RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 IGHG4P01861 327 aa9.71□□□□□ -0.86
UPF1-203ENST00000594504 TBPP20226 339 aa9.71□□□□□ -0.86
UPF1-203ENST00000594504 PSMB8P28062 276 aa9.71□□□□□ -0.86
UPF1-203ENST00000594504 TNFSF8P32971 234 aa9.71□□□□□ -0.86
UPF1-203ENST00000594504 LGALS7P47929 136 aa9.71□□□□□ -0.86
UPF1-203ENST00000594504 SSBP1Q04837 148 aaKnown RBP9.71□□□□□ -0.86
UPF1-203ENST00000594504 EIF4EBP1Q13541 118 aaPredicted RBP9.71□□□□□ -0.86
UPF1-203ENST00000594504 KIAA0141Q14154 515 aaPredicted RBP9.71□□□□□ -0.86
UPF1-203ENST00000594504 PLGLAQ15195 96 aa9.71□□□□□ -0.86
UPF1-203ENST00000594504 PSG5Q15238 335 aa9.71□□□□□ -0.86
UPF1-203ENST00000594504 TMEM177Q53S58 311 aa9.71□□□□□ -0.86
UPF1-203ENST00000594504 ZNF66Q6ZN08 573 aa9.71□□□□□ -0.86
UPF1-203ENST00000594504 TMEM17Q86X19 198 aa9.71□□□□□ -0.86
UPF1-203ENST00000594504 OR6F1Q8NGZ6 308 aa9.71□□□□□ -0.86
UPF1-203ENST00000594504 SMIM4Q8WVI0 70 aa9.71□□□□□ -0.86
UPF1-203ENST00000594504 C4orf3Q8WVX3 66 aa9.71□□□□□ -0.86
UPF1-203ENST00000594504 MOB3AQ96BX8 217 aa9.71□□□□□ -0.86
UPF1-203ENST00000594504 DGCR14Q96DF8 476 aaKnown RBP9.71□□□□□ -0.86
UPF1-203ENST00000594504 HARBI1Q96MB7 349 aa9.71□□□□□ -0.86
UPF1-203ENST00000594504 FBXL15Q9H469 300 aa9.71□□□□□ -0.86
UPF1-203ENST00000594504 GNB4Q9HAV0 340 aa9.71□□□□□ -0.86
UPF1-203ENST00000594504 CCL28Q9NRJ3 127 aa9.71□□□□□ -0.86
UPF1-203ENST00000594504 METTL1Q9UBP6 276 aaKnown RBP9.71□□□□□ -0.86
UPF1-203ENST00000594504 ZNF580Q9UK33 172 aa9.71□□□□□ -0.86
UPF1-203ENST00000594504 KMT2CQ8NEZ4 4911 aaKnown RBP9.71□□□□□ -0.86
UPF1-203ENST00000594504 SHOXO15266 292 aa9.7□□□□□ -0.86
UPF1-203ENST00000594504 IGF1P05019 195 aa9.7□□□□□ -0.86
UPF1-203ENST00000594504 PPIFP30405 207 aaKnown RBP9.7□□□□□ -0.86
UPF1-203ENST00000594504 S100A5P33763 92 aa9.7□□□□□ -0.86
UPF1-203ENST00000594504 TSPAN5P62079 268 aa9.7□□□□□ -0.86
UPF1-203ENST00000594504 RNASE10Q5GAN6 216 aaKnown RBP9.7□□□□□ -0.86
UPF1-203ENST00000594504 ASPHD1Q5U4P2 390 aa9.7□□□□□ -0.86
UPF1-203ENST00000594504 MFSD4AQ8N468 514 aa9.7□□□□□ -0.86
UPF1-203ENST00000594504 ZNF491Q8N8L2 437 aa9.7□□□□□ -0.86
UPF1-203ENST00000594504 TCTEX1D2Q8WW35 142 aa9.7□□□□□ -0.86
UPF1-203ENST00000594504 SOSTQ9BQB4 213 aa9.7□□□□□ -0.86
UPF1-203ENST00000594504 TAS2R8Q9NYW2 309 aa9.7□□□□□ -0.86
UPF1-203ENST00000594504 ZMAT5Q9UDW3 170 aaKnown RBP9.7□□□□□ -0.86
UPF1-203ENST00000594504 IGHV7-81A0A0B4J1V7 117 aa9.69□□□□□ -0.86
UPF1-203ENST00000594504 DPPA5A6NC42 116 aa9.69□□□□□ -0.86
UPF1-203ENST00000594504 FABP12A6NFH5 140 aa9.69□□□□□ -0.86
UPF1-203ENST00000594504 M0QYG6 137 aa9.69□□□□□ -0.86
UPF1-203ENST00000594504 ATP6V0E1O15342 81 aa9.69□□□□□ -0.86
UPF1-203ENST00000594504 SLC25A17O43808 307 aa9.69□□□□□ -0.86
UPF1-203ENST00000594504 FCGR3BO75015 233 aa9.69□□□□□ -0.86
UPF1-203ENST00000594504 CRYZL1O95825 349 aa9.69□□□□□ -0.86
UPF1-203ENST00000594504 IGLV2-23P01705 113 aa9.69□□□□□ -0.86
UPF1-203ENST00000594504 CD3DP04234 171 aa9.69□□□□□ -0.86
UPF1-203ENST00000594504 NHLRC4P0CG21 123 aaPredicted RBP9.69□□□□□ -0.86
UPF1-203ENST00000594504 KIR2DS2P43631 304 aa9.69□□□□□ -0.86
UPF1-203ENST00000594504 TAS2R19P59542 299 aa9.69□□□□□ -0.86
UPF1-203ENST00000594504 GNB1P62873 340 aa9.69□□□□□ -0.86
UPF1-203ENST00000594504 RPL30P62888 115 aaKnown RBP9.69□□□□□ -0.86
UPF1-203ENST00000594504 DCTN2Q13561 401 aaKnown RBP9.69□□□□□ -0.86
UPF1-203ENST00000594504 FHL3Q13643 280 aa9.69□□□□□ -0.86
UPF1-203ENST00000594504 ZNF818PQ6ZRF7 136 aa9.69□□□□□ -0.86
UPF1-203ENST00000594504 ARRDC1Q8N5I2 433 aa9.69□□□□□ -0.86
UPF1-203ENST00000594504 TMEM229BQ8NBD8 167 aa9.69□□□□□ -0.86
UPF1-203ENST00000594504 OR1N2Q8NGR9 330 aa9.69□□□□□ -0.86
UPF1-203ENST00000594504 OR4S2Q8NH73 311 aa9.69□□□□□ -0.86
UPF1-203ENST00000594504 OSR1Q8TAX0 266 aaPredicted RBP9.69□□□□□ -0.86
UPF1-203ENST00000594504 FXYD6Q9H0Q3 95 aa9.69□□□□□ -0.86
UPF1-203ENST00000594504 ALX4Q9H161 411 aaPredicted RBP9.69□□□□□ -0.86
UPF1-203ENST00000594504 OR51J1Q9H342 316 aa9.69□□□□□ -0.86
UPF1-203ENST00000594504 I3L521 148 aa9.68□□□□□ -0.86
UPF1-203ENST00000594504 TNFSF12O43508 249 aa9.68□□□□□ -0.86
UPF1-203ENST00000594504 GSTZ1O43708 216 aaPredicted RBP9.68□□□□□ -0.86
UPF1-203ENST00000594504 LY86O95711 162 aa9.68□□□□□ -0.86
UPF1-203ENST00000594504 CD74P04233 296 aa9.68□□□□□ -0.86
UPF1-203ENST00000594504 IFNA6P05013 189 aa9.68□□□□□ -0.86
UPF1-203ENST00000594504 GNRHRP30968 328 aa9.68□□□□□ -0.86
UPF1-203ENST00000594504 CX3CL1P78423 397 aa9.68□□□□□ -0.86
UPF1-203ENST00000594504 CATR1Q13166 79 aa9.68□□□□□ -0.86
UPF1-203ENST00000594504 VMA21Q3ZAQ7 101 aa9.68□□□□□ -0.86
UPF1-203ENST00000594504 OR2B11Q5JQS5 317 aa9.68□□□□□ -0.86
UPF1-203ENST00000594504 LPCAT3Q6P1A2 487 aa9.68□□□□□ -0.86
UPF1-203ENST00000594504 TMEM65Q6PI78 240 aa9.68□□□□□ -0.86
UPF1-203ENST00000594504 PPP1R27Q86WC6 154 aa9.68□□□□□ -0.86
UPF1-203ENST00000594504 CMTM1Q8IZ96 169 aa9.68□□□□□ -0.86
UPF1-203ENST00000594504 MYOZ3Q8TDC0 251 aa9.68□□□□□ -0.86
UPF1-203ENST00000594504 CASTOR1Q8WTX7 329 aa9.68□□□□□ -0.86
UPF1-203ENST00000594504 DCUN1D4Q92564 292 aa9.68□□□□□ -0.86
UPF1-203ENST00000594504 PARP11Q9NR21 331 aa9.68□□□□□ -0.86
UPF1-203ENST00000594504 ZNF256Q9Y2P7 627 aaPredicted RBP9.68□□□□□ -0.86
UPF1-203ENST00000594504 RYR3Q15413 4870 aa9.67□□□□□ -0.86
UPF1-203ENST00000594504 SRRM4A7MD48 611 aaKnown RBP9.67□□□□□ -0.86
UPF1-203ENST00000594504 FCN1O00602 326 aa9.67□□□□□ -0.86
UPF1-203ENST00000594504 RBFOX2O43251 390 aaKnown RBP eCLIP9.67□□□□□ -0.86
UPF1-203ENST00000594504 RAB3DO95716 219 aa9.67□□□□□ -0.86
UPF1-203ENST00000594504 CRYGBP07316 175 aa9.67□□□□□ -0.86
UPF1-203ENST00000594504 RAB9AP51151 201 aa9.67□□□□□ -0.86
UPF1-203ENST00000594504 CRIP2P52943 208 aaPredicted RBP9.67□□□□□ -0.86
UPF1-203ENST00000594504 UCP3P55916 312 aa9.67□□□□□ -0.86
UPF1-203ENST00000594504 UBE2KP61086 200 aa9.67□□□□□ -0.86
UPF1-203ENST00000594504 NDPQ00604 133 aa9.67□□□□□ -0.86
UPF1-203ENST00000594504 STEAP1BQ6NZ63 245 aa9.67□□□□□ -0.86
UPF1-203ENST00000594504 ZNF562Q6V9R5 426 aa9.67□□□□□ -0.86
UPF1-203ENST00000594504 TEX45Q8NA69 505 aa9.67□□□□□ -0.86
UPF1-203ENST00000594504 UBE2E2Q96LR5 201 aa9.67□□□□□ -0.86
UPF1-203ENST00000594504 CLCC1Q96S66 551 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms