RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 H0YL77 283 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 H3BRM9 83 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 K7EQD1 137 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 M0QXV9 152 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 ANGPTL7O43827 346 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 RAMP1O60894 148 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 CRLF1O75462 422 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 GCM2O75603 506 aaPredicted RBP2.74□□□□□ -1.97
VPS35-203ENST00000562420 OR7C1O76099 320 aaPredicted RBP2.74□□□□□ -1.97
VPS35-203ENST00000562420 CNIH1O95406 144 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 KLF8O95600 359 aaPredicted RBP2.74□□□□□ -1.97
VPS35-203ENST00000562420 JCHAINP01591 159 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 GYPAP02724 150 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 CATP04040 527 aaKnown RBP2.74□□□□□ -1.97
VPS35-203ENST00000562420 KLK1P06870 262 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 MRPL3P09001 348 aaKnown RBP2.74□□□□□ -1.97
VPS35-203ENST00000562420 OR4A8P0C604 315 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 OR9G9P0C7N8 305 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 LINC00869P0C866 280 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 SP9P0CG40 484 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 CT45A6P0DMU7 189 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 CT45A5P0DMU8 189 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 CT45A7P0DMV0 189 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 GATA1P15976 413 aaPredicted RBP2.74□□□□□ -1.97
VPS35-203ENST00000562420 CRYBB3P26998 211 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 PSMB4P28070 264 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 CFHR2P36980 270 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 XCR1P46094 333 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 DAP3P51398 398 aaKnown RBP2.74□□□□□ -1.97
VPS35-203ENST00000562420 ATP1B3P54709 279 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 YPEL3P61236 119 aaPredicted RBP2.74□□□□□ -1.97
VPS35-203ENST00000562420 BTG2P78543 158 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 SMAGPQ0VAQ4 97 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 Q0VG73 95 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 ZP4Q12836 540 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 PSG7Q13046 419 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 GNMTQ14749 295 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 TNXAQ16473 311 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 CT45A1Q5HYN5 189 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 OTPQ5XKR4 325 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 SFXN4Q6P4A7 337 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 Q6ZN92 141 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 ZNF621Q6ZSS3 439 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 PRR22Q8IZ63 422 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 CMTM1Q8IZ96 169 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 TMEM123Q8N131 208 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 GPD1LQ8N335 351 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 SMIM20Q8N5G0 67 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 SIGLECL1Q8N7X8 197 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 GPR32P1Q8NGA4 272 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 OR10P1Q8NGE3 313 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 OR10G7Q8NGN6 311 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 ATP6V0E2Q8NHE4 81 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 MFSD8Q8NHS3 518 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 CT45A3Q8NHU0 189 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 C8orf46Q8TAG6 207 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 PLPPR1Q8TBJ4 325 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 AQP3Q92482 292 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 APOBEC3DQ96AK3 386 aaPredicted RBP2.74□□□□□ -1.97
VPS35-203ENST00000562420 CXorf40BQ96DE9 158 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 SMIM19Q96E16 107 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 PCED1BQ96HM7 432 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 FAM218AQ96MZ4 157 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 RCHY1Q96PM5 261 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 DERL3Q96Q80 235 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 SDF2Q99470 211 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 ATP5SQ99766 215 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 ANAPC13Q9BS18 74 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 AGMATQ9BSE5 352 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 EFCAB11Q9BUY7 163 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 SCRT1Q9BWW7 348 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 TSSK6Q9BXA6 273 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 MRPL32Q9BYC8 188 aaKnown RBP2.74□□□□□ -1.97
VPS35-203ENST00000562420 COA1Q9GZY4 146 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 MS4A6AQ9H2W1 248 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 MAP1LC3AQ9H492 121 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 POMKQ9H5K3 350 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 MRPL17Q9NRX2 175 aaKnown RBP2.74□□□□□ -1.97
VPS35-203ENST00000562420 ZNF226Q9NYT6 803 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 IL36GQ9NZH8 169 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 ZNF319Q9P2F9 582 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 ANXA10Q9UJ72 324 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 VPREB3Q9UKI3 123 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 PILRBQ9UKJ0 227 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 SCML2Q9UQR0 700 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 YARS2Q9Y2Z4 477 aaKnown RBP2.74□□□□□ -1.97
VPS35-203ENST00000562420 WASHC3Q9Y3C0 194 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 NOP16Q9Y3C1 178 aaKnown RBP2.74□□□□□ -1.97
VPS35-203ENST00000562420 CSAG2Q9Y5P2 127 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 RGPD3A6NKT7 1758 aaPredicted RBP2.74□□□□□ -1.97
VPS35-203ENST00000562420 RGPD4Q7Z3J3 1758 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 QSER1Q2KHR3 1735 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 DSPPQ9NZW4 1301 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 NHSQ6T4R5 1651 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 ZFC3H1O60293 1989 aaKnown RBP2.73□□□□□ -1.97
VPS35-203ENST00000562420 A0A1W2PRE2 83 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 FABP5P3A8MUU1 101 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 H7C1C5 153 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 HSD17B6O14756 317 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 RER1O15258 196 aa2.73□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms