RNA–Protein interactions for RNA: ENST00000563448.1

SMG1-208, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,016 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-208ENST00000563448 SSX9Q7RTT3 188 aa8.19□□□□□ -1.1
SMG1-208ENST00000563448 FAM219AQ8IW50 185 aa8.19□□□□□ -1.1
SMG1-208ENST00000563448 OR8H3Q8N146 312 aa8.19□□□□□ -1.1
SMG1-208ENST00000563448 OR4D5Q8NGN0 318 aa8.19□□□□□ -1.1
SMG1-208ENST00000563448 PPP1R1CQ8WVI7 109 aa8.19□□□□□ -1.1
SMG1-208ENST00000563448 MALSU1Q96EH3 234 aa8.19□□□□□ -1.1
SMG1-208ENST00000563448 RRNAD1Q96FB5 475 aaKnown RBP8.19□□□□□ -1.1
SMG1-208ENST00000563448 RITA1Q96K30 269 aa8.19□□□□□ -1.1
SMG1-208ENST00000563448 TNCP24821 2201 aa8.18□□□□□ -1.1
SMG1-208ENST00000563448 A0A1B0GU03 582 aa8.18□□□□□ -1.1
SMG1-208ENST00000563448 OOSP1A8MZH6 123 aa8.18□□□□□ -1.1
SMG1-208ENST00000563448 RGS13O14921 159 aa8.18□□□□□ -1.1
SMG1-208ENST00000563448 PLXNB1O43157 2135 aa8.18□□□□□ -1.1
SMG1-208ENST00000563448 PITX3O75364 302 aa8.18□□□□□ -1.1
SMG1-208ENST00000563448 C1QBP02746 253 aa8.18□□□□□ -1.1
SMG1-208ENST00000563448 OR9G9P0C7N8 305 aa8.18□□□□□ -1.1
SMG1-208ENST00000563448 HABP2Q14520 560 aaPredicted RBP8.18□□□□□ -1.1
SMG1-208ENST00000563448 POU2AF1Q16633 256 aa8.18□□□□□ -1.1
SMG1-208ENST00000563448 GPR157Q5UAW9 335 aa8.18□□□□□ -1.1
SMG1-208ENST00000563448 BRD3OSQ6XYD6 125 aa8.18□□□□□ -1.1
SMG1-208ENST00000563448 DMBX1Q8NFW5 382 aa8.18□□□□□ -1.1
SMG1-208ENST00000563448 OR11H4Q8NGC9 324 aa8.18□□□□□ -1.1
SMG1-208ENST00000563448 OSR1Q8TAX0 266 aaPredicted RBP8.18□□□□□ -1.1
SMG1-208ENST00000563448 FLYWCH2Q96CP2 140 aaKnown RBP8.18□□□□□ -1.1
SMG1-208ENST00000563448 SPIN2AQ99865 258 aa8.18□□□□□ -1.1
SMG1-208ENST00000563448 SPIN2BQ9BPZ2 258 aa8.18□□□□□ -1.1
SMG1-208ENST00000563448 CACNG5Q9UF02 275 aa8.18□□□□□ -1.1
SMG1-208ENST00000563448 SHOXO15266 292 aa8.17□□□□□ -1.1
SMG1-208ENST00000563448 HRASP01112 189 aa8.17□□□□□ -1.1
SMG1-208ENST00000563448 SLC25A6P12236 298 aa8.17□□□□□ -1.1
SMG1-208ENST00000563448 RAB13P51153 203 aa8.17□□□□□ -1.1
SMG1-208ENST00000563448 RPS16P62249 146 aaKnown RBP8.17□□□□□ -1.1
SMG1-208ENST00000563448 RAB32Q13637 225 aa8.17□□□□□ -1.1
SMG1-208ENST00000563448 SMCO1Q147U7 214 aa8.17□□□□□ -1.1
SMG1-208ENST00000563448 LRRC37A5PQ49AS3 106 aa8.17□□□□□ -1.1
SMG1-208ENST00000563448 H2BFWTQ7Z2G1 175 aa8.17□□□□□ -1.1
SMG1-208ENST00000563448 OR4C13Q8NGP0 309 aa8.17□□□□□ -1.1
SMG1-208ENST00000563448 TMEM140Q9NV12 185 aa8.17□□□□□ -1.1
SMG1-208ENST00000563448 SOX21Q9Y651 276 aaPredicted RBP8.17□□□□□ -1.1
SMG1-208ENST00000563448 CCDC168Q8NDH2 2452 aa8.17□□□□□ -1.1
SMG1-208ENST00000563448 TRAV3A0A0B4J244 114 aa8.17□□□□□ -1.1
SMG1-208ENST00000563448 NXPH3O95157 252 aa8.17□□□□□ -1.1
SMG1-208ENST00000563448 VENTXO95231 258 aa8.17□□□□□ -1.1
SMG1-208ENST00000563448 MPC2O95563 127 aa8.17□□□□□ -1.1
SMG1-208ENST00000563448 SCGB1D2O95969 90 aa8.17□□□□□ -1.1
SMG1-208ENST00000563448 IGLV2-23P01705 113 aa8.17□□□□□ -1.1
SMG1-208ENST00000563448 MBPP02686 304 aaPredicted RBP8.17□□□□□ -1.1
SMG1-208ENST00000563448 IL6RP08887 468 aaPredicted RBP8.17□□□□□ -1.1
SMG1-208ENST00000563448 PSMB6P28072 239 aa8.17□□□□□ -1.1
SMG1-208ENST00000563448 CD1BP29016 333 aa8.17□□□□□ -1.1
SMG1-208ENST00000563448 ZFP69Q49AA0 526 aa8.17□□□□□ -1.1
SMG1-208ENST00000563448 FBLN7Q53RD9 439 aa8.17□□□□□ -1.1
SMG1-208ENST00000563448 OR4A47Q6IF82 309 aa8.17□□□□□ -1.1
SMG1-208ENST00000563448 CCDC144NLQ6NUI1 221 aa8.17□□□□□ -1.1
SMG1-208ENST00000563448 NOXA1Q86UR1 476 aa8.17□□□□□ -1.1
SMG1-208ENST00000563448 OR1S1Q8NH92 325 aa8.17□□□□□ -1.1
SMG1-208ENST00000563448 RHOVQ96L33 236 aa8.17□□□□□ -1.1
SMG1-208ENST00000563448 HARBI1Q96MB7 349 aa8.17□□□□□ -1.1
SMG1-208ENST00000563448 MS4A7Q9GZW8 240 aaPredicted RBP8.17□□□□□ -1.1
SMG1-208ENST00000563448 NSG2Q9Y328 171 aa8.17□□□□□ -1.1
SMG1-208ENST00000563448 A0A0U1RQK1 487 aa8.16□□□□□ -1.1
SMG1-208ENST00000563448 FAM90A9PA6NNJ1 464 aa8.16□□□□□ -1.1
SMG1-208ENST00000563448 H0YIZ8 118 aa8.16□□□□□ -1.1
SMG1-208ENST00000563448 FSHBP01225 129 aa8.16□□□□□ -1.1
SMG1-208ENST00000563448 SAA1P0DJI8 122 aaPredicted RBP8.16□□□□□ -1.1
SMG1-208ENST00000563448 CD24P25063 80 aa8.16□□□□□ -1.1
SMG1-208ENST00000563448 CNTFRP26992 372 aa8.16□□□□□ -1.1
SMG1-208ENST00000563448 ERVK-16P61578 105 aa8.16□□□□□ -1.1
SMG1-208ENST00000563448 RELBQ01201 579 aa8.16□□□□□ -1.1
SMG1-208ENST00000563448 ID3Q02535 119 aa8.16□□□□□ -1.1
SMG1-208ENST00000563448 KRTAP1-1Q07627 177 aa8.16□□□□□ -1.1
SMG1-208ENST00000563448 CXorf66Q5JRM2 361 aaPredicted RBP8.16□□□□□ -1.1
SMG1-208ENST00000563448 PUSL1Q8N0Z8 303 aaKnown RBP8.16□□□□□ -1.1
SMG1-208ENST00000563448 RNF126Q9BV68 326 aa8.16□□□□□ -1.1
SMG1-208ENST00000563448 COA4Q9NYJ1 87 aa8.16□□□□□ -1.1
SMG1-208ENST00000563448 LSM5Q9Y4Y9 91 aaKnown RBP8.16□□□□□ -1.1
SMG1-208ENST00000563448 ZFHX3Q15911 3703 aa8.16□□□□□ -1.1
SMG1-208ENST00000563448 SVEP1Q4LDE5 3571 aa8.16□□□□□ -1.1
SMG1-208ENST00000563448 CSPG4Q6UVK1 2322 aa8.16□□□□□ -1.1
SMG1-208ENST00000563448 K7EPK0 472 aa8.15□□□□□ -1.1
SMG1-208ENST00000563448 IGKV1D-33P01593 117 aa8.15□□□□□ -1.1
SMG1-208ENST00000563448 IGKV1-33P01594 117 aa8.15□□□□□ -1.1
SMG1-208ENST00000563448 SNRNP70P08621 437 aaKnown RBP8.15□□□□□ -1.1
SMG1-208ENST00000563448 NKX2-1P43699 371 aaPredicted RBP8.15□□□□□ -1.1
SMG1-208ENST00000563448 ARHGDIBP52566 201 aa8.15□□□□□ -1.1
SMG1-208ENST00000563448 NKX2-5P52952 324 aaPredicted RBP8.15□□□□□ -1.1
SMG1-208ENST00000563448 S100A10P60903 97 aa8.15□□□□□ -1.1
SMG1-208ENST00000563448 FGL1Q08830 312 aa8.15□□□□□ -1.1
SMG1-208ENST00000563448 FAM120AOSQ5T036 256 aa8.15□□□□□ -1.1
SMG1-208ENST00000563448 C11orf87Q6NUJ2 197 aa8.15□□□□□ -1.1
SMG1-208ENST00000563448 FOXRED2Q8IWF2 684 aa8.15□□□□□ -1.1
SMG1-208ENST00000563448 FAM71E2Q8N5Q1 922 aa8.15□□□□□ -1.1
SMG1-208ENST00000563448 BET1LQ9NYM9 111 aa8.15□□□□□ -1.1
SMG1-208ENST00000563448 TEX15Q9BXT5 2789 aa8.15□□□□□ -1.1
SMG1-208ENST00000563448 ZANQ9Y493 2812 aa8.15□□□□□ -1.1
SMG1-208ENST00000563448 UPK2O00526 184 aa8.15□□□□□ -1.11
SMG1-208ENST00000563448 OR2B8PP59922 312 aa8.15□□□□□ -1.11
SMG1-208ENST00000563448 EBI3Q14213 229 aa8.15□□□□□ -1.11
SMG1-208ENST00000563448 EAF1Q96JC9 268 aaPredicted RBP8.15□□□□□ -1.11
SMG1-208ENST00000563448 AIFM2Q9BRQ8 373 aa8.15□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms