RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 ZNF124Q15973 351 aa12.15□□□□□ -0.46
VPS35-210ENST00000568784 TEX38Q6PEX7 206 aa12.15□□□□□ -0.46
VPS35-210ENST00000568784 LINC00596Q86U02 117 aa12.15□□□□□ -0.46
VPS35-210ENST00000568784 Q8IYB0 196 aa12.15□□□□□ -0.46
VPS35-210ENST00000568784 ACY3Q96HD9 319 aa12.15□□□□□ -0.46
VPS35-210ENST00000568784 TRIB1Q96RU8 372 aa12.15□□□□□ -0.46
VPS35-210ENST00000568784 HSPB9Q9BQS6 159 aa12.15□□□□□ -0.46
VPS35-210ENST00000568784 METRNQ9UJH8 293 aa12.15□□□□□ -0.46
VPS35-210ENST00000568784 IGHV3OR15-7A0A075B7D8 119 aa12.15□□□□□ -0.46
VPS35-210ENST00000568784 GNB1P62873 340 aa12.15□□□□□ -0.46
VPS35-210ENST00000568784 TMEM45BQ96B21 275 aa12.15□□□□□ -0.46
VPS35-210ENST00000568784 BTF3L4Q96K17 158 aa12.15□□□□□ -0.46
VPS35-210ENST00000568784 PKIBQ9C010 78 aa12.15□□□□□ -0.46
VPS35-210ENST00000568784 TIMM8BQ9Y5J9 83 aaPredicted RBP12.15□□□□□ -0.46
VPS35-210ENST00000568784 CEP192Q8TEP8 1941 aa12.15□□□□□ -0.47
VPS35-210ENST00000568784 A6NNC1 897 aa12.15□□□□□ -0.47
VPS35-210ENST00000568784 CRISP2P16562 243 aa12.15□□□□□ -0.47
VPS35-210ENST00000568784 DBX2Q6ZNG2 339 aa12.15□□□□□ -0.47
VPS35-210ENST00000568784 OR13A1Q8NGR1 328 aa12.15□□□□□ -0.47
VPS35-210ENST00000568784 COL5A1P20908 1838 aaPredicted RBP12.14□□□□□ -0.47
VPS35-210ENST00000568784 IGLV2-14P01704 120 aa12.14□□□□□ -0.47
VPS35-210ENST00000568784 MPV17P39210 176 aa12.14□□□□□ -0.47
VPS35-210ENST00000568784 PSG7Q13046 419 aa12.14□□□□□ -0.47
VPS35-210ENST00000568784 C21orf62-AS1Q17RA5 79 aa12.14□□□□□ -0.47
VPS35-210ENST00000568784 CISD2Q8N5K1 135 aaKnown RBP12.14□□□□□ -0.47
VPS35-210ENST00000568784 OR4P4Q8NGL7 312 aa12.14□□□□□ -0.47
VPS35-210ENST00000568784 A8MXE2 369 aa12.14□□□□□ -0.47
VPS35-210ENST00000568784 KLRC4-KLRK1H3BQV0 150 aa12.14□□□□□ -0.47
VPS35-210ENST00000568784 OR7C2O60412 319 aa12.14□□□□□ -0.47
VPS35-210ENST00000568784 DCAF10Q5QP82 559 aa12.14□□□□□ -0.47
VPS35-210ENST00000568784 UHRF2Q96PU4 802 aa12.14□□□□□ -0.47
VPS35-210ENST00000568784 TAAR6Q96RI8 345 aa12.14□□□□□ -0.47
VPS35-210ENST00000568784 PXMP4Q9Y6I8 212 aa12.14□□□□□ -0.47
VPS35-210ENST00000568784 LINC00473A8K010 186 aa12.14□□□□□ -0.47
VPS35-210ENST00000568784 B4E171 279 aa12.14□□□□□ -0.47
VPS35-210ENST00000568784 IL18BPO95998 194 aa12.14□□□□□ -0.47
VPS35-210ENST00000568784 TSPAN7P41732 249 aa12.14□□□□□ -0.47
VPS35-210ENST00000568784 RNPS1Q15287 305 aaKnown RBP12.14□□□□□ -0.47
VPS35-210ENST00000568784 FOXJ2Q9P0K8 574 aa12.14□□□□□ -0.47
VPS35-210ENST00000568784 HSPB7Q9UBY9 170 aa12.14□□□□□ -0.47
VPS35-210ENST00000568784 TRGV5A0A0B4J1U4 118 aa12.13□□□□□ -0.47
VPS35-210ENST00000568784 OOEPA6NGQ2 149 aa12.13□□□□□ -0.47
VPS35-210ENST00000568784 CD46P15529 392 aa12.13□□□□□ -0.47
VPS35-210ENST00000568784 OR5I1Q13606 314 aa12.13□□□□□ -0.47
VPS35-210ENST00000568784 RPL39P5Q59GN2 51 aa12.13□□□□□ -0.47
VPS35-210ENST00000568784 LINC01551Q86U37 167 aa12.13□□□□□ -0.47
VPS35-210ENST00000568784 OR2Z1Q8NG97 314 aa12.13□□□□□ -0.47
VPS35-210ENST00000568784 LRRC29Q8WV35 223 aa12.13□□□□□ -0.47
VPS35-210ENST00000568784 LINC00470Q9BZP3 86 aa12.13□□□□□ -0.47
VPS35-210ENST00000568784 SNURFLB1AK76 121 aa12.13□□□□□ -0.47
VPS35-210ENST00000568784 CD82P27701 267 aa12.13□□□□□ -0.47
VPS35-210ENST00000568784 CCKARP32238 428 aa12.13□□□□□ -0.47
VPS35-210ENST00000568784 TGIF2LYQ8IUE0 185 aa12.13□□□□□ -0.47
VPS35-210ENST00000568784 LRFN3Q9BTN0 628 aa12.13□□□□□ -0.47
VPS35-210ENST00000568784 NAT8BQ9UHF3 227 aa12.13□□□□□ -0.47
VPS35-210ENST00000568784 NPPCP23582 126 aa12.13□□□□□ -0.47
VPS35-210ENST00000568784 ADMP35318 185 aa12.13□□□□□ -0.47
VPS35-210ENST00000568784 FXYD3Q14802 87 aa12.13□□□□□ -0.47
VPS35-210ENST00000568784 KRTAP27-1Q3LI81 207 aa12.13□□□□□ -0.47
VPS35-210ENST00000568784 Q8NFD4 153 aa12.13□□□□□ -0.47
VPS35-210ENST00000568784 SFRP2Q96HF1 295 aa12.13□□□□□ -0.47
VPS35-210ENST00000568784 NUPR1O60356 82 aa12.12□□□□□ -0.47
VPS35-210ENST00000568784 CYC1P08574 325 aa12.12□□□□□ -0.47
VPS35-210ENST00000568784 COX5BP10606 129 aa12.12□□□□□ -0.47
VPS35-210ENST00000568784 PRR31Q5SQ13 230 aa12.12□□□□□ -0.47
VPS35-210ENST00000568784 NCKAP5O14513 1909 aa12.12□□□□□ -0.47
VPS35-210ENST00000568784 FAM90A26D6RGX4 464 aa12.12□□□□□ -0.47
VPS35-210ENST00000568784 OR9G9P0C7N8 305 aa12.12□□□□□ -0.47
VPS35-210ENST00000568784 SRP14P37108 136 aaKnown RBP12.12□□□□□ -0.47
VPS35-210ENST00000568784 MRPL54Q6P161 138 aaKnown RBP12.12□□□□□ -0.47
VPS35-210ENST00000568784 KLF14Q8TD94 323 aaPredicted RBP12.12□□□□□ -0.47
VPS35-210ENST00000568784 S1PR3Q99500 378 aa12.12□□□□□ -0.47
VPS35-210ENST00000568784 RRHO14718 337 aa12.12□□□□□ -0.47
VPS35-210ENST00000568784 CLDN14O95500 239 aa12.12□□□□□ -0.47
VPS35-210ENST00000568784 SRSF7Q16629 238 aaKnown RBP eCLIP12.12□□□□□ -0.47
VPS35-210ENST00000568784 OR1L6Q8NGR2 347 aa12.12□□□□□ -0.47
VPS35-210ENST00000568784 FAM122AQ96E09 287 aa12.12□□□□□ -0.47
VPS35-210ENST00000568784 HSD17B10Q99714 261 aaKnown RBP12.12□□□□□ -0.47
VPS35-210ENST00000568784 DSPP15924 2871 aaKnown RBP12.11□□□□□ -0.47
VPS35-210ENST00000568784 GNG10P50151 68 aa12.11□□□□□ -0.47
VPS35-210ENST00000568784 RAB31Q13636 194 aa12.11□□□□□ -0.47
VPS35-210ENST00000568784 DHRS13Q6UX07 377 aa12.11□□□□□ -0.47
VPS35-210ENST00000568784 VAMP8Q9BV40 100 aa12.11□□□□□ -0.47
VPS35-210ENST00000568784 SNHG12Q9BXW3 62 aa12.11□□□□□ -0.47
VPS35-210ENST00000568784 IGKV3D-15A0A087WSY6 115 aa12.11□□□□□ -0.47
VPS35-210ENST00000568784 NTN3O00634 580 aaPredicted RBP12.11□□□□□ -0.47
VPS35-210ENST00000568784 PDE6DO43924 150 aa12.11□□□□□ -0.47
VPS35-210ENST00000568784 SMPD2O60906 423 aa12.11□□□□□ -0.47
VPS35-210ENST00000568784 OR10J4P0C629 311 aa12.11□□□□□ -0.47
VPS35-210ENST00000568784 TPPP2P59282 170 aa12.11□□□□□ -0.47
VPS35-210ENST00000568784 RPL31P62899 125 aaKnown RBP12.11□□□□□ -0.47
VPS35-210ENST00000568784 RPP30P78346 268 aaKnown RBP12.11□□□□□ -0.47
VPS35-210ENST00000568784 OR8I2Q8N0Y5 310 aa12.11□□□□□ -0.47
VPS35-210ENST00000568784 FAM216AQ8WUB2 273 aa12.11□□□□□ -0.47
VPS35-210ENST00000568784 MS4A5Q9H3V2 200 aa12.11□□□□□ -0.47
VPS35-210ENST00000568784 RPH3ALQ9UNE2 315 aa12.11□□□□□ -0.47
VPS35-210ENST00000568784 KLF13Q9Y2Y9 288 aaPredicted RBP12.11□□□□□ -0.47
VPS35-210ENST00000568784 RBFOX2O43251 390 aaKnown RBP eCLIP12.11□□□□□ -0.478e-9■□□□□ 10.2
VPS35-210ENST00000568784 SIGLECL1Q8N7X8 197 aa12.11□□□□□ -0.47
VPS35-210ENST00000568784 OCC1Q8TAD7 63 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms