RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 RAMP3O60896 148 aa14.36□□□□□ -0.11
LIG1-216ENST00000598938 CRYGBP07316 175 aa14.36□□□□□ -0.11
LIG1-216ENST00000598938 LIN54Q6MZP7 749 aa14.36□□□□□ -0.11
LIG1-216ENST00000598938 SLC35E3Q7Z769 313 aa14.36□□□□□ -0.11
LIG1-216ENST00000598938 TBC1D26Q86UD7 250 aa14.36□□□□□ -0.11
LIG1-216ENST00000598938 TCTEX1D1Q8N7M0 179 aa14.36□□□□□ -0.11
LIG1-216ENST00000598938 CD300LFQ8TDQ1 290 aa14.36□□□□□ -0.11
LIG1-216ENST00000598938 WFDC12Q8WWY7 111 aa14.36□□□□□ -0.11
LIG1-216ENST00000598938 CCDC32Q9BV29 185 aa14.36□□□□□ -0.11
LIG1-216ENST00000598938 LINC01548A6NM66 108 aa14.35□□□□□ -0.11
LIG1-216ENST00000598938 CTSDP07339 412 aaPredicted RBP14.35□□□□□ -0.11
LIG1-216ENST00000598938 VSIG10L2P0DP72 767 aa14.35□□□□□ -0.11
LIG1-216ENST00000598938 PI3P19957 117 aa14.35□□□□□ -0.11
LIG1-216ENST00000598938 F2RP25116 425 aa14.35□□□□□ -0.11
LIG1-216ENST00000598938 INPP1P49441 399 aa14.35□□□□□ -0.11
LIG1-216ENST00000598938 UBE2KP61086 200 aa14.35□□□□□ -0.11
LIG1-216ENST00000598938 PLGLAQ15195 96 aa14.35□□□□□ -0.11
LIG1-216ENST00000598938 POC5Q8NA72 575 aa14.35□□□□□ -0.11
LIG1-216ENST00000598938 WIPF2Q8TF74 440 aaPredicted RBP14.35□□□□□ -0.11
LIG1-216ENST00000598938 WDR12Q9GZL7 423 aaKnown RBP14.35□□□□□ -0.11
LIG1-216ENST00000598938 TPSG1Q9NRR2 321 aa14.35□□□□□ -0.11
LIG1-216ENST00000598938 FAM212BQ9NTI7 297 aaPredicted RBP14.35□□□□□ -0.11
LIG1-216ENST00000598938 GPR132Q9UNW8 380 aa14.35□□□□□ -0.11
LIG1-216ENST00000598938 IGHV7-81A0A0B4J1V7 117 aa14.34□□□□□ -0.11
LIG1-216ENST00000598938 FCN1O00602 326 aa14.34□□□□□ -0.11
LIG1-216ENST00000598938 MPPED1O15442 326 aa14.34□□□□□ -0.11
LIG1-216ENST00000598938 HPRT1P00492 218 aa14.34□□□□□ -0.11
LIG1-216ENST00000598938 CD40LGP29965 261 aa14.34□□□□□ -0.11
LIG1-216ENST00000598938 PIGPP57054 158 aa14.34□□□□□ -0.11
LIG1-216ENST00000598938 KRTAP10-3P60369 221 aa14.34□□□□□ -0.11
LIG1-216ENST00000598938 VMA21Q3ZAQ7 101 aa14.34□□□□□ -0.11
LIG1-216ENST00000598938 PPP1R27Q86WC6 154 aa14.34□□□□□ -0.11
LIG1-216ENST00000598938 KLHDC1Q8N7A1 406 aa14.34□□□□□ -0.11
LIG1-216ENST00000598938 TEX45Q8NA69 505 aa14.34□□□□□ -0.11
LIG1-216ENST00000598938 RTBDNQ9BSG5 229 aaPredicted RBP14.34□□□□□ -0.11
LIG1-216ENST00000598938 PLEKHA2Q9HB19 425 aa14.34□□□□□ -0.11
LIG1-216ENST00000598938 NAP1L6A6NFF2 107 aa14.33□□□□□ -0.12
LIG1-216ENST00000598938 HRASP01112 189 aa14.33□□□□□ -0.12
LIG1-216ENST00000598938 SAA1P0DJI8 122 aaPredicted RBP14.33□□□□□ -0.12
LIG1-216ENST00000598938 ZNF846Q147U1 533 aa14.33□□□□□ -0.12
LIG1-216ENST00000598938 ZNF585BQ52M93 769 aa14.33□□□□□ -0.12
LIG1-216ENST00000598938 FOXRED2Q8IWF2 684 aa14.33□□□□□ -0.12
LIG1-216ENST00000598938 CCDC71LQ8N9Z2 235 aa14.33□□□□□ -0.12
LIG1-216ENST00000598938 C5orf66Q9H5L9 145 aa14.33□□□□□ -0.12
LIG1-216ENST00000598938 COMMD9Q9P000 198 aa14.33□□□□□ -0.12
LIG1-216ENST00000598938 ZNF580Q9UK33 172 aa14.33□□□□□ -0.12
LIG1-216ENST00000598938 C14orf166Q9Y224 244 aaKnown RBP14.33□□□□□ -0.12
LIG1-216ENST00000598938 PRKDCP78527 4128 aaKnown RBP14.33□□□□□ -0.12
LIG1-216ENST00000598938 AP4M1O00189 453 aa14.32□□□□□ -0.12
LIG1-216ENST00000598938 S1PR2O95136 353 aa14.32□□□□□ -0.12
LIG1-216ENST00000598938 CA2P00918 260 aa14.32□□□□□ -0.12
LIG1-216ENST00000598938 IGF1P05019 195 aa14.32□□□□□ -0.12
LIG1-216ENST00000598938 TAS2R31P59538 309 aa14.32□□□□□ -0.12
LIG1-216ENST00000598938 CX3CL1P78423 397 aa14.32□□□□□ -0.12
LIG1-216ENST00000598938 POU2AF1Q16633 256 aa14.32□□□□□ -0.12
LIG1-216ENST00000598938 MRGPRG-AS1Q2M3A8 158 aa14.32□□□□□ -0.12
LIG1-216ENST00000598938 PUSL1Q8N0Z8 303 aaKnown RBP14.32□□□□□ -0.12
LIG1-216ENST00000598938 RHOVQ96L33 236 aa14.32□□□□□ -0.12
LIG1-216ENST00000598938 NOL4LQ96MY1 436 aaPredicted RBP14.32□□□□□ -0.12
LIG1-216ENST00000598938 SCGB3A2Q96PL1 93 aa14.32□□□□□ -0.12
LIG1-216ENST00000598938 CLCC1Q96S66 551 aa14.32□□□□□ -0.12
LIG1-216ENST00000598938 C7orf50Q9BRJ6 194 aaKnown RBP14.32□□□□□ -0.12
LIG1-216ENST00000598938 OR51J1Q9H342 316 aa14.32□□□□□ -0.12
LIG1-216ENST00000598938 COPZ2Q9P299 210 aa14.32□□□□□ -0.12
LIG1-216ENST00000598938 VSIG4Q9Y279 399 aa14.32□□□□□ -0.12
LIG1-216ENST00000598938 WNK1Q9H4A3 2382 aa14.31□□□□□ -0.12
LIG1-216ENST00000598938 H0Y980 276 aa14.31□□□□□ -0.12
LIG1-216ENST00000598938 NQO2P16083 231 aa14.31□□□□□ -0.12
LIG1-216ENST00000598938 LPAR6P43657 344 aa14.31□□□□□ -0.12
LIG1-216ENST00000598938 SSBP2P81877 361 aaPredicted RBP14.31□□□□□ -0.12
LIG1-216ENST00000598938 NDPQ00604 133 aa14.31□□□□□ -0.12
LIG1-216ENST00000598938 PJVKQ0ZLH3 352 aa14.31□□□□□ -0.12
LIG1-216ENST00000598938 ZNF562Q6V9R5 426 aa14.31□□□□□ -0.12
LIG1-216ENST00000598938 VKORC1L1Q8N0U8 176 aa14.31□□□□□ -0.12
LIG1-216ENST00000598938 STPG2Q8N412 459 aa14.31□□□□□ -0.12
LIG1-216ENST00000598938 CHPT1Q8WUD6 406 aa14.31□□□□□ -0.12
LIG1-216ENST00000598938 SLC25A21Q9BQT8 299 aaPredicted RBP14.31□□□□□ -0.12
LIG1-216ENST00000598938 AIFM2Q9BRQ8 373 aa14.31□□□□□ -0.12
LIG1-216ENST00000598938 LINC00527Q9UJ94 153 aa14.31□□□□□ -0.12
LIG1-216ENST00000598938 LINC00854A0A1B0GVQ3 168 aa14.3□□□□□ -0.12
LIG1-216ENST00000598938 CENPXA8MT69 81 aa14.3□□□□□ -0.12
LIG1-216ENST00000598938 ATP6V0E1O15342 81 aa14.3□□□□□ -0.12
LIG1-216ENST00000598938 PLA2G10O15496 165 aa14.3□□□□□ -0.12
LIG1-216ENST00000598938 OR2A4O95047 310 aa14.3□□□□□ -0.12
LIG1-216ENST00000598938 CRIP2P52943 208 aaPredicted RBP14.3□□□□□ -0.12
LIG1-216ENST00000598938 PRSS8Q16651 343 aa14.3□□□□□ -0.12
LIG1-216ENST00000598938 VSTM2AQ8TAG5 236 aa14.3□□□□□ -0.12
LIG1-216ENST00000598938 TMEM167AQ8TBQ9 72 aa14.3□□□□□ -0.12
LIG1-216ENST00000598938 OR2A7Q96R45 310 aa14.3□□□□□ -0.12
LIG1-216ENST00000598938 TP53RKQ96S44 253 aa14.3□□□□□ -0.12
LIG1-216ENST00000598938 CITED1Q99966 193 aa14.3□□□□□ -0.12
LIG1-216ENST00000598938 PARP11Q9NR21 331 aa14.3□□□□□ -0.12
LIG1-216ENST00000598938 C3orf85A0A1B0GTC6 90 aa14.29□□□□□ -0.12
LIG1-216ENST00000598938 CRYM-AS1A6NIL9 109 aa14.29□□□□□ -0.12
LIG1-216ENST00000598938 ARPC1BO15143 372 aaKnown RBP14.29□□□□□ -0.12
LIG1-216ENST00000598938 B3GALNT1O75752 331 aa14.29□□□□□ -0.12
LIG1-216ENST00000598938 KBTBD11O94819 623 aa14.29□□□□□ -0.12
LIG1-216ENST00000598938 EGR2P11161 476 aaPredicted RBP14.29□□□□□ -0.12
LIG1-216ENST00000598938 BTCP35070 178 aa14.29□□□□□ -0.12
LIG1-216ENST00000598938 CCR6P51684 374 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms