RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 GNG3P63215 75 aa9.18□□□□□ -0.94
CLK3-226ENST00000569406 RPL18Q07020 188 aaKnown RBP9.18□□□□□ -0.94
CLK3-226ENST00000569406 SRSF6Q13247 344 aaKnown RBP9.18□□□□□ -0.94
CLK3-226ENST00000569406 CARD17Q5XLA6 110 aa9.18□□□□□ -0.94
CLK3-226ENST00000569406 UEVLDQ8IX04 471 aa9.18□□□□□ -0.94
CLK3-226ENST00000569406 PKIBQ9C010 78 aa9.18□□□□□ -0.94
CLK3-226ENST00000569406 ZNF286AQ9HBT8 521 aa9.18□□□□□ -0.94
CLK3-226ENST00000569406 ZFHX4Q86UP3 3567 aa9.18□□□□□ -0.94
CLK3-226ENST00000569406 C9orf118A6NHY6 69 aa9.18□□□□□ -0.94
CLK3-226ENST00000569406 ZNF732B4DXR9 585 aa9.18□□□□□ -0.94
CLK3-226ENST00000569406 H0Y980 276 aa9.18□□□□□ -0.94
CLK3-226ENST00000569406 H3BML4 177 aa9.18□□□□□ -0.94
CLK3-226ENST00000569406 TGFAP01135 160 aa9.18□□□□□ -0.94
CLK3-226ENST00000569406 SRFP11831 508 aa9.18□□□□□ -0.94
CLK3-226ENST00000569406 HTR1DP28221 377 aa9.18□□□□□ -0.94
CLK3-226ENST00000569406 PSG4Q00888 419 aa9.18□□□□□ -0.94
CLK3-226ENST00000569406 DEFB133Q30KQ1 61 aa9.18□□□□□ -0.94
CLK3-226ENST00000569406 VAX1Q5SQQ9 334 aa9.18□□□□□ -0.94
CLK3-226ENST00000569406 SPSB4Q96A44 273 aa9.18□□□□□ -0.94
CLK3-226ENST00000569406 C4orf45Q96LM5 186 aa9.18□□□□□ -0.94
CLK3-226ENST00000569406 PPDPFQ9H3Y8 114 aa9.18□□□□□ -0.94
CLK3-226ENST00000569406 ZNF391Q9UJN7 358 aa9.18□□□□□ -0.94
CLK3-226ENST00000569406 TNRC6BQ9UPQ9 1833 aaKnown RBP9.18□□□□□ -0.94
CLK3-226ENST00000569406 H0YIG0 161 aa9.18□□□□□ -0.94
CLK3-226ENST00000569406 CD27P26842 260 aa9.18□□□□□ -0.94
CLK3-226ENST00000569406 PSMB3P49720 205 aa9.18□□□□□ -0.94
CLK3-226ENST00000569406 SNU13P55769 128 aaKnown RBP9.18□□□□□ -0.94
CLK3-226ENST00000569406 YPEL3P61236 119 aaPredicted RBP9.18□□□□□ -0.94
CLK3-226ENST00000569406 DHRS13Q6UX07 377 aa9.18□□□□□ -0.94
CLK3-226ENST00000569406 FA2HQ7L5A8 372 aa9.18□□□□□ -0.94
CLK3-226ENST00000569406 CDC20BQ86Y33 519 aa9.18□□□□□ -0.94
CLK3-226ENST00000569406 TMEM252Q8N6L7 170 aa9.18□□□□□ -0.94
CLK3-226ENST00000569406 OR5A1Q8NGJ0 315 aa9.18□□□□□ -0.94
CLK3-226ENST00000569406 OR5P3Q8WZ94 311 aa9.18□□□□□ -0.94
CLK3-226ENST00000569406 SPATA25Q9BR10 227 aa9.18□□□□□ -0.94
CLK3-226ENST00000569406 C1QTNF4Q9BXJ3 329 aa9.18□□□□□ -0.94
CLK3-226ENST00000569406 PRO3102Q9H379 93 aa9.18□□□□□ -0.94
CLK3-226ENST00000569406 MS4A5Q9H3V2 200 aa9.18□□□□□ -0.94
CLK3-226ENST00000569406 MED29Q9NX70 200 aa9.18□□□□□ -0.94
CLK3-226ENST00000569406 NAT8BQ9UHF3 227 aa9.18□□□□□ -0.94
CLK3-226ENST00000569406 B9D1Q9UPM9 204 aa9.18□□□□□ -0.94
CLK3-226ENST00000569406 FRYQ5TBA9 3013 aa9.18□□□□□ -0.94
CLK3-226ENST00000569406 MYF5P13349 255 aa9.17□□□□□ -0.94
CLK3-226ENST00000569406 HIST1H1DP16402 221 aaKnown RBP9.17□□□□□ -0.94
CLK3-226ENST00000569406 OR1D4P47884 311 aa9.17□□□□□ -0.94
CLK3-226ENST00000569406 ABCA11PQ4W5N1 156 aa9.17□□□□□ -0.94
CLK3-226ENST00000569406 C19orf35Q6ZS72 473 aa9.17□□□□□ -0.94
CLK3-226ENST00000569406 BANF2Q9H503 90 aa9.17□□□□□ -0.94
CLK3-226ENST00000569406 C1QTNF9BB2RNN3 333 aa9.17□□□□□ -0.94
CLK3-226ENST00000569406 UTS2O95399 124 aa9.17□□□□□ -0.94
CLK3-226ENST00000569406 CER1O95813 267 aa9.17□□□□□ -0.94
CLK3-226ENST00000569406 HIST1H1EP10412 219 aaKnown RBP9.17□□□□□ -0.94
CLK3-226ENST00000569406 GP1BBP13224 206 aa9.17□□□□□ -0.94
CLK3-226ENST00000569406 CD38P28907 300 aa9.17□□□□□ -0.94
CLK3-226ENST00000569406 THBS3P49746 956 aa9.17□□□□□ -0.94
CLK3-226ENST00000569406 SPATA12Q7Z6I5 190 aa9.17□□□□□ -0.94
CLK3-226ENST00000569406 ZNF441Q8N8Z8 693 aa9.17□□□□□ -0.94
CLK3-226ENST00000569406 AMELYQ99218 206 aa9.17□□□□□ -0.94
CLK3-226ENST00000569406 AGMATQ9BSE5 352 aa9.17□□□□□ -0.94
CLK3-226ENST00000569406 SLC39A9Q9NUM3 307 aa9.17□□□□□ -0.94
CLK3-226ENST00000569406 CACNA1EQ15878 2313 aa9.17□□□□□ -0.94
CLK3-226ENST00000569406 TPRP12270 2363 aaKnown RBP9.17□□□□□ -0.94
CLK3-226ENST00000569406 CFAP47Q6ZTR5 3102 aa9.17□□□□□ -0.94
CLK3-226ENST00000569406 KBTBD11-OT1A0A1B0GTJ5 212 aa9.17□□□□□ -0.94
CLK3-226ENST00000569406 H3BP45 60 aa9.17□□□□□ -0.94
CLK3-226ENST00000569406 FRMD6-AS1P0C7T7 363 aa9.17□□□□□ -0.94
CLK3-226ENST00000569406 GPR183P32249 361 aa9.17□□□□□ -0.94
CLK3-226ENST00000569406 Q0VG73 95 aa9.17□□□□□ -0.94
CLK3-226ENST00000569406 PHLDA2Q53GA4 152 aa9.17□□□□□ -0.94
CLK3-226ENST00000569406 ZNF324BQ6AW86 544 aaPredicted RBP9.17□□□□□ -0.94
CLK3-226ENST00000569406 TDHQ8IZJ6 230 aa9.17□□□□□ -0.94
CLK3-226ENST00000569406 SLC25A45Q8N413 288 aa9.17□□□□□ -0.94
CLK3-226ENST00000569406 OR1L3Q8NH93 324 aa9.17□□□□□ -0.94
CLK3-226ENST00000569406 VSTM2AQ8TAG5 236 aa9.17□□□□□ -0.94
CLK3-226ENST00000569406 SCGB1C1Q8TD33 95 aa9.17□□□□□ -0.94
CLK3-226ENST00000569406 GPR82Q96P67 336 aa9.17□□□□□ -0.94
CLK3-226ENST00000569406 ADAMTS9Q9P2N4 1935 aa9.16□□□□□ -0.94
CLK3-226ENST00000569406 TMEM265A0A087WTH1 108 aa9.16□□□□□ -0.94
CLK3-226ENST00000569406 TRAV1-1A0A0B4J248 108 aa9.16□□□□□ -0.94
CLK3-226ENST00000569406 MDFIC2A0A1B0GVS7 189 aa9.16□□□□□ -0.94
CLK3-226ENST00000569406 LMO7DNF2Z398 122 aa9.16□□□□□ -0.94
CLK3-226ENST00000569406 H0YJW9 148 aa9.16□□□□□ -0.94
CLK3-226ENST00000569406 NXPH1P58417 271 aa9.16□□□□□ -0.94
CLK3-226ENST00000569406 FOXL1Q12952 345 aa9.16□□□□□ -0.94
CLK3-226ENST00000569406 UNC119Q13432 240 aa9.16□□□□□ -0.94
CLK3-226ENST00000569406 ZNF585BQ52M93 769 aa9.16□□□□□ -0.94
CLK3-226ENST00000569406 SP5Q6BEB4 398 aaPredicted RBP9.16□□□□□ -0.94
CLK3-226ENST00000569406 PIGTQ969N2 578 aa9.16□□□□□ -0.94
CLK3-226ENST00000569406 PHF3Q92576 2039 aaKnown RBP9.16□□□□□ -0.94
CLK3-226ENST00000569406 LOC400499M0QZD8 3231 aa9.16□□□□□ -0.94
CLK3-226ENST00000569406 TMEM150CB9EJG8 249 aa9.16□□□□□ -0.94
CLK3-226ENST00000569406 NKX2-8O15522 239 aa9.16□□□□□ -0.94
CLK3-226ENST00000569406 RNFT1Q5M7Z0 435 aa9.16□□□□□ -0.94
CLK3-226ENST00000569406 MOB1BQ7L9L4 216 aa9.16□□□□□ -0.94
CLK3-226ENST00000569406 GATAD1Q8WUU5 269 aa9.16□□□□□ -0.94
CLK3-226ENST00000569406 DDIT4LQ96D03 193 aa9.16□□□□□ -0.94
CLK3-226ENST00000569406 EMC6Q9BV81 110 aa9.16□□□□□ -0.94
CLK3-226ENST00000569406 FOXQ1Q9C009 403 aa9.16□□□□□ -0.94
CLK3-226ENST00000569406 OR2D2Q9H210 308 aa9.16□□□□□ -0.94
CLK3-226ENST00000569406 ESPL1Q14674 2120 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms