RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 TMEM229BQ8NBD8 167 aa7.66□□□□□ -1.18
CLN3-220ENST00000566040 OR4C16Q8NGL9 310 aa7.66□□□□□ -1.18
CLN3-220ENST00000566040 OSR1Q8TAX0 266 aaPredicted RBP7.66□□□□□ -1.18
CLN3-220ENST00000566040 FAM110DQ8TAY7 271 aaPredicted RBP7.66□□□□□ -1.18
CLN3-220ENST00000566040 TCTEX1D2Q8WW35 142 aa7.66□□□□□ -1.18
CLN3-220ENST00000566040 DIRAS2Q96HU8 199 aa7.66□□□□□ -1.18
CLN3-220ENST00000566040 TSNAXQ99598 290 aaKnown RBP7.66□□□□□ -1.18
CLN3-220ENST00000566040 GNB4Q9HAV0 340 aa7.66□□□□□ -1.18
CLN3-220ENST00000566040 A3GALT2U3KPV4 340 aa7.66□□□□□ -1.18
CLN3-220ENST00000566040 SMIM31A0A1B0GVY4 71 aa7.65□□□□□ -1.18
CLN3-220ENST00000566040 TCRBV4S1A1TA0A5B7 111 aa7.65□□□□□ -1.18
CLN3-220ENST00000566040 ANKRD20A5PA0PJZ0 165 aa7.65□□□□□ -1.18
CLN3-220ENST00000566040 TEX22C9J3V5 150 aa7.65□□□□□ -1.18
CLN3-220ENST00000566040 SHOXO15266 292 aa7.65□□□□□ -1.18
CLN3-220ENST00000566040 RBFOX2O43251 390 aaKnown RBP eCLIP7.65□□□□□ -1.18
CLN3-220ENST00000566040 PGLYRP1O75594 196 aaPredicted RBP7.65□□□□□ -1.18
CLN3-220ENST00000566040 SLC22A5O76082 557 aa7.65□□□□□ -1.18
CLN3-220ENST00000566040 S1PR2O95136 353 aa7.65□□□□□ -1.18
CLN3-220ENST00000566040 OPN1MWP04001 364 aa7.65□□□□□ -1.18
CLN3-220ENST00000566040 RLN1P04808 185 aa7.65□□□□□ -1.18
CLN3-220ENST00000566040 OPN1MW2P0DN77 364 aa7.65□□□□□ -1.18
CLN3-220ENST00000566040 OPN1MW3P0DN78 364 aa7.65□□□□□ -1.18
CLN3-220ENST00000566040 RRASP10301 218 aa7.65□□□□□ -1.18
CLN3-220ENST00000566040 LGALS7P47929 136 aa7.65□□□□□ -1.18
CLN3-220ENST00000566040 UCP3P55916 312 aa7.65□□□□□ -1.18
CLN3-220ENST00000566040 DEFA5Q01523 94 aa7.65□□□□□ -1.18
CLN3-220ENST00000566040 TAGLNQ01995 201 aaKnown RBP7.65□□□□□ -1.18
CLN3-220ENST00000566040 RTL8BQ17RB0 113 aa7.65□□□□□ -1.18
CLN3-220ENST00000566040 ECSCRQ19T08 205 aa7.65□□□□□ -1.18
CLN3-220ENST00000566040 DEFB136Q30KP8 78 aa7.65□□□□□ -1.18
CLN3-220ENST00000566040 PYHIN1Q6K0P9 492 aa7.65□□□□□ -1.18
CLN3-220ENST00000566040 C8orf86Q6ZUL3 223 aa7.65□□□□□ -1.18
CLN3-220ENST00000566040 LINC00482Q8N8I6 264 aa7.65□□□□□ -1.18
CLN3-220ENST00000566040 TEX45Q8NA69 505 aa7.65□□□□□ -1.18
CLN3-220ENST00000566040 ZBTB34Q8NCN2 500 aa7.65□□□□□ -1.18
CLN3-220ENST00000566040 OR13C8Q8NGS7 320 aa7.65□□□□□ -1.18
CLN3-220ENST00000566040 TMEM167AQ8TBQ9 72 aa7.65□□□□□ -1.18
CLN3-220ENST00000566040 ARPC1AQ92747 370 aa7.65□□□□□ -1.18
CLN3-220ENST00000566040 RAX2Q96IS3 184 aa7.65□□□□□ -1.18
CLN3-220ENST00000566040 DUX3Q96PT4 197 aa7.65□□□□□ -1.18
CLN3-220ENST00000566040 P2RX4Q99571 388 aa7.65□□□□□ -1.18
CLN3-220ENST00000566040 KIAA1456Q9P272 454 aa7.65□□□□□ -1.18
CLN3-220ENST00000566040 RBM7Q9Y580 266 aaKnown RBP7.65□□□□□ -1.18
CLN3-220ENST00000566040 TSSC4Q9Y5U2 329 aaPredicted RBP7.65□□□□□ -1.18
CLN3-220ENST00000566040 A6NHS1 94 aa7.64□□□□□ -1.19
CLN3-220ENST00000566040 I3L521 148 aa7.64□□□□□ -1.19
CLN3-220ENST00000566040 KBTBD11O94819 623 aa7.64□□□□□ -1.19
CLN3-220ENST00000566040 ELANEP08246 267 aa7.64□□□□□ -1.19
CLN3-220ENST00000566040 P0C879 139 aa7.64□□□□□ -1.19
CLN3-220ENST00000566040 PI3P19957 117 aa7.64□□□□□ -1.19
CLN3-220ENST00000566040 ETV6P41212 452 aa7.64□□□□□ -1.19
CLN3-220ENST00000566040 HERV-K104P61576 105 aa7.64□□□□□ -1.19
CLN3-220ENST00000566040 GNB1P62873 340 aa7.64□□□□□ -1.19
CLN3-220ENST00000566040 ZNF45Q02386 682 aa7.64□□□□□ -1.19
CLN3-220ENST00000566040 SSBP1Q04837 148 aaKnown RBP7.64□□□□□ -1.19
CLN3-220ENST00000566040 FHL3Q13643 280 aa7.64□□□□□ -1.19
CLN3-220ENST00000566040 KLF9Q13886 244 aaPredicted RBP7.64□□□□□ -1.19
CLN3-220ENST00000566040 FXYD3Q14802 87 aa7.64□□□□□ -1.19
CLN3-220ENST00000566040 PHLDA2Q53GA4 152 aa7.64□□□□□ -1.19
CLN3-220ENST00000566040 SAMD5Q5TGI4 173 aa7.64□□□□□ -1.19
CLN3-220ENST00000566040 OR4A47Q6IF82 309 aa7.64□□□□□ -1.19
CLN3-220ENST00000566040 SPAG16Q8N0X2 631 aa7.64□□□□□ -1.19
CLN3-220ENST00000566040 ZNF491Q8N8L2 437 aa7.64□□□□□ -1.19
CLN3-220ENST00000566040 LFNGQ8NES3 379 aa7.64□□□□□ -1.19
CLN3-220ENST00000566040 WFDC9Q8NEX5 89 aa7.64□□□□□ -1.19
CLN3-220ENST00000566040 OR4X2Q8NGF9 303 aa7.64□□□□□ -1.19
CLN3-220ENST00000566040 OR6Q1Q8NGQ2 317 aa7.64□□□□□ -1.19
CLN3-220ENST00000566040 OR51H1Q8NH63 302 aa7.64□□□□□ -1.19
CLN3-220ENST00000566040 OR4S2Q8NH73 311 aa7.64□□□□□ -1.19
CLN3-220ENST00000566040 DBX1A6NMT0 343 aa7.63□□□□□ -1.19
CLN3-220ENST00000566040 G3V4G9 280 aa7.63□□□□□ -1.19
CLN3-220ENST00000566040 GPR31O00270 319 aa7.63□□□□□ -1.19
CLN3-220ENST00000566040 NOL3O60936 208 aaKnown RBP7.63□□□□□ -1.19
CLN3-220ENST00000566040 APELAP0DMC3 54 aa7.63□□□□□ -1.19
CLN3-220ENST00000566040 TBPP20226 339 aa7.63□□□□□ -1.19
CLN3-220ENST00000566040 CDX1P47902 265 aaPredicted RBP7.63□□□□□ -1.19
CLN3-220ENST00000566040 PPP5CP53041 499 aa7.63□□□□□ -1.19
CLN3-220ENST00000566040 RND3P61587 244 aa7.63□□□□□ -1.19
CLN3-220ENST00000566040 MRPS10P82664 201 aaKnown RBP7.63□□□□□ -1.19
CLN3-220ENST00000566040 IL18Q14116 193 aa7.63□□□□□ -1.19
CLN3-220ENST00000566040 BEAN1Q3B7T3 259 aa7.63□□□□□ -1.19
CLN3-220ENST00000566040 AKIRIN2Q53H80 203 aa7.63□□□□□ -1.19
CLN3-220ENST00000566040 ACTBL2Q562R1 376 aa7.63□□□□□ -1.19
CLN3-220ENST00000566040 RNASE10Q5GAN6 216 aaKnown RBP7.63□□□□□ -1.19
CLN3-220ENST00000566040 KPRPQ5T749 579 aaPredicted RBP7.63□□□□□ -1.19
CLN3-220ENST00000566040 STEAP1BQ6NZ63 245 aa7.63□□□□□ -1.19
CLN3-220ENST00000566040 TEX38Q6PEX7 206 aa7.63□□□□□ -1.19
CLN3-220ENST00000566040 MRPL41Q8IXM3 137 aaKnown RBP7.63□□□□□ -1.19
CLN3-220ENST00000566040 ARRDC1Q8N5I2 433 aa7.63□□□□□ -1.19
CLN3-220ENST00000566040 COMMD1Q8N668 190 aa7.63□□□□□ -1.19
CLN3-220ENST00000566040 ADAD2Q8NCV1 583 aaKnown RBP7.63□□□□□ -1.19
CLN3-220ENST00000566040 OR6F1Q8NGZ6 308 aa7.63□□□□□ -1.19
CLN3-220ENST00000566040 GRPEL2Q8TAA5 225 aa7.63□□□□□ -1.19
CLN3-220ENST00000566040 FCAMRQ8WWV6 532 aa7.63□□□□□ -1.19
CLN3-220ENST00000566040 SRSF12Q8WXF0 261 aaKnown RBP7.63□□□□□ -1.19
CLN3-220ENST00000566040 R3HDM4Q96D70 268 aa7.63□□□□□ -1.19
CLN3-220ENST00000566040 RHOVQ96L33 236 aa7.63□□□□□ -1.19
CLN3-220ENST00000566040 SRRQ9GZT4 340 aa7.63□□□□□ -1.19
CLN3-220ENST00000566040 ALX4Q9H161 411 aaPredicted RBP7.63□□□□□ -1.19
CLN3-220ENST00000566040 SLC2A9Q9NRM0 540 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms