RNA–Protein interactions for RNA: ENST00000564247.1

CMTM3-208, Transcript of CKLF like MARVEL transmembrane domain containing 3, human

TSL 2

Gene CMTM3, Length 1,127 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CMTM3-208	ENST00000564247	BCL6B	Q8N143	479 aa	Predicted RBP	13.61	□□□□□ -0.23
CMTM3-208	ENST00000564247	KIRREL3-AS3	Q8N7Y1	241 aa	Predicted RBP	13.61	□□□□□ -0.23
CMTM3-208	ENST00000564247	OSR1	Q8TAX0	266 aa	Predicted RBP	13.61	□□□□□ -0.23
CMTM3-208	ENST00000564247	CFHR4	Q92496	578 aa		13.61	□□□□□ -0.23
CMTM3-208	ENST00000564247	RNF5	Q99942	180 aa		13.61	□□□□□ -0.23
CMTM3-208	ENST00000564247	COMMD9	Q9P000	198 aa		13.61	□□□□□ -0.23
CMTM3-208	ENST00000564247	VGLL3	A8MV65	326 aa		13.6	□□□□□ -0.23
CMTM3-208	ENST00000564247	MOS	P00540	346 aa		13.6	□□□□□ -0.23
CMTM3-208	ENST00000564247	NQO2	P16083	231 aa		13.6	□□□□□ -0.23
CMTM3-208	ENST00000564247	BRWD1-AS2	P59051	145 aa		13.6	□□□□□ -0.23
CMTM3-208	ENST00000564247	ERVK-16	P61578	105 aa		13.6	□□□□□ -0.23
CMTM3-208	ENST00000564247	DEFB112	Q30KQ8	113 aa		13.6	□□□□□ -0.23
CMTM3-208	ENST00000564247	SIGLECL1	Q8N7X8	197 aa		13.6	□□□□□ -0.23
CMTM3-208	ENST00000564247	LRTM2	Q8N967	370 aa		13.6	□□□□□ -0.23
CMTM3-208	ENST00000564247	RNASE11	Q8TAA1	199 aa	Known RBP	13.6	□□□□□ -0.23
CMTM3-208	ENST00000564247	RBPMS	Q93062	196 aa	Known RBP	13.6	□□□□□ -0.23
CMTM3-208	ENST00000564247	RRNAD1	Q96FB5	475 aa	Known RBP	13.6	□□□□□ -0.23
CMTM3-208	ENST00000564247	TSNAX	Q99598	290 aa	Known RBP	13.6	□□□□□ -0.23
CMTM3-208	ENST00000564247	SSX3	Q99909	188 aa		13.6	□□□□□ -0.23
CMTM3-208	ENST00000564247	MED28	Q9H204	178 aa		13.6	□□□□□ -0.23
CMTM3-208	ENST00000564247	ESM1	Q9NQ30	184 aa		13.6	□□□□□ -0.23
CMTM3-208	ENST00000564247	PRR13	Q9NZ81	148 aa		13.6	□□□□□ -0.23
CMTM3-208	ENST00000564247	SOX21	Q9Y651	276 aa	Predicted RBP	13.6	□□□□□ -0.23
CMTM3-208	ENST00000564247		A0A0B4J293	547 aa		13.59	□□□□□ -0.23
CMTM3-208	ENST00000564247	DUXB	A0A1W2PPF3	345 aa		13.59	□□□□□ -0.23
CMTM3-208	ENST00000564247	FAM90A9P	A6NNJ1	464 aa		13.59	□□□□□ -0.23
CMTM3-208	ENST00000564247	S1PR2	O95136	353 aa		13.59	□□□□□ -0.23
CMTM3-208	ENST00000564247	IFNA21	P01568	189 aa		13.59	□□□□□ -0.23
CMTM3-208	ENST00000564247	IGKV1D-33	P01593	117 aa		13.59	□□□□□ -0.23
CMTM3-208	ENST00000564247	IGKV1-33	P01594	117 aa		13.59	□□□□□ -0.23
CMTM3-208	ENST00000564247	SNRNP70	P08621	437 aa	Known RBP	13.59	□□□□□ -0.23
CMTM3-208	ENST00000564247	LIN54	Q6MZP7	749 aa		13.59	□□□□□ -0.23
CMTM3-208	ENST00000564247	DMBX1	Q8NFW5	382 aa		13.59	□□□□□ -0.23
CMTM3-208	ENST00000564247	R3HDM4	Q96D70	268 aa		13.59	□□□□□ -0.23
CMTM3-208	ENST00000564247	BTBD17	A6NE02	478 aa		13.58	□□□□□ -0.24
CMTM3-208	ENST00000564247	KRAS	P01116	189 aa		13.58	□□□□□ -0.24
CMTM3-208	ENST00000564247	IGKV1-16	P04430	117 aa		13.58	□□□□□ -0.24
CMTM3-208	ENST00000564247	CD24	P25063	80 aa		13.58	□□□□□ -0.24
CMTM3-208	ENST00000564247	AKR1C2	P52895	323 aa		13.58	□□□□□ -0.24
CMTM3-208	ENST00000564247	EBI3	Q14213	229 aa		13.58	□□□□□ -0.24
CMTM3-208	ENST00000564247	HNF4G	Q14541	408 aa		13.58	□□□□□ -0.24
CMTM3-208	ENST00000564247	EAF1	Q96JC9	268 aa	Predicted RBP	13.58	□□□□□ -0.24
CMTM3-208	ENST00000564247	HARBI1	Q96MB7	349 aa		13.58	□□□□□ -0.24
CMTM3-208	ENST00000564247	ZNF48	Q96MX3	618 aa	Predicted RBP	13.58	□□□□□ -0.24
CMTM3-208	ENST00000564247	TMED3	Q9Y3Q3	217 aa		13.58	□□□□□ -0.24
CMTM3-208	ENST00000564247	HOXB5	P09067	269 aa		13.57	□□□□□ -0.24
CMTM3-208	ENST00000564247	TMEM11	P17152	192 aa		13.57	□□□□□ -0.24
CMTM3-208	ENST00000564247	VDAC1	P21796	283 aa		13.57	□□□□□ -0.24
CMTM3-208	ENST00000564247	UBA52	P62987	128 aa	Known RBP	13.57	□□□□□ -0.24
CMTM3-208	ENST00000564247	VMA21	Q3ZAQ7	101 aa		13.57	□□□□□ -0.24
CMTM3-208	ENST00000564247		Q6YL49	198 aa		13.57	□□□□□ -0.24
CMTM3-208	ENST00000564247	H2BFWT	Q7Z2G1	175 aa		13.57	□□□□□ -0.24
CMTM3-208	ENST00000564247	LYZL2	Q7Z4W2	148 aa		13.57	□□□□□ -0.24
CMTM3-208	ENST00000564247	SLC35G3	Q8N808	338 aa		13.57	□□□□□ -0.24
CMTM3-208	ENST00000564247	LHFPL5	Q8TAF8	219 aa		13.57	□□□□□ -0.24
CMTM3-208	ENST00000564247	RAB18	Q9NP72	206 aa		13.57	□□□□□ -0.24
CMTM3-208	ENST00000564247	C1RL	Q9NZP8	487 aa		13.57	□□□□□ -0.24
CMTM3-208	ENST00000564247	KIAA1456	Q9P272	454 aa		13.57	□□□□□ -0.24
CMTM3-208	ENST00000564247	PITPNC1	Q9UKF7	332 aa		13.57	□□□□□ -0.24
CMTM3-208	ENST00000564247	MDFIC2	A0A1B0GVS7	189 aa		13.56	□□□□□ -0.24
CMTM3-208	ENST00000564247		H3BUX3	64 aa		13.56	□□□□□ -0.24
CMTM3-208	ENST00000564247	IGKV1-39	P01597	117 aa		13.56	□□□□□ -0.24
CMTM3-208	ENST00000564247	IGKV1D-39	P04432	117 aa		13.56	□□□□□ -0.24
CMTM3-208	ENST00000564247	G6PC	P35575	357 aa		13.56	□□□□□ -0.24
CMTM3-208	ENST00000564247	SSX9	Q7RTT3	188 aa		13.56	□□□□□ -0.24
CMTM3-208	ENST00000564247	FAM219A	Q8IW50	185 aa		13.56	□□□□□ -0.24
CMTM3-208	ENST00000564247	OR8H1	Q8NGG4	311 aa		13.56	□□□□□ -0.24
CMTM3-208	ENST00000564247	OR5R1	Q8NH85	324 aa		13.56	□□□□□ -0.24
CMTM3-208	ENST00000564247	VSTM2A	Q8TAG5	236 aa		13.56	□□□□□ -0.24
CMTM3-208	ENST00000564247	LSM10	Q969L4	123 aa	Known RBP	13.56	□□□□□ -0.24
CMTM3-208	ENST00000564247	SEC22A	Q96IW7	307 aa		13.56	□□□□□ -0.24
CMTM3-208	ENST00000564247	RHOV	Q96L33	236 aa		13.56	□□□□□ -0.24
CMTM3-208	ENST00000564247	PRDM13	Q9H4Q3	707 aa		13.56	□□□□□ -0.24
CMTM3-208	ENST00000564247	TENM1	Q9UKZ4	2725 aa		13.56	□□□□□ -0.24
CMTM3-208	ENST00000564247	hCG_2014768	A0A024R1R8	64 aa		13.55	□□□□□ -0.24
CMTM3-208	ENST00000564247	TMEM89	A2RUT3	159 aa		13.55	□□□□□ -0.24
CMTM3-208	ENST00000564247	DNAJC9-AS1	A6NH13	148 aa		13.55	□□□□□ -0.24
CMTM3-208	ENST00000564247	DBX1	A6NMT0	343 aa		13.55	□□□□□ -0.24
CMTM3-208	ENST00000564247	MARCH11	A6NNE9	402 aa		13.55	□□□□□ -0.24
CMTM3-208	ENST00000564247	RRAS2	P62070	204 aa	Predicted RBP	13.55	□□□□□ -0.24
CMTM3-208	ENST00000564247	POU2AF1	Q16633	256 aa		13.55	□□□□□ -0.24
CMTM3-208	ENST00000564247	SSMEM1	Q8WWF3	244 aa		13.55	□□□□□ -0.24
CMTM3-208	ENST00000564247	RITA1	Q96K30	269 aa		13.55	□□□□□ -0.24
CMTM3-208	ENST00000564247	MMP24	Q9Y5R2	645 aa		13.55	□□□□□ -0.24
CMTM3-208	ENST00000564247	C13orf42	A0A1B0GVH6	325 aa		13.54	□□□□□ -0.24
CMTM3-208	ENST00000564247	NCBP2L	A6PVI3	153 aa	Known RBP	13.54	□□□□□ -0.24
CMTM3-208	ENST00000564247	SRRM4	A7MD48	611 aa	Known RBP	13.54	□□□□□ -0.24
CMTM3-208	ENST00000564247	FAM25E	A8MYX2	175 aa		13.54	□□□□□ -0.24
CMTM3-208	ENST00000564247	CLDN34	H7C241	214 aa		13.54	□□□□□ -0.24
CMTM3-208	ENST00000564247	GOSR2	O14653	212 aa		13.54	□□□□□ -0.24
CMTM3-208	ENST00000564247	SNAPC5	O75971	98 aa		13.54	□□□□□ -0.24
CMTM3-208	ENST00000564247	OR2A4	O95047	310 aa		13.54	□□□□□ -0.24
CMTM3-208	ENST00000564247	SPDEF	O95238	335 aa		13.54	□□□□□ -0.24
CMTM3-208	ENST00000564247	IER3	P46695	156 aa		13.54	□□□□□ -0.24
CMTM3-208	ENST00000564247	COMP	P49747	757 aa	Predicted RBP	13.54	□□□□□ -0.24
CMTM3-208	ENST00000564247	UBE2K	P61086	200 aa		13.54	□□□□□ -0.24
CMTM3-208	ENST00000564247	PLGLA	Q15195	96 aa		13.54	□□□□□ -0.24
CMTM3-208	ENST00000564247	PSG5	Q15238	335 aa		13.54	□□□□□ -0.24
CMTM3-208	ENST00000564247	MMD	Q15546	238 aa		13.54	□□□□□ -0.24
CMTM3-208	ENST00000564247	GGNBP1	Q5YKI7	109 aa		13.54	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms