RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 RELBQ01201 579 aa8.54□□□□□ -1.04
SS18-217ENST00000580958 EWSR1Q01844 656 aaKnown RBP eCLIP8.54□□□□□ -1.04
SS18-217ENST00000580958 KLRD1Q13241 179 aa8.54□□□□□ -1.04
SS18-217ENST00000580958 HLA-DRB5Q30154 266 aa8.54□□□□□ -1.04
SS18-217ENST00000580958 GPR157Q5UAW9 335 aa8.54□□□□□ -1.04
SS18-217ENST00000580958 CLEC2AQ6UVW9 174 aa8.54□□□□□ -1.04
SS18-217ENST00000580958 TGIF2LXQ8IUE1 241 aa8.54□□□□□ -1.04
SS18-217ENST00000580958 VKORC1L1Q8N0U8 176 aa8.54□□□□□ -1.04
SS18-217ENST00000580958 OR2C3Q8N628 320 aa8.54□□□□□ -1.04
SS18-217ENST00000580958 BEND2Q8NDZ0 799 aa8.54□□□□□ -1.04
SS18-217ENST00000580958 OR13D1Q8NGV5 346 aa8.54□□□□□ -1.04
SS18-217ENST00000580958 QTRT1Q9BXR0 403 aaKnown RBP8.54□□□□□ -1.04
SS18-217ENST00000580958 RBKSQ9H477 322 aa8.54□□□□□ -1.04
SS18-217ENST00000580958 TMEM140Q9NV12 185 aa8.54□□□□□ -1.04
SS18-217ENST00000580958 UBQLN2Q9UHD9 624 aa8.54□□□□□ -1.04
SS18-217ENST00000580958 TRAV3A0A0B4J244 114 aa8.53□□□□□ -1.04
SS18-217ENST00000580958 IGHV2-70DA0A0C4DH43 119 aa8.53□□□□□ -1.04
SS18-217ENST00000580958 FAM90A9PA6NNJ1 464 aa8.53□□□□□ -1.04
SS18-217ENST00000580958 VWC2LB2RUY7 222 aa8.53□□□□□ -1.04
SS18-217ENST00000580958 H3BP45 60 aa8.53□□□□□ -1.04
SS18-217ENST00000580958 H7C2Y5 167 aa8.53□□□□□ -1.04
SS18-217ENST00000580958 RBMXL2O75526 392 aaKnown RBP8.53□□□□□ -1.04
SS18-217ENST00000580958 MED6O75586 246 aa8.53□□□□□ -1.04
SS18-217ENST00000580958 HRASP01112 189 aa8.53□□□□□ -1.04
SS18-217ENST00000580958 RRASP10301 218 aa8.53□□□□□ -1.04
SS18-217ENST00000580958 CAV2P51636 162 aa8.53□□□□□ -1.04
SS18-217ENST00000580958 RPL23AP62750 156 aaKnown RBP8.53□□□□□ -1.04
SS18-217ENST00000580958 NHLH2Q02577 135 aa8.53□□□□□ -1.04
SS18-217ENST00000580958 PAX2Q02962 417 aa8.53□□□□□ -1.04
SS18-217ENST00000580958 TNFRSF9Q07011 255 aa8.53□□□□□ -1.04
SS18-217ENST00000580958 POU2AF1Q16633 256 aa8.53□□□□□ -1.04
SS18-217ENST00000580958 DHRS7BQ6IAN0 325 aaPredicted RBP8.53□□□□□ -1.04
SS18-217ENST00000580958 HCP5Q6MZN7 132 aa8.53□□□□□ -1.04
SS18-217ENST00000580958 ALKAL2Q6UX46 152 aa8.53□□□□□ -1.04
SS18-217ENST00000580958 KIR3DL3Q8N743 410 aa8.53□□□□□ -1.04
SS18-217ENST00000580958 OR5AN1Q8NGI8 311 aa8.53□□□□□ -1.04
SS18-217ENST00000580958 OR4P4Q8NGL7 312 aa8.53□□□□□ -1.04
SS18-217ENST00000580958 OR4A16Q8NH70 328 aa8.53□□□□□ -1.04
SS18-217ENST00000580958 RAB40CQ96S21 281 aa8.53□□□□□ -1.04
SS18-217ENST00000580958 SLC25A31Q9H0C2 315 aa8.53□□□□□ -1.04
SS18-217ENST00000580958 WFDC1Q9HC57 220 aa8.53□□□□□ -1.04
SS18-217ENST00000580958 LYRM2Q9NU23 88 aaPredicted RBP8.53□□□□□ -1.04
SS18-217ENST00000580958 HSPB7Q9UBY9 170 aa8.53□□□□□ -1.04
SS18-217ENST00000580958 AMMECR1Q9Y4X0 333 aaPredicted RBP8.53□□□□□ -1.04
SS18-217ENST00000580958 PLXNB1O43157 2135 aa8.53□□□□□ -1.04
SS18-217ENST00000580958 NBPF19A0A087WUL8 3843 aa8.52□□□□□ -1.04
SS18-217ENST00000580958 IGHV4-30-2A0A087WSY4 118 aa8.52□□□□□ -1.05
SS18-217ENST00000580958 IGHV4-61A0A0C4DH41 118 aa8.52□□□□□ -1.05
SS18-217ENST00000580958 FAM157AC9JC47 383 aa8.52□□□□□ -1.05
SS18-217ENST00000580958 BUB1B-PAK6H3BSN5 160 aa8.52□□□□□ -1.05
SS18-217ENST00000580958 NDUFS8O00217 210 aa8.52□□□□□ -1.05
SS18-217ENST00000580958 TAAR5O14804 337 aa8.52□□□□□ -1.05
SS18-217ENST00000580958 SHOXO15266 292 aa8.52□□□□□ -1.05
SS18-217ENST00000580958 FOXH1O75593 365 aa8.52□□□□□ -1.05
SS18-217ENST00000580958 IGKV1-16P04430 117 aa8.52□□□□□ -1.05
SS18-217ENST00000580958 ARG1P05089 322 aa8.52□□□□□ -1.05
SS18-217ENST00000580958 PAX1P15863 534 aa8.52□□□□□ -1.05
SS18-217ENST00000580958 PRTN3P24158 256 aa8.52□□□□□ -1.05
SS18-217ENST00000580958 ARHGDIBP52566 201 aa8.52□□□□□ -1.05
SS18-217ENST00000580958 KRTAP10-9P60411 292 aa8.52□□□□□ -1.05
SS18-217ENST00000580958 UBE2KP61086 200 aa8.52□□□□□ -1.05
SS18-217ENST00000580958 TAGLNQ01995 201 aaKnown RBP8.52□□□□□ -1.05
SS18-217ENST00000580958 TMEM267Q0VDI3 215 aaPredicted RBP8.52□□□□□ -1.05
SS18-217ENST00000580958 TMEM177Q53S58 311 aa8.52□□□□□ -1.05
SS18-217ENST00000580958 SPINK9Q5DT21 86 aa8.52□□□□□ -1.05
SS18-217ENST00000580958 RPL7L1Q6DKI1 246 aaKnown RBP8.52□□□□□ -1.05
SS18-217ENST00000580958 OR4A47Q6IF82 309 aa8.52□□□□□ -1.05
SS18-217ENST00000580958 C1orf122Q6ZSJ8 110 aa8.52□□□□□ -1.05
SS18-217ENST00000580958 VMO1Q7Z5L0 202 aa8.52□□□□□ -1.05
SS18-217ENST00000580958 OR8H3Q8N146 312 aa8.52□□□□□ -1.05
SS18-217ENST00000580958 TMEM252Q8N6L7 170 aa8.52□□□□□ -1.05
SS18-217ENST00000580958 STOML3Q8TAV4 291 aa8.52□□□□□ -1.05
SS18-217ENST00000580958 SCARB1Q8WTV0 552 aa8.52□□□□□ -1.05
SS18-217ENST00000580958 PCNPQ8WW12 178 aaKnown RBP8.52□□□□□ -1.05
SS18-217ENST00000580958 SMIM8Q96KF7 97 aa8.52□□□□□ -1.05
SS18-217ENST00000580958 RHOVQ96L33 236 aa8.52□□□□□ -1.05
SS18-217ENST00000580958 PCGF1Q9BSM1 259 aa8.52□□□□□ -1.05
SS18-217ENST00000580958 SIRPDQ9H106 197 aa8.52□□□□□ -1.05
SS18-217ENST00000580958 MMP26Q9NRE1 261 aa8.52□□□□□ -1.05
SS18-217ENST00000580958 PSENENQ9NZ42 101 aa8.52□□□□□ -1.05
SS18-217ENST00000580958 WASHC3Q9Y3C0 194 aa8.52□□□□□ -1.05
SS18-217ENST00000580958 KPTNQ9Y664 436 aa8.52□□□□□ -1.05
SS18-217ENST00000580958 CRYBG3Q68DQ2 2970 aa8.52□□□□□ -1.05
SS18-217ENST00000580958 TENM4Q6N022 2769 aa8.51□□□□□ -1.05
SS18-217ENST00000580958 IGHV3-72A0A0B4J1Y9 119 aa8.51□□□□□ -1.05
SS18-217ENST00000580958 A0A1W2PRD5 423 aa8.51□□□□□ -1.05
SS18-217ENST00000580958 A0A1W2PRF3 423 aa8.51□□□□□ -1.05
SS18-217ENST00000580958 A0A1W2PRM7 423 aa8.51□□□□□ -1.05
SS18-217ENST00000580958 SRRM4A7MD48 611 aaKnown RBP8.51□□□□□ -1.05
SS18-217ENST00000580958 CEBPZOSA8MTT3 80 aa8.51□□□□□ -1.05
SS18-217ENST00000580958 TXNL1O43396 289 aa8.51□□□□□ -1.05
SS18-217ENST00000580958 CST7O76096 145 aa8.51□□□□□ -1.05
SS18-217ENST00000580958 GAPDHP04406 335 aaKnown RBP8.51□□□□□ -1.05
SS18-217ENST00000580958 TPT1P13693 172 aaKnown RBP8.51□□□□□ -1.05
SS18-217ENST00000580958 HOXB4P17483 251 aaPredicted RBP8.51□□□□□ -1.05
SS18-217ENST00000580958 DYNLT3P51808 116 aa8.51□□□□□ -1.05
SS18-217ENST00000580958 TPTE2P1Q5T6R2 138 aa8.51□□□□□ -1.05
SS18-217ENST00000580958 MOB3BQ86TA1 216 aa8.51□□□□□ -1.05
SS18-217ENST00000580958 PDPNQ86YL7 162 aa8.51□□□□□ -1.05
SS18-217ENST00000580958 PDZD9Q8IXQ8 264 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms