RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 CD5LO43866 347 aa12.29□□□□□ -0.44
TRIM28-209ENST00000597423 RBMXL2O75526 392 aaKnown RBP12.29□□□□□ -0.44
TRIM28-209ENST00000597423 IGKV1-16P04430 117 aa12.29□□□□□ -0.44
TRIM28-209ENST00000597423 FBP1P09467 338 aa12.29□□□□□ -0.44
TRIM28-209ENST00000597423 PET100P0DJ07 73 aa12.29□□□□□ -0.44
TRIM28-209ENST00000597423 IGHV4-38-2P0DP08 117 aa12.29□□□□□ -0.44
TRIM28-209ENST00000597423 PSMB6P28072 239 aa12.29□□□□□ -0.44
TRIM28-209ENST00000597423 LDLRAD2Q5SZI1 272 aa12.29□□□□□ -0.44
TRIM28-209ENST00000597423 MEGF9Q9H1U4 602 aa12.29□□□□□ -0.44
TRIM28-209ENST00000597423 FKBP11Q9NYL4 201 aa12.29□□□□□ -0.44
TRIM28-209ENST00000597423 PDZD2O15018 2839 aa12.28□□□□□ -0.44
TRIM28-209ENST00000597423 IGHV3-72A0A0B4J1Y9 119 aa12.28□□□□□ -0.44
TRIM28-209ENST00000597423 AVPP01185 164 aa12.28□□□□□ -0.44
TRIM28-209ENST00000597423 HES1Q14469 280 aa12.28□□□□□ -0.44
TRIM28-209ENST00000597423 ZFP69Q49AA0 526 aa12.28□□□□□ -0.44
TRIM28-209ENST00000597423 TEX45Q8NA69 505 aa12.28□□□□□ -0.44
TRIM28-209ENST00000597423 THAP6Q8TBB0 222 aa12.28□□□□□ -0.44
TRIM28-209ENST00000597423 FYTTD1Q96QD9 318 aaKnown RBP12.28□□□□□ -0.44
TRIM28-209ENST00000597423 TMEM140Q9NV12 185 aa12.28□□□□□ -0.44
TRIM28-209ENST00000597423 BET1LQ9NYM9 111 aa12.28□□□□□ -0.44
TRIM28-209ENST00000597423 C1RLQ9NZP8 487 aa12.28□□□□□ -0.44
TRIM28-209ENST00000597423 CACNG5Q9UF02 275 aa12.28□□□□□ -0.44
TRIM28-209ENST00000597423 ITPR2Q14571 2701 aa12.28□□□□□ -0.44
TRIM28-209ENST00000597423 MPTX1A8MV57 137 aa12.27□□□□□ -0.45
TRIM28-209ENST00000597423 FAM90A26D6RGX4 464 aa12.27□□□□□ -0.45
TRIM28-209ENST00000597423 ST8SIA3O43173 380 aa12.27□□□□□ -0.45
TRIM28-209ENST00000597423 MED6O75586 246 aa12.27□□□□□ -0.45
TRIM28-209ENST00000597423 VENTXO95231 258 aa12.27□□□□□ -0.45
TRIM28-209ENST00000597423 SPDEFO95238 335 aa12.27□□□□□ -0.45
TRIM28-209ENST00000597423 HNRNPCP07910 306 aaKnown RBP eCLIP12.27□□□□□ -0.45
TRIM28-209ENST00000597423 P0C879 139 aa12.27□□□□□ -0.45
TRIM28-209ENST00000597423 HNF1AP20823 631 aa12.27□□□□□ -0.45
TRIM28-209ENST00000597423 NKX2-1P43699 371 aaPredicted RBP12.27□□□□□ -0.45
TRIM28-209ENST00000597423 DYNLT3P51808 116 aa12.27□□□□□ -0.45
TRIM28-209ENST00000597423 UBE2KP61086 200 aa12.27□□□□□ -0.45
TRIM28-209ENST00000597423 AANATQ16613 207 aa12.27□□□□□ -0.45
TRIM28-209ENST00000597423 KLF17Q5JT82 389 aaPredicted RBP12.27□□□□□ -0.45
TRIM28-209ENST00000597423 RUSC1-AS1Q66K80 236 aa12.27□□□□□ -0.45
TRIM28-209ENST00000597423 BRD3OSQ6XYD6 125 aa12.27□□□□□ -0.45
TRIM28-209ENST00000597423 SSX9Q7RTT3 188 aa12.27□□□□□ -0.45
TRIM28-209ENST00000597423 OR8H1Q8NGG4 311 aa12.27□□□□□ -0.45
TRIM28-209ENST00000597423 PPP1R1CQ8WVI7 109 aa12.27□□□□□ -0.45
TRIM28-209ENST00000597423 CFHR4Q92496 578 aa12.27□□□□□ -0.45
TRIM28-209ENST00000597423 KIAA1456Q9P272 454 aa12.27□□□□□ -0.45
TRIM28-209ENST00000597423 PRNDQ9UKY0 176 aa12.27□□□□□ -0.45
TRIM28-209ENST00000597423 A0A0U1RQK1 487 aa12.26□□□□□ -0.45
TRIM28-209ENST00000597423 WRBO00258 174 aa12.26□□□□□ -0.45
TRIM28-209ENST00000597423 LY86O95711 162 aa12.26□□□□□ -0.45
TRIM28-209ENST00000597423 IGKV1D-33P01593 117 aa12.26□□□□□ -0.45
TRIM28-209ENST00000597423 IGKV1-33P01594 117 aa12.26□□□□□ -0.45
TRIM28-209ENST00000597423 C1QBP02746 253 aa12.26□□□□□ -0.45
TRIM28-209ENST00000597423 SNRNP70P08621 437 aaKnown RBP12.26□□□□□ -0.45
TRIM28-209ENST00000597423 FOSL1P15407 271 aa12.26□□□□□ -0.45
TRIM28-209ENST00000597423 PVALBP20472 110 aaPredicted RBP12.26□□□□□ -0.45
TRIM28-209ENST00000597423 SCGB2A2Q13296 93 aa12.26□□□□□ -0.45
TRIM28-209ENST00000597423 EBI3Q14213 229 aa12.26□□□□□ -0.45
TRIM28-209ENST00000597423 OR4A47Q6IF82 309 aa12.26□□□□□ -0.45
TRIM28-209ENST00000597423 DYNAPQ8N1N2 210 aa12.26□□□□□ -0.45
TRIM28-209ENST00000597423 AJUBAQ96IF1 538 aa12.26□□□□□ -0.45
TRIM28-209ENST00000597423 EAF1Q96JC9 268 aaPredicted RBP12.26□□□□□ -0.45
TRIM28-209ENST00000597423 HYLS1Q96M11 299 aa12.26□□□□□ -0.45
TRIM28-209ENST00000597423 YAE1D1Q9NRH1 226 aa12.26□□□□□ -0.45
TRIM28-209ENST00000597423 WNK2Q9Y3S1 2297 aa12.26□□□□□ -0.45
TRIM28-209ENST00000597423 SRRM4A7MD48 611 aaKnown RBP12.25□□□□□ -0.45
TRIM28-209ENST00000597423 UPK2O00526 184 aa12.25□□□□□ -0.45
TRIM28-209ENST00000597423 PITX3O75364 302 aa12.25□□□□□ -0.45
TRIM28-209ENST00000597423 SCGB1D2O95969 90 aa12.25□□□□□ -0.45
TRIM28-209ENST00000597423 FGF2P09038 288 aa12.25□□□□□ -0.45
TRIM28-209ENST00000597423 TMEM11P17152 192 aa12.25□□□□□ -0.45
TRIM28-209ENST00000597423 NUP62P37198 522 aaPredicted RBP12.25□□□□□ -0.45
TRIM28-209ENST00000597423 S100A10P60903 97 aa12.25□□□□□ -0.45
TRIM28-209ENST00000597423 ID3Q02535 119 aa12.25□□□□□ -0.45
TRIM28-209ENST00000597423 IL15RAQ13261 267 aa12.25□□□□□ -0.45
TRIM28-209ENST00000597423 SPNS3Q6ZMD2 512 aa12.25□□□□□ -0.45
TRIM28-209ENST00000597423 Q6ZRM9 215 aa12.25□□□□□ -0.45
TRIM28-209ENST00000597423 C9orf139Q6ZV77 190 aa12.25□□□□□ -0.45
TRIM28-209ENST00000597423 FOXRED2Q8IWF2 684 aa12.25□□□□□ -0.45
TRIM28-209ENST00000597423 VKORC1L1Q8N0U8 176 aa12.25□□□□□ -0.45
TRIM28-209ENST00000597423 OR4D5Q8NGN0 318 aa12.25□□□□□ -0.45
TRIM28-209ENST00000597423 C17orf50Q8WW18 174 aa12.25□□□□□ -0.45
TRIM28-209ENST00000597423 CLCC1Q96S66 551 aa12.25□□□□□ -0.45
TRIM28-209ENST00000597423 POMT1Q9Y6A1 747 aa12.25□□□□□ -0.45
TRIM28-209ENST00000597423 MAP1AP78559 2803 aaPredicted RBP12.25□□□□□ -0.45
TRIM28-209ENST00000597423 NBPF19A0A087WUL8 3843 aa12.25□□□□□ -0.45
TRIM28-209ENST00000597423 CCDC168Q8NDH2 2452 aa12.25□□□□□ -0.45
TRIM28-209ENST00000597423 A0A0G2JRQ6 117 aa12.24□□□□□ -0.45
TRIM28-209ENST00000597423 ACTL6BO94805 426 aa12.24□□□□□ -0.45
TRIM28-209ENST00000597423 KBTBD11O94819 623 aa12.24□□□□□ -0.45
TRIM28-209ENST00000597423 MPC2O95563 127 aa12.24□□□□□ -0.45
TRIM28-209ENST00000597423 FSHBP01225 129 aa12.24□□□□□ -0.45
TRIM28-209ENST00000597423 IFNA17P01571 189 aa12.24□□□□□ -0.45
TRIM28-209ENST00000597423 SAA1P0DJI8 122 aaPredicted RBP12.24□□□□□ -0.45
TRIM28-209ENST00000597423 SRP14P37108 136 aaKnown RBP12.24□□□□□ -0.45
TRIM28-209ENST00000597423 HNF4GQ14541 408 aa12.24□□□□□ -0.45
TRIM28-209ENST00000597423 PLGLAQ15195 96 aa12.24□□□□□ -0.45
TRIM28-209ENST00000597423 PSG5Q15238 335 aa12.24□□□□□ -0.45
TRIM28-209ENST00000597423 LRRC75BQ2VPJ9 315 aa12.24□□□□□ -0.45
TRIM28-209ENST00000597423 LRRC37A5PQ49AS3 106 aa12.24□□□□□ -0.45
TRIM28-209ENST00000597423 C11orf87Q6NUJ2 197 aa12.24□□□□□ -0.45
TRIM28-209ENST00000597423 ZNF429Q86V71 674 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms