RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 CDC42EP3Q9UKI2 254 aa11.2□□□□□ -0.62
CLK3-206ENST00000562078 KIAA1324LA8MWY0 1029 aaPredicted RBP11.2□□□□□ -0.62
CLK3-206ENST00000562078 F5H5K5 113 aa11.2□□□□□ -0.62
CLK3-206ENST00000562078 FCN1O00602 326 aa11.2□□□□□ -0.62
CLK3-206ENST00000562078 CXCL13O43927 109 aa11.2□□□□□ -0.62
CLK3-206ENST00000562078 DEFA4P12838 97 aa11.2□□□□□ -0.62
CLK3-206ENST00000562078 ARG2P78540 354 aa11.2□□□□□ -0.62
CLK3-206ENST00000562078 Q0VG73 95 aa11.2□□□□□ -0.62
CLK3-206ENST00000562078 ZNF818PQ6ZRF7 136 aa11.2□□□□□ -0.62
CLK3-206ENST00000562078 C1orf122Q6ZSJ8 110 aa11.2□□□□□ -0.62
CLK3-206ENST00000562078 VASH2Q86V25 355 aa11.2□□□□□ -0.62
CLK3-206ENST00000562078 LYZL4Q96KX0 146 aa11.2□□□□□ -0.62
CLK3-206ENST00000562078 UBE2L5PA0A1B0GUS4 154 aa11.19□□□□□ -0.62
CLK3-206ENST00000562078 SPRY1O43609 319 aaPredicted RBP11.19□□□□□ -0.62
CLK3-206ENST00000562078 THBS3P49746 956 aa11.19□□□□□ -0.62
CLK3-206ENST00000562078 KRTCAP3Q53RY4 240 aa11.19□□□□□ -0.62
CLK3-206ENST00000562078 LRRC10Q5BKY1 277 aa11.19□□□□□ -0.62
CLK3-206ENST00000562078 ACSM6Q6P461 480 aa11.19□□□□□ -0.62
CLK3-206ENST00000562078 FOXL2NBQ6ZUU3 175 aa11.19□□□□□ -0.62
CLK3-206ENST00000562078 GJC3Q8NFK1 279 aa11.19□□□□□ -0.62
CLK3-206ENST00000562078 WDR61Q9GZS3 305 aaKnown RBP11.19□□□□□ -0.62
CLK3-206ENST00000562078 URB1O60287 2271 aaKnown RBP11.19□□□□□ -0.62
CLK3-206ENST00000562078 C11orf94C9JXX5 98 aa11.19□□□□□ -0.62
CLK3-206ENST00000562078 DNPH1O43598 174 aa11.19□□□□□ -0.62
CLK3-206ENST00000562078 GFRA3O60609 400 aa11.19□□□□□ -0.62
CLK3-206ENST00000562078 NAPSAO96009 420 aa11.19□□□□□ -0.62
CLK3-206ENST00000562078 CCL1P22362 96 aa11.19□□□□□ -0.62
CLK3-206ENST00000562078 ZNF83P51522 516 aa11.19□□□□□ -0.62
CLK3-206ENST00000562078 GNB1P62873 340 aa11.19□□□□□ -0.62
CLK3-206ENST00000562078 RELBQ01201 579 aa11.19□□□□□ -0.62
CLK3-206ENST00000562078 MPV17L2Q567V2 206 aa11.19□□□□□ -0.62
CLK3-206ENST00000562078 GAPTQ8N292 157 aa11.19□□□□□ -0.62
CLK3-206ENST00000562078 OR10D3Q8NH80 312 aa11.19□□□□□ -0.62
CLK3-206ENST00000562078 OR4C12Q96R67 309 aa11.19□□□□□ -0.62
CLK3-206ENST00000562078 SLC7A10Q9NS82 523 aa11.19□□□□□ -0.62
CLK3-206ENST00000562078 ERRFI1Q9UJM3 462 aaPredicted RBP11.19□□□□□ -0.62
CLK3-206ENST00000562078 A0A1W2PS18 150 aa11.18□□□□□ -0.62
CLK3-206ENST00000562078 NTF4P34130 210 aa11.18□□□□□ -0.62
CLK3-206ENST00000562078 IER3P46695 156 aa11.18□□□□□ -0.62
CLK3-206ENST00000562078 PRRX1P54821 245 aa11.18□□□□□ -0.62
CLK3-206ENST00000562078 ZNF90Q03938 601 aa11.18□□□□□ -0.62
CLK3-206ENST00000562078 ATP1A1-AS1Q5TC04 95 aa11.18□□□□□ -0.62
CLK3-206ENST00000562078 FAM19A2Q8N3H0 131 aa11.18□□□□□ -0.62
CLK3-206ENST00000562078 FER1L6-AS2Q96M78 137 aa11.18□□□□□ -0.62
CLK3-206ENST00000562078 HES7Q9BYE0 225 aa11.18□□□□□ -0.62
CLK3-206ENST00000562078 ASPMQ8IZT6 3477 aa11.18□□□□□ -0.62
CLK3-206ENST00000562078 DOCK7Q96N67 2140 aa11.18□□□□□ -0.62
CLK3-206ENST00000562078 ZNF716A6NP11 495 aa11.18□□□□□ -0.62
CLK3-206ENST00000562078 DLL1O00548 723 aa11.18□□□□□ -0.62
CLK3-206ENST00000562078 NDUFB4O95168 129 aa11.18□□□□□ -0.62
CLK3-206ENST00000562078 KITLGP21583 273 aa11.18□□□□□ -0.62
CLK3-206ENST00000562078 PMP22Q01453 160 aa11.18□□□□□ -0.62
CLK3-206ENST00000562078 PIGYQ3MUY2 71 aa11.18□□□□□ -0.62
CLK3-206ENST00000562078 ABHD17BQ5VST6 288 aa11.18□□□□□ -0.62
CLK3-206ENST00000562078 VWA1Q6PCB0 445 aa11.18□□□□□ -0.62
CLK3-206ENST00000562078 PNKDQ8N490 385 aa11.18□□□□□ -0.62
CLK3-206ENST00000562078 OR5B3Q8NH48 314 aa11.18□□□□□ -0.62
CLK3-206ENST00000562078 NEUROG1Q92886 237 aa11.18□□□□□ -0.62
CLK3-206ENST00000562078 PLEK2Q9NYT0 353 aa11.18□□□□□ -0.62
CLK3-206ENST00000562078 ZNF816-ZNF321PA0A0X1KG74 233 aa11.17□□□□□ -0.62
CLK3-206ENST00000562078 AHRRA9YTQ3 701 aa11.17□□□□□ -0.62
CLK3-206ENST00000562078 SNURFLB1AK76 121 aa11.17□□□□□ -0.62
CLK3-206ENST00000562078 NEURL1O76050 574 aa11.17□□□□□ -0.62
CLK3-206ENST00000562078 APOBEC3AP31941 199 aaPredicted RBP11.17□□□□□ -0.62
CLK3-206ENST00000562078 CLDN15P56746 228 aa11.17□□□□□ -0.62
CLK3-206ENST00000562078 IGF2-ASQ6U949 168 aa11.17□□□□□ -0.62
CLK3-206ENST00000562078 OR1K1Q8NGR3 316 aa11.17□□□□□ -0.62
CLK3-206ENST00000562078 TAF15Q92804 592 aaKnown RBP eCLIP11.17□□□□□ -0.62
CLK3-206ENST00000562078 BOKQ9UMX3 212 aaPredicted RBP11.17□□□□□ -0.62
CLK3-206ENST00000562078 SELENOKQ9Y6D0 94 aa11.17□□□□□ -0.62
CLK3-206ENST00000562078 MDFIC2A0A1B0GVS7 189 aa11.17□□□□□ -0.62
CLK3-206ENST00000562078 HLA-DRB5Q30154 266 aa11.17□□□□□ -0.62
CLK3-206ENST00000562078 KIAA1644Q3SXP7 199 aa11.17□□□□□ -0.62
CLK3-206ENST00000562078 PRSS57Q6UWY2 283 aa11.17□□□□□ -0.62
CLK3-206ENST00000562078 OR2M7Q8NG81 312 aa11.17□□□□□ -0.62
CLK3-206ENST00000562078 ST6GALNAC6Q969X2 333 aa11.17□□□□□ -0.62
CLK3-206ENST00000562078 KCNS1Q96KK3 526 aa11.17□□□□□ -0.62
CLK3-206ENST00000562078 PSENENQ9NZ42 101 aa11.17□□□□□ -0.62
CLK3-206ENST00000562078 ABI3Q9P2A4 366 aa11.17□□□□□ -0.62
CLK3-206ENST00000562078 PRRC2CQ9Y520 2896 aaKnown RBP11.17□□□□□ -0.62
CLK3-206ENST00000562078 TRBV20OR9-2A0A075B6H5 130 aa11.16□□□□□ -0.62
CLK3-206ENST00000562078 CTXND1A0A1B0GTU2 59 aa11.16□□□□□ -0.62
CLK3-206ENST00000562078 M0R135 149 aa11.16□□□□□ -0.62
CLK3-206ENST00000562078 SLC17A3O00476 420 aa11.16□□□□□ -0.62
CLK3-206ENST00000562078 TOX4O94842 621 aa11.16□□□□□ -0.62
CLK3-206ENST00000562078 CA2P00918 260 aa11.16□□□□□ -0.62
CLK3-206ENST00000562078 IGLL1P15814 213 aa11.16□□□□□ -0.62
CLK3-206ENST00000562078 CTSSP25774 331 aa11.16□□□□□ -0.62
CLK3-206ENST00000562078 LGALS7P47929 136 aa11.16□□□□□ -0.62
CLK3-206ENST00000562078 SRSF6Q13247 344 aaKnown RBP11.16□□□□□ -0.62
CLK3-206ENST00000562078 RSPO1Q2MKA7 263 aaPredicted RBP11.16□□□□□ -0.62
CLK3-206ENST00000562078 STUMQ69YW2 141 aa11.16□□□□□ -0.62
CLK3-206ENST00000562078 ASCL4Q6XD76 172 aa11.16□□□□□ -0.62
CLK3-206ENST00000562078 Q6ZRM9 215 aa11.16□□□□□ -0.62
CLK3-206ENST00000562078 AAED1Q7RTV5 226 aa11.16□□□□□ -0.62
CLK3-206ENST00000562078 ZDHHC23Q8IYP9 409 aa11.16□□□□□ -0.62
CLK3-206ENST00000562078 ZNF799Q96GE5 643 aa11.16□□□□□ -0.62
CLK3-206ENST00000562078 PIGLQ9Y2B2 252 aa11.16□□□□□ -0.62
CLK3-206ENST00000562078 WASHC3Q9Y3C0 194 aa11.16□□□□□ -0.62
CLK3-206ENST00000562078 IGKV1D-13A0A0B4J2D9 117 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms