 aaPredicted RBP15.22■□□□□ 0.03
UPF1-209ENST00000600310 FXYD3Q14802 87 aa15.22■□□□□ 0.03
UPF1-209ENST00000600310 SSX9Q7RTT3 188 aa15.22■□□□□ 0.03
UPF1-209ENST00000600310 CADM3Q8N126 398 aa15.22■□□□□ 0.03
UPF1-209ENST00000600310 OR5AU1Q8NGC0 362 aa15.22■□□□□ 0.03
UPF1-209ENST00000600310 OR4A5Q8NH83 315 aa15.22■□□□□ 0.03
UPF1-209ENST00000600310 TMEM167AQ8TBQ9 72 aa15.22■□□□□ 0.03
UPF1-209ENST00000600310 R3HDM4Q96D70 268 aa15.22■□□□□ 0.03
UPF1-209ENST00000600310 TP53RKQ96S44 253 aa15.22■□□□□ 0.03
UPF1-209ENST00000600310 GON7Q9BXV9 100 aa15.22■□□□□ 0.03
UPF1-209ENST00000600310 BET1LQ9NYM9 111 aa15.22■□□□□ 0.03
UPF1-209ENST00000600310 CRYM-AS1A6NIL9 109 aa15.21■□□□□ 0.03
UPF1-209ENST00000600310 ARPC1BO15143 372 aaKnown RBP15.21■□□□□ 0.03
UPF1-209ENST00000600310 KBTBD11O94819 623 aa15.21■□□□□ 0.03
UPF1-209ENST00000600310 SERPINE2P07093 398 aa15.21■□□□□ 0.03
UPF1-209ENST00000600310 IL6RP08887 468 aaPredicted RBP15.21■□□□□ 0.03
UPF1-209ENST00000600310 EGR2P11161 476 aaPredicted RBP15.21■□□□□ 0.03
UPF1-209ENST00000600310 CRIP2P52943 208 aaPredicted RBP15.21■□□□□ 0.03
UPF1-209ENST00000600310 ERVK-16P61578 105 aa15.21■□□□□ 0.03
UPF1-209ENST00000600310 RBMS2Q15434 407 aaKnown RBP15.21■□□□□ 0.03
UPF1-209ENST00000600310 OR4A47Q6IF82 309 aa15.21■□□□□ 0.03
UPF1-209ENST00000600310 MMD2Q8IY49 270 aa15.21■□□□□ 0.03
UPF1-209ENST00000600310 ADAD2Q8NCV1 583 aaKnown RBP15.21■□□□□ 0.03
UPF1-209ENST00000600310 ARPC1AQ92747 370 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms