RNA–Protein interactions for RNA: ENST00000574408.5

USP43-205, Transcript of ubiquitin specific peptidase 43, humanhuman

TSL 1 (best)

Gene USP43, Length 3,425 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP43-205ENST00000574408 CLN8Q9UBY8 286 aa8.66□□□□□ -1.02
USP43-205ENST00000574408 RAI1Q7Z5J4 1906 aaPredicted RBP8.65□□□□□ -1.02
USP43-205ENST00000574408 DSCAML1Q8TD84 2053 aa8.65□□□□□ -1.02
USP43-205ENST00000574408 NKX6-3A6NJ46 265 aa8.65□□□□□ -1.02
USP43-205ENST00000574408 SHISA9B4DS77 424 aa8.65□□□□□ -1.02
USP43-205ENST00000574408 E7EQL1 145 aa8.65□□□□□ -1.02
USP43-205ENST00000574408 IFNA5P01569 189 aa8.65□□□□□ -1.02
USP43-205ENST00000574408 ARL16Q0P5N6 197 aa8.65□□□□□ -1.02
USP43-205ENST00000574408 RHEBQ15382 184 aa8.65□□□□□ -1.02
USP43-205ENST00000574408 LYPD6BQ8NI32 183 aa8.65□□□□□ -1.02
USP43-205ENST00000574408 CCL17Q92583 94 aa8.65□□□□□ -1.02
USP43-205ENST00000574408 GNPNAT1Q96EK6 184 aaPredicted RBP8.65□□□□□ -1.02
USP43-205ENST00000574408 ABHD14AQ9BUJ0 271 aa8.65□□□□□ -1.02
USP43-205ENST00000574408 SEC11CQ9BY50 192 aa8.65□□□□□ -1.02
USP43-205ENST00000574408 NCOR1P1Q9H4R4 102 aa8.65□□□□□ -1.02
USP43-205ENST00000574408 RAB9BQ9NP90 201 aa8.65□□□□□ -1.02
USP43-205ENST00000574408 GFOD1Q9NXC2 390 aa8.65□□□□□ -1.02
USP43-205ENST00000574408 LAMP3Q9UQV4 416 aa8.65□□□□□ -1.02
USP43-205ENST00000574408 YLPM1P49750 1951 aaKnown RBP8.65□□□□□ -1.02
USP43-205ENST00000574408 MARCH11A6NNE9 402 aa8.65□□□□□ -1.03
USP43-205ENST00000574408 CCL21O00585 134 aa8.65□□□□□ -1.03
USP43-205ENST00000574408 TCF23Q7RTU1 214 aa8.65□□□□□ -1.03
USP43-205ENST00000574408 LINC01560Q8TB33 94 aa8.65□□□□□ -1.03
USP43-205ENST00000574408 R3HDM4Q96D70 268 aa8.65□□□□□ -1.03
USP43-205ENST00000574408 HSPB7Q9UBY9 170 aa8.65□□□□□ -1.03
USP43-205ENST00000574408 RAB29O14966 203 aa8.64□□□□□ -1.03
USP43-205ENST00000574408 RAB11AP62491 216 aa8.64□□□□□ -1.03
USP43-205ENST00000574408 LCN15Q6UWW0 184 aa8.64□□□□□ -1.03
USP43-205ENST00000574408 HAPLN4Q86UW8 402 aa8.64□□□□□ -1.03
USP43-205ENST00000574408 THNSL2Q86YJ6 484 aa8.64□□□□□ -1.03
USP43-205ENST00000574408 DMRTC2Q8IXT2 367 aaPredicted RBP8.64□□□□□ -1.03
USP43-205ENST00000574408 RNASE6Q93091 150 aaKnown RBP8.64□□□□□ -1.03
USP43-205ENST00000574408 TANC2Q9HCD6 1990 aa8.64□□□□□ -1.03
USP43-205ENST00000574408 ARFGEF3Q5TH69 2177 aa8.64□□□□□ -1.03
USP43-205ENST00000574408 TRAV38-1A0A0B4J264 116 aa8.64□□□□□ -1.03
USP43-205ENST00000574408 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.64□□□□□ -1.03
USP43-205ENST00000574408 TAS2R30P59541 319 aa8.64□□□□□ -1.03
USP43-205ENST00000574408 SSX2Q16385 188 aa8.64□□□□□ -1.03
USP43-205ENST00000574408 SPINK9Q5DT21 86 aa8.64□□□□□ -1.03
USP43-205ENST00000574408 ATG101Q9BSB4 218 aa8.64□□□□□ -1.03
USP43-205ENST00000574408 AKAP6Q13023 2319 aa8.64□□□□□ -1.03
USP43-205ENST00000574408 SPTBN1Q01082 2364 aaKnown RBP8.64□□□□□ -1.03
USP43-205ENST00000574408 COLCA2A8K830 154 aa8.64□□□□□ -1.03
USP43-205ENST00000574408 PPP1R2P9O14990 202 aa8.64□□□□□ -1.03
USP43-205ENST00000574408 S100A8P05109 93 aa8.64□□□□□ -1.03
USP43-205ENST00000574408 CD5P06127 495 aa8.64□□□□□ -1.03
USP43-205ENST00000574408 CD3EP07766 207 aa8.64□□□□□ -1.03
USP43-205ENST00000574408 SNCAP37840 140 aa8.64□□□□□ -1.03
USP43-205ENST00000574408 GNG10P50151 68 aa8.64□□□□□ -1.03
USP43-205ENST00000574408 DVL1P1P54792 670 aaPredicted RBP8.64□□□□□ -1.03
USP43-205ENST00000574408 HBG1P69891 147 aa8.64□□□□□ -1.03
USP43-205ENST00000574408 HBG2P69892 147 aa8.64□□□□□ -1.03
USP43-205ENST00000574408 CT45A1Q5HYN5 189 aa8.64□□□□□ -1.03
USP43-205ENST00000574408 OR8G2PQ6IF36 304 aa8.64□□□□□ -1.03
USP43-205ENST00000574408 C1orf87Q8N0U7 546 aa8.64□□□□□ -1.03
USP43-205ENST00000574408 CT45A3Q8NHU0 189 aa8.64□□□□□ -1.03
USP43-205ENST00000574408 SMG1Q96Q15 3661 aaKnown RBP8.64□□□□□ -1.03
USP43-205ENST00000574408 PPIAL4EA0A075B759 164 aa8.63□□□□□ -1.03
USP43-205ENST00000574408 PPIAL4DF5H284 164 aa8.63□□□□□ -1.03
USP43-205ENST00000574408 ZZEF1O43149 2961 aa8.63□□□□□ -1.03
USP43-205ENST00000574408 MT-ND4LP03901 98 aa8.63□□□□□ -1.03
USP43-205ENST00000574408 PPIAL4FP0DN26 164 aa8.63□□□□□ -1.03
USP43-205ENST00000574408 GRNP28799 593 aaKnown RBP8.63□□□□□ -1.03
USP43-205ENST00000574408 RAB7AP51149 207 aa8.63□□□□□ -1.03
USP43-205ENST00000574408 PRAMEF5Q5TYX0 476 aa8.63□□□□□ -1.03
USP43-205ENST00000574408 DHRS7BQ6IAN0 325 aaPredicted RBP8.63□□□□□ -1.03
USP43-205ENST00000574408 ZNF525Q8N782 197 aa8.63□□□□□ -1.03
USP43-205ENST00000574408 SCGB1C1Q8TD33 95 aa8.63□□□□□ -1.03
USP43-205ENST00000574408 ZDHHC16Q969W1 377 aa8.63□□□□□ -1.03
USP43-205ENST00000574408 GGACTQ9BVM4 153 aa8.63□□□□□ -1.03
USP43-205ENST00000574408 GAR1Q9NY12 217 aaKnown RBP8.63□□□□□ -1.03
USP43-205ENST00000574408 GNG13Q9P2W3 67 aa8.63□□□□□ -1.03
USP43-205ENST00000574408 SLC25A10Q9UBX3 287 aaPredicted RBP8.63□□□□□ -1.03
USP43-205ENST00000574408 PPIAL4AQ9Y536 164 aa8.63□□□□□ -1.03
USP43-205ENST00000574408 HCFC1P51610 2035 aa8.63□□□□□ -1.03
USP43-205ENST00000574408 ZNF729A6NN14 1252 aaPredicted RBP8.63□□□□□ -1.03
USP43-205ENST00000574408 CEBPZOSA8MTT3 80 aa8.63□□□□□ -1.03
USP43-205ENST00000574408 TMEM178BH3BS89 294 aa8.63□□□□□ -1.03
USP43-205ENST00000574408 AP4M1O00189 453 aa8.63□□□□□ -1.03
USP43-205ENST00000574408 ZG16O60844 167 aa8.63□□□□□ -1.03
USP43-205ENST00000574408 MMP23AO75900 390 aa8.63□□□□□ -1.03
USP43-205ENST00000574408 C1orf229Q6ZS94 237 aaPredicted RBP8.63□□□□□ -1.03
USP43-205ENST00000574408 LYG1Q8N1E2 194 aa8.63□□□□□ -1.03
USP43-205ENST00000574408 COMMD1Q8N668 190 aa8.63□□□□□ -1.03
USP43-205ENST00000574408 ST6GALNAC3Q8NDV1 305 aa8.63□□□□□ -1.03
USP43-205ENST00000574408 DTD1Q8TEA8 209 aa8.63□□□□□ -1.03
USP43-205ENST00000574408 FAM216AQ8WUB2 273 aa8.63□□□□□ -1.03
USP43-205ENST00000574408 S1PR3Q99500 378 aa8.63□□□□□ -1.03
USP43-205ENST00000574408 RSG1Q9BU20 258 aa8.63□□□□□ -1.03
USP43-205ENST00000574408 TMEM106BQ9NUM4 274 aa8.63□□□□□ -1.03
USP43-205ENST00000574408 IDI2-AS1Q9NZ38 188 aa8.63□□□□□ -1.03
USP43-205ENST00000574408 CARHSP1Q9Y2V2 147 aaKnown RBP8.63□□□□□ -1.03
USP43-205ENST00000574408 SAA2-SAA4A0A096LPE2 208 aa8.63□□□□□ -1.03
USP43-205ENST00000574408 hADV38S2A0JD32 116 aa8.63□□□□□ -1.03
USP43-205ENST00000574408 HPRT1P00492 218 aa8.63□□□□□ -1.03
USP43-205ENST00000574408 PLAUP00749 431 aa8.63□□□□□ -1.03
USP43-205ENST00000574408 SAA2P0DJI9 122 aaPredicted RBP8.63□□□□□ -1.03
USP43-205ENST00000574408 CHRNB4P30926 498 aa8.63□□□□□ -1.03
USP43-205ENST00000574408 FGF8P55075 233 aaPredicted RBP8.63□□□□□ -1.03
USP43-205ENST00000574408 SLC38A11Q08AI6 406 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms