RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 PF4V1P10720 104 aa11.89□□□□□ -0.51
LIG1-219ENST00000600055 PSMB8P28062 276 aa11.89□□□□□ -0.51
LIG1-219ENST00000600055 CRIP2P52943 208 aaPredicted RBP11.89□□□□□ -0.51
LIG1-219ENST00000600055 CNPY1Q3B7I2 92 aa11.89□□□□□ -0.51
LIG1-219ENST00000600055 CXorf66Q5JRM2 361 aaPredicted RBP11.89□□□□□ -0.51
LIG1-219ENST00000600055 VAX1Q5SQQ9 334 aa11.89□□□□□ -0.51
LIG1-219ENST00000600055 PYHIN1Q6K0P9 492 aa11.89□□□□□ -0.51
LIG1-219ENST00000600055 LINC00299Q6ZSB3 139 aa11.89□□□□□ -0.51
LIG1-219ENST00000600055 RNF152Q8N8N0 203 aa11.89□□□□□ -0.51
LIG1-219ENST00000600055 TEX45Q8NA69 505 aa11.89□□□□□ -0.51
LIG1-219ENST00000600055 MINDY2Q8NBR6 621 aa11.89□□□□□ -0.51
LIG1-219ENST00000600055 LFNGQ8NES3 379 aa11.89□□□□□ -0.51
LIG1-219ENST00000600055 OR4D10Q8NGI6 311 aa11.89□□□□□ -0.51
LIG1-219ENST00000600055 OR51H1Q8NH63 302 aa11.89□□□□□ -0.51
LIG1-219ENST00000600055 GRPEL2Q8TAA5 225 aa11.89□□□□□ -0.51
LIG1-219ENST00000600055 CASTOR1Q8WTX7 329 aa11.89□□□□□ -0.51
LIG1-219ENST00000600055 ARPC1AQ92747 370 aa11.89□□□□□ -0.51
LIG1-219ENST00000600055 ZFP57Q9NU63 452 aa11.89□□□□□ -0.51
LIG1-219ENST00000600055 PTTG2Q9NZH5 202 aa11.89□□□□□ -0.51
LIG1-219ENST00000600055 A0A1W2PN81 502 aa11.88□□□□□ -0.51
LIG1-219ENST00000600055 NUDT19A8MXV4 375 aa11.88□□□□□ -0.51
LIG1-219ENST00000600055 PGLYRP1O75594 196 aaPredicted RBP11.88□□□□□ -0.51
LIG1-219ENST00000600055 CNIH1O95406 144 aa11.88□□□□□ -0.51
LIG1-219ENST00000600055 IGLV1-40P01703 118 aa11.88□□□□□ -0.51
LIG1-219ENST00000600055 CHRNA7P36544 502 aa11.88□□□□□ -0.51
LIG1-219ENST00000600055 PRSS8Q16651 343 aa11.88□□□□□ -0.51
LIG1-219ENST00000600055 ACTBL2Q562R1 376 aa11.88□□□□□ -0.51
LIG1-219ENST00000600055 RNASE10Q5GAN6 216 aaKnown RBP11.88□□□□□ -0.51
LIG1-219ENST00000600055 SPANXN2Q5MJ10 180 aa11.88□□□□□ -0.51
LIG1-219ENST00000600055 AADACL3Q5VUY0 350 aa11.88□□□□□ -0.51
LIG1-219ENST00000600055 UNQ5815/PRO19632Q6UWF5 114 aa11.88□□□□□ -0.51
LIG1-219ENST00000600055 C8orf86Q6ZUL3 223 aa11.88□□□□□ -0.51
LIG1-219ENST00000600055 SPAG16Q8N0X2 631 aa11.88□□□□□ -0.51
LIG1-219ENST00000600055 TMEM229BQ8NBD8 167 aa11.88□□□□□ -0.51
LIG1-219ENST00000600055 KLHL30-AS1Q8NEE0 82 aa11.88□□□□□ -0.51
LIG1-219ENST00000600055 SMIM4Q8WVI0 70 aa11.88□□□□□ -0.51
LIG1-219ENST00000600055 SOSTQ9BQB4 213 aa11.88□□□□□ -0.51
LIG1-219ENST00000600055 CTDSPLO15194 276 aa11.87□□□□□ -0.51
LIG1-219ENST00000600055 RLN1P04808 185 aa11.87□□□□□ -0.51
LIG1-219ENST00000600055 KIR2DS2P43631 304 aa11.87□□□□□ -0.51
LIG1-219ENST00000600055 MRPS10P82664 201 aaKnown RBP11.87□□□□□ -0.51
LIG1-219ENST00000600055 CATR1Q13166 79 aa11.87□□□□□ -0.51
LIG1-219ENST00000600055 KIAA0141Q14154 515 aaPredicted RBP11.87□□□□□ -0.51
LIG1-219ENST00000600055 TNXAQ16473 311 aa11.87□□□□□ -0.51
LIG1-219ENST00000600055 PHLDA2Q53GA4 152 aa11.87□□□□□ -0.51
LIG1-219ENST00000600055 ETV3LQ6ZN32 361 aa11.87□□□□□ -0.51
LIG1-219ENST00000600055 SSX9Q7RTT3 188 aa11.87□□□□□ -0.51
LIG1-219ENST00000600055 DUX3Q96PT4 197 aa11.87□□□□□ -0.51
LIG1-219ENST00000600055 ZNF430Q9H8G1 570 aaPredicted RBP11.87□□□□□ -0.51
LIG1-219ENST00000600055 FOXA2Q9Y261 457 aaPredicted RBP11.87□□□□□ -0.51
LIG1-219ENST00000600055 WNK1Q9H4A3 2382 aa11.86□□□□□ -0.51
LIG1-219ENST00000600055 PLXNB1O43157 2135 aa11.86□□□□□ -0.51
LIG1-219ENST00000600055 FABP12A6NFH5 140 aa11.86□□□□□ -0.51
LIG1-219ENST00000600055 GPR31O00270 319 aa11.86□□□□□ -0.51
LIG1-219ENST00000600055 PF4P02776 101 aa11.86□□□□□ -0.51
LIG1-219ENST00000600055 CD74P04233 296 aa11.86□□□□□ -0.51
LIG1-219ENST00000600055 IFNA6P05013 189 aa11.86□□□□□ -0.51
LIG1-219ENST00000600055 APELAP0DMC3 54 aa11.86□□□□□ -0.51
LIG1-219ENST00000600055 PTBP1P26599 531 aaKnown RBP eCLIP11.86□□□□□ -0.51
LIG1-219ENST00000600055 TAS2R19P59542 299 aa11.86□□□□□ -0.51
LIG1-219ENST00000600055 TMEM267Q0VDI3 215 aaPredicted RBP11.86□□□□□ -0.51
LIG1-219ENST00000600055 AKIRIN2Q53H80 203 aa11.86□□□□□ -0.51
LIG1-219ENST00000600055 ASPHD1Q5U4P2 390 aa11.86□□□□□ -0.51
LIG1-219ENST00000600055 FAAP20Q6NZ36 180 aa11.86□□□□□ -0.51
LIG1-219ENST00000600055 TMEM65Q6PI78 240 aa11.86□□□□□ -0.51
LIG1-219ENST00000600055 ZNF695Q8IW36 515 aa11.86□□□□□ -0.51
LIG1-219ENST00000600055 PUSL1Q8N0Z8 303 aaKnown RBP11.86□□□□□ -0.51
LIG1-219ENST00000600055 MYOZ3Q8TDC0 251 aa11.86□□□□□ -0.51
LIG1-219ENST00000600055 BORCS5Q969J3 196 aa11.86□□□□□ -0.51
LIG1-219ENST00000600055 RSRP1Q9BUV0 290 aa11.86□□□□□ -0.51
LIG1-219ENST00000600055 RBFOX2O43251 390 aaKnown RBP eCLIP11.85□□□□□ -0.51
LIG1-219ENST00000600055 OR2A4O95047 310 aa11.85□□□□□ -0.51
LIG1-219ENST00000600055 S1PR2O95136 353 aa11.85□□□□□ -0.51
LIG1-219ENST00000600055 RAB3DO95716 219 aa11.85□□□□□ -0.51
LIG1-219ENST00000600055 TBPP20226 339 aa11.85□□□□□ -0.51
LIG1-219ENST00000600055 CDX1P47902 265 aaPredicted RBP11.85□□□□□ -0.51
LIG1-219ENST00000600055 RAB9AP51151 201 aa11.85□□□□□ -0.51
LIG1-219ENST00000600055 UCP3P55916 312 aa11.85□□□□□ -0.51
LIG1-219ENST00000600055 SSBP1Q04837 148 aaKnown RBP11.85□□□□□ -0.51
LIG1-219ENST00000600055 DEFB136Q30KP8 78 aa11.85□□□□□ -0.51
LIG1-219ENST00000600055 C10orf55Q5SWW7 151 aa11.85□□□□□ -0.51
LIG1-219ENST00000600055 STEAP1BQ6NZ63 245 aa11.85□□□□□ -0.51
LIG1-219ENST00000600055 LHFPL1Q86WI0 220 aa11.85□□□□□ -0.51
LIG1-219ENST00000600055 C1QL4Q86Z23 238 aa11.85□□□□□ -0.51
LIG1-219ENST00000600055 CMTM1Q8IZ96 169 aa11.85□□□□□ -0.51
LIG1-219ENST00000600055 ZNF491Q8N8L2 437 aa11.85□□□□□ -0.51
LIG1-219ENST00000600055 OR5T1Q8NG75 326 aa11.85□□□□□ -0.51
LIG1-219ENST00000600055 RHOVQ96L33 236 aa11.85□□□□□ -0.51
LIG1-219ENST00000600055 MS4A10Q96PG2 267 aa11.85□□□□□ -0.51
LIG1-219ENST00000600055 OR2A7Q96R45 310 aa11.85□□□□□ -0.51
LIG1-219ENST00000600055 GNB4Q9HAV0 340 aa11.85□□□□□ -0.51
LIG1-219ENST00000600055 MSGN1A6NI15 193 aa11.84□□□□□ -0.51
LIG1-219ENST00000600055 GSTZ1O43708 216 aaPredicted RBP11.84□□□□□ -0.51
LIG1-219ENST00000600055 KBTBD11O94819 623 aa11.84□□□□□ -0.51
LIG1-219ENST00000600055 HPRT1P00492 218 aa11.84□□□□□ -0.51
LIG1-219ENST00000600055 HRASP01112 189 aa11.84□□□□□ -0.51
LIG1-219ENST00000600055 ZNF735P0CB33 412 aa11.84□□□□□ -0.51
LIG1-219ENST00000600055 PGAM2P15259 253 aa11.84□□□□□ -0.51
LIG1-219ENST00000600055 RPA2P15927 270 aa11.84□□□□□ -0.51
LIG1-219ENST00000600055 PI3P19957 117 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms