RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 TMSB15BA0A087X1C1 80 aa13.03□□□□□ -0.32
CIITA-204ENST00000570546 CORTO00230 105 aa13.03□□□□□ -0.32
CIITA-204ENST00000570546 CRYBB3P26998 211 aa13.03□□□□□ -0.32
CIITA-204ENST00000570546 SSX8Q7RTT4 187 aa13.03□□□□□ -0.32
CIITA-204ENST00000570546 OR8A1Q8NGG7 326 aa13.03□□□□□ -0.32
CIITA-204ENST00000570546 ACP7Q6ZNF0 438 aa13.03□□□□□ -0.32
CIITA-204ENST00000570546 STPG3Q8N7X2 389 aa13.03□□□□□ -0.32
CIITA-204ENST00000570546 TMEM116Q8NCL8 245 aa13.03□□□□□ -0.32
CIITA-204ENST00000570546 C8orf88P0DMB2 117 aa13.03□□□□□ -0.32
CIITA-204ENST00000570546 ZNF146Q15072 292 aa13.02□□□□□ -0.32
CIITA-204ENST00000570546 SPATA45Q537H7 98 aa13.02□□□□□ -0.32
CIITA-204ENST00000570546 KRTCAP3Q53RY4 240 aa13.02□□□□□ -0.32
CIITA-204ENST00000570546 ABLIM2Q6H8Q1 611 aa13.02□□□□□ -0.32
CIITA-204ENST00000570546 Q6ZT83 130 aa13.02□□□□□ -0.32
CIITA-204ENST00000570546 TMEM183AQ8IXX5 376 aa13.02□□□□□ -0.32
CIITA-204ENST00000570546 TMUB1Q9BVT8 246 aa13.02□□□□□ -0.32
CIITA-204ENST00000570546 DNAJC4Q9NNZ3 241 aa13.02□□□□□ -0.32
CIITA-204ENST00000570546 F2RL2O00254 374 aa13.02□□□□□ -0.33
CIITA-204ENST00000570546 EGR1P18146 543 aa13.02□□□□□ -0.33
CIITA-204ENST00000570546 CTSSP25774 331 aa13.02□□□□□ -0.33
CIITA-204ENST00000570546 GCHFRP30047 84 aa13.02□□□□□ -0.33
CIITA-204ENST00000570546 NUBP1P53384 320 aa13.02□□□□□ -0.33
CIITA-204ENST00000570546 Q1RN00 199 aa13.02□□□□□ -0.33
CIITA-204ENST00000570546 MESP1Q9BRJ9 268 aa13.02□□□□□ -0.33
CIITA-204ENST00000570546 DOCK6Q96HP0 2047 aa13.02□□□□□ -0.33
CIITA-204ENST00000570546 A0A087WWC5 75 aa13.02□□□□□ -0.33
CIITA-204ENST00000570546 PGPA6NDG6 321 aa13.02□□□□□ -0.33
CIITA-204ENST00000570546 VENTXO95231 258 aa13.02□□□□□ -0.33
CIITA-204ENST00000570546 RND2P52198 227 aa13.02□□□□□ -0.33
CIITA-204ENST00000570546 TFF3Q07654 80 aa13.02□□□□□ -0.33
CIITA-204ENST00000570546 RPL39P5Q59GN2 51 aa13.02□□□□□ -0.33
CIITA-204ENST00000570546 FAM117AQ9C073 453 aa13.02□□□□□ -0.33
CIITA-204ENST00000570546 COL5A1-AS1Q5SY13 56 aa13.02□□□□□ -0.33
CIITA-204ENST00000570546 WFIKKN1Q96NZ8 548 aa13.02□□□□□ -0.33
CIITA-204ENST00000570546 SFXN3Q9BWM7 321 aa13.02□□□□□ -0.33
CIITA-204ENST00000570546 IGKV1D-8A0A087WSZ0 117 aa13.01□□□□□ -0.33
CIITA-204ENST00000570546 LDLRAD4O15165 306 aa13.01□□□□□ -0.33
CIITA-204ENST00000570546 TRPM7Q96QT4 1865 aa13.01□□□□□ -0.33
CIITA-204ENST00000570546 OR4B1Q8NGF8 309 aa13.01□□□□□ -0.33
CIITA-204ENST00000570546 TNFRSF19Q9NS68 423 aa13.01□□□□□ -0.33
CIITA-204ENST00000570546 C17orf98A8MV24 154 aa13.01□□□□□ -0.33
CIITA-204ENST00000570546 NABP2Q9BQ15 211 aa13.01□□□□□ -0.33
CIITA-204ENST00000570546 KLHDC3Q9BQ90 382 aa13.01□□□□□ -0.33
CIITA-204ENST00000570546 LOC102723996A0A087X1L8 192 aa13.01□□□□□ -0.33
CIITA-204ENST00000570546 ZNF729A6NN14 1252 aaPredicted RBP13.01□□□□□ -0.33
CIITA-204ENST00000570546 SP9P0CG40 484 aa13.01□□□□□ -0.33
CIITA-204ENST00000570546 ERVFRD-1P60508 538 aa13.01□□□□□ -0.33
CIITA-204ENST00000570546 STPG1Q5TH74 334 aa13.01□□□□□ -0.33
CIITA-204ENST00000570546 ZNF525Q8N782 197 aa13.01□□□□□ -0.33
CIITA-204ENST00000570546 GP6Q9HCN6 339 aa13.01□□□□□ -0.33
CIITA-204ENST00000570546 MRPS18CQ9Y3D5 142 aaKnown RBP13.01□□□□□ -0.33
CIITA-204ENST00000570546 IGKV1D-13A0A0B4J2D9 117 aa13□□□□□ -0.33
CIITA-204ENST00000570546 IFITM10A6NMD0 228 aa13□□□□□ -0.33
CIITA-204ENST00000570546 IFNL4K9M1U5 179 aa13□□□□□ -0.33
CIITA-204ENST00000570546 IGKV1-13P0DP09 117 aa13□□□□□ -0.33
CIITA-204ENST00000570546 RPL30P62888 115 aaKnown RBP13□□□□□ -0.33
CIITA-204ENST00000570546 MMD2Q8IY49 270 aa13□□□□□ -0.33
CIITA-204ENST00000570546 SCNM1Q9BWG6 230 aa13□□□□□ -0.33
CIITA-204ENST00000570546 EFNA2O43921 213 aa13□□□□□ -0.33
CIITA-204ENST00000570546 CLDN18P56856 261 aa13□□□□□ -0.33
CIITA-204ENST00000570546 BPIFA4PQ86YQ2 179 aa13□□□□□ -0.33
CIITA-204ENST00000570546 TUBA4BQ9H853 241 aa13□□□□□ -0.33
CIITA-204ENST00000570546 THSD7BQ9C0I4 1608 aa13□□□□□ -0.33
CIITA-204ENST00000570546 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13□□□□□ -0.33
CIITA-204ENST00000570546 GRIFINA4D1Z8 144 aa13□□□□□ -0.33
CIITA-204ENST00000570546 SLC25A17O43808 307 aa13□□□□□ -0.33
CIITA-204ENST00000570546 IL6RP08887 468 aaPredicted RBP13□□□□□ -0.33
CIITA-204ENST00000570546 RBM14Q96PK6 669 aaKnown RBP13□□□□□ -0.33
CIITA-204ENST00000570546 CACNA1IQ9P0X4 2223 aa13□□□□□ -0.33
CIITA-204ENST00000570546 CFHR1Q03591 330 aa13□□□□□ -0.33
CIITA-204ENST00000570546 REG4Q9BYZ8 158 aa13□□□□□ -0.33
CIITA-204ENST00000570546 SCGB1C2P0DMR2 95 aa12.99□□□□□ -0.33
CIITA-204ENST00000570546 ZNRF1Q8ND25 227 aa12.99□□□□□ -0.33
CIITA-204ENST00000570546 C19orf24Q9BVV8 132 aa12.99□□□□□ -0.33
CIITA-204ENST00000570546 WFDC1Q9HC57 220 aa12.99□□□□□ -0.33
CIITA-204ENST00000570546 TRBV6-7A0A0A0MS04 114 aa12.99□□□□□ -0.33
CIITA-204ENST00000570546 CA2P00918 260 aa12.99□□□□□ -0.33
CIITA-204ENST00000570546 CYP2G1PQ6ZSU1 146 aa12.99□□□□□ -0.33
CIITA-204ENST00000570546 WBP1Q96G27 269 aa12.99□□□□□ -0.33
CIITA-204ENST00000570546 MGAMO43451 1857 aa12.99□□□□□ -0.33
CIITA-204ENST00000570546 ICAM4Q14773 271 aa12.99□□□□□ -0.33
CIITA-204ENST00000570546 CCDC144NLQ6NUI1 221 aa12.99□□□□□ -0.33
CIITA-204ENST00000570546 PCSK4Q6UW60 755 aa12.99□□□□□ -0.33
CIITA-204ENST00000570546 FGF11Q92914 225 aa12.99□□□□□ -0.33
CIITA-204ENST00000570546 GSN-AS1Q9NRJ2 163 aa12.99□□□□□ -0.33
CIITA-204ENST00000570546 LOC389332A0A1B0GUA5 103 aa12.99□□□□□ -0.33
CIITA-204ENST00000570546 E9PQ18 207 aa12.99□□□□□ -0.33
CIITA-204ENST00000570546 SRIP30626 198 aa12.99□□□□□ -0.33
CIITA-204ENST00000570546 ECSCRQ19T08 205 aa12.99□□□□□ -0.33
CIITA-204ENST00000570546 UBTD1Q9HAC8 227 aa12.99□□□□□ -0.33
CIITA-204ENST00000570546 TRBV9A0A0B4J1U6 114 aa12.98□□□□□ -0.33
CIITA-204ENST00000570546 TMEM30BQ3MIR4 351 aa12.98□□□□□ -0.33
CIITA-204ENST00000570546 FAM166AQ6J272 317 aa12.98□□□□□ -0.33
CIITA-204ENST00000570546 PLPPR1Q8TBJ4 325 aa12.98□□□□□ -0.33
CIITA-204ENST00000570546 SDF2L1Q9HCN8 221 aa12.98□□□□□ -0.33
CIITA-204ENST00000570546 J3KRW8 73 aa12.98□□□□□ -0.33
CIITA-204ENST00000570546 GLRX5Q86SX6 157 aa12.98□□□□□ -0.33
CIITA-204ENST00000570546 OR13A1Q8NGR1 328 aa12.98□□□□□ -0.33
CIITA-204ENST00000570546 MRPL32Q9BYC8 188 aaKnown RBP12.98□□□□□ -0.33
CIITA-204ENST00000570546 HILPDAQ9Y5L2 63 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms