RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 OR13F1Q8NGS4 319 aa6.31□□□□□ -1.4
VPS53-214ENST00000572607 OR4S2Q8NH73 311 aa6.31□□□□□ -1.4
VPS53-214ENST00000572607 SECTM1Q8WVN6 248 aa6.31□□□□□ -1.4
VPS53-214ENST00000572607 ACOT12Q8WYK0 555 aa6.31□□□□□ -1.4
VPS53-214ENST00000572607 BORCS5Q969J3 196 aa6.31□□□□□ -1.4
VPS53-214ENST00000572607 TMEM68Q96MH6 324 aa6.31□□□□□ -1.4
VPS53-214ENST00000572607 OR5B12Q96R08 314 aa6.31□□□□□ -1.4
VPS53-214ENST00000572607 MRPS26Q9BYN8 205 aaKnown RBP6.31□□□□□ -1.4
VPS53-214ENST00000572607 KLK15Q9H2R5 256 aa6.31□□□□□ -1.4
VPS53-214ENST00000572607 GNB4Q9HAV0 340 aa6.31□□□□□ -1.4
VPS53-214ENST00000572607 COMMD3Q9UBI1 195 aa6.31□□□□□ -1.4
VPS53-214ENST00000572607 FBXO7Q9Y3I1 522 aa6.31□□□□□ -1.4
VPS53-214ENST00000572607 NUBP2Q9Y5Y2 271 aa6.31□□□□□ -1.4
VPS53-214ENST00000572607 DYNC2H1Q8NCM8 4307 aaKnown RBP6.3□□□□□ -1.4
VPS53-214ENST00000572607 MEIS3P1A6NDR6 274 aa6.3□□□□□ -1.4
VPS53-214ENST00000572607 TRIM64CA6NLI5 447 aa6.3□□□□□ -1.4
VPS53-214ENST00000572607 LINC00473A8K010 186 aa6.3□□□□□ -1.4
VPS53-214ENST00000572607 SEC14L6B5MCN3 397 aa6.3□□□□□ -1.4
VPS53-214ENST00000572607 H3BUA1 57 aa6.3□□□□□ -1.4
VPS53-214ENST00000572607 PPYP01298 95 aa6.3□□□□□ -1.4
VPS53-214ENST00000572607 IGLV2-23P01705 113 aa6.3□□□□□ -1.4
VPS53-214ENST00000572607 TRGV3P03979 118 aa6.3□□□□□ -1.4
VPS53-214ENST00000572607 FCER2P06734 321 aa6.3□□□□□ -1.4
VPS53-214ENST00000572607 AADACP22760 399 aa6.3□□□□□ -1.4
VPS53-214ENST00000572607 HOXD3P31249 432 aaPredicted RBP6.3□□□□□ -1.4
VPS53-214ENST00000572607 PRSS3P35030 304 aa6.3□□□□□ -1.4
VPS53-214ENST00000572607 KIR2DS2P43631 304 aa6.3□□□□□ -1.4
VPS53-214ENST00000572607 RORCP51449 518 aa6.3□□□□□ -1.4
VPS53-214ENST00000572607 TAS2R46P59540 309 aa6.3□□□□□ -1.4
VPS53-214ENST00000572607 FXYD4P59646 89 aa6.3□□□□□ -1.4
VPS53-214ENST00000572607 HERV-K104P61576 105 aa6.3□□□□□ -1.4
VPS53-214ENST00000572607 CATR1Q13166 79 aa6.3□□□□□ -1.4
VPS53-214ENST00000572607 DCTN2Q13561 401 aaKnown RBP6.3□□□□□ -1.4
VPS53-214ENST00000572607 CDK10Q15131 360 aa6.3□□□□□ -1.4
VPS53-214ENST00000572607 MSMO1Q15800 293 aa6.3□□□□□ -1.4
VPS53-214ENST00000572607 TNXAQ16473 311 aa6.3□□□□□ -1.4
VPS53-214ENST00000572607 OR2B11Q5JQS5 317 aa6.3□□□□□ -1.4
VPS53-214ENST00000572607 MZT2AQ6P582 158 aa6.3□□□□□ -1.4
VPS53-214ENST00000572607 GPR141Q7Z602 305 aa6.3□□□□□ -1.4
VPS53-214ENST00000572607 WFDC3Q8IUB2 231 aa6.3□□□□□ -1.4
VPS53-214ENST00000572607 GVQW1Q8N7I0 195 aa6.3□□□□□ -1.4
VPS53-214ENST00000572607 TEX45Q8NA69 505 aa6.3□□□□□ -1.4
VPS53-214ENST00000572607 POC5Q8NA72 575 aa6.3□□□□□ -1.4
VPS53-214ENST00000572607 OR5AP2Q8NGF4 316 aa6.3□□□□□ -1.4
VPS53-214ENST00000572607 VSTM2AQ8TAG5 236 aa6.3□□□□□ -1.4
VPS53-214ENST00000572607 MYOZ3Q8TDC0 251 aa6.3□□□□□ -1.4
VPS53-214ENST00000572607 DDB2Q92466 427 aa6.3□□□□□ -1.4
VPS53-214ENST00000572607 MISP3Q96FF7 219 aa6.3□□□□□ -1.4
VPS53-214ENST00000572607 C5orf30Q96GV9 206 aa6.3□□□□□ -1.4
VPS53-214ENST00000572607 CMTM3Q96MX0 182 aa6.3□□□□□ -1.4
VPS53-214ENST00000572607 MS4A10Q96PG2 267 aa6.3□□□□□ -1.4
VPS53-214ENST00000572607 AIFM2Q9BRQ8 373 aa6.3□□□□□ -1.4
VPS53-214ENST00000572607 TAS2R8Q9NYW2 309 aa6.3□□□□□ -1.4
VPS53-214ENST00000572607 IGKV1D-13A0A0B4J2D9 117 aa6.29□□□□□ -1.4
VPS53-214ENST00000572607 A0A0G2JLM5 398 aa6.29□□□□□ -1.4
VPS53-214ENST00000572607 C13orf42A0A1B0GVH6 325 aa6.29□□□□□ -1.4
VPS53-214ENST00000572607 FAM25AB3EWG3 89 aa6.29□□□□□ -1.4
VPS53-214ENST00000572607 FAM25CB3EWG5 89 aa6.29□□□□□ -1.4
VPS53-214ENST00000572607 FAM25GB3EWG6 89 aa6.29□□□□□ -1.4
VPS53-214ENST00000572607 LINC01619G3V211 115 aa6.29□□□□□ -1.4
VPS53-214ENST00000572607 ARPC1BO15143 372 aaKnown RBP6.29□□□□□ -1.4
VPS53-214ENST00000572607 TNFSF12O43508 249 aa6.29□□□□□ -1.4
VPS53-214ENST00000572607 SOX15O60248 233 aa6.29□□□□□ -1.4
VPS53-214ENST00000572607 RAMP3O60896 148 aa6.29□□□□□ -1.4
VPS53-214ENST00000572607 HRASP01112 189 aa6.29□□□□□ -1.4
VPS53-214ENST00000572607 IGHV3-11P01762 117 aa6.29□□□□□ -1.4
VPS53-214ENST00000572607 APOA1P02647 267 aa6.29□□□□□ -1.4
VPS53-214ENST00000572607 CRYGBP07316 175 aa6.29□□□□□ -1.4
VPS53-214ENST00000572607 LGALS1P09382 135 aaKnown RBP6.29□□□□□ -1.4
VPS53-214ENST00000572607 IGKV1-13P0DP09 117 aa6.29□□□□□ -1.4
VPS53-214ENST00000572607 EGR2P11161 476 aaPredicted RBP6.29□□□□□ -1.4
VPS53-214ENST00000572607 PTHLHP12272 177 aa6.29□□□□□ -1.4
VPS53-214ENST00000572607 DGCR2P98153 550 aa6.29□□□□□ -1.4
VPS53-214ENST00000572607 RUNX1Q01196 453 aa6.29□□□□□ -1.4
VPS53-214ENST00000572607 FHL3Q13643 280 aa6.29□□□□□ -1.4
VPS53-214ENST00000572607 PRSS8Q16651 343 aa6.29□□□□□ -1.4
VPS53-214ENST00000572607 C19orf54Q5BKX5 351 aa6.29□□□□□ -1.4
VPS53-214ENST00000572607 OVCH2Q7RTZ1 564 aa6.29□□□□□ -1.4
VPS53-214ENST00000572607 TMEM17Q86X19 198 aa6.29□□□□□ -1.4
VPS53-214ENST00000572607 ANKRD13BQ86YJ7 626 aa6.29□□□□□ -1.4
VPS53-214ENST00000572607 MMD2Q8IY49 270 aa6.29□□□□□ -1.4
VPS53-214ENST00000572607 MFSD4AQ8N468 514 aa6.29□□□□□ -1.4
VPS53-214ENST00000572607 OR5T1Q8NG75 326 aa6.29□□□□□ -1.4
VPS53-214ENST00000572607 OR5H2Q8NGV7 314 aa6.29□□□□□ -1.4
VPS53-214ENST00000572607 CASTOR1Q8WTX7 329 aa6.29□□□□□ -1.4
VPS53-214ENST00000572607 SLC5A7Q9GZV3 580 aa6.29□□□□□ -1.4
VPS53-214ENST00000572607 CCL28Q9NRJ3 127 aa6.29□□□□□ -1.4
VPS53-214ENST00000572607 COA4Q9NYJ1 87 aa6.29□□□□□ -1.4
VPS53-214ENST00000572607 EHFQ9NZC4 300 aa6.29□□□□□ -1.4
VPS53-214ENST00000572607 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.29□□□□□ -1.4
VPS53-214ENST00000572607 RYR2Q92736 4967 aa6.29□□□□□ -1.4
VPS53-214ENST00000572607 SACSQ9NZJ4 4579 aa6.28□□□□□ -1.4
VPS53-214ENST00000572607 DPPA5A6NC42 116 aa6.28□□□□□ -1.4
VPS53-214ENST00000572607 MSGN1A6NI15 193 aa6.28□□□□□ -1.4
VPS53-214ENST00000572607 SRRM4A7MD48 611 aaKnown RBP6.28□□□□□ -1.4
VPS53-214ENST00000572607 I3L521 148 aa6.28□□□□□ -1.4
VPS53-214ENST00000572607 OVOL1O14753 267 aa6.28□□□□□ -1.4
VPS53-214ENST00000572607 NOL3O60936 208 aaKnown RBP6.28□□□□□ -1.4
VPS53-214ENST00000572607 OR2A4O95047 310 aa6.28□□□□□ -1.4
VPS53-214ENST00000572607 GABARAPO95166 117 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms