RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 PRRT1Q99946 306 aa10.24□□□□□ -0.77
NEDD8-208ENST00000560427 THAP7Q9BT49 309 aaPredicted RBP10.24□□□□□ -0.77
NEDD8-208ENST00000560427 PARP11Q9NR21 331 aa10.24□□□□□ -0.77
NEDD8-208ENST00000560427 SLC2A8Q9NY64 477 aa10.24□□□□□ -0.77
NEDD8-208ENST00000560427 LINC01548A6NM66 108 aa10.23□□□□□ -0.77
NEDD8-208ENST00000560427 HPRT1P00492 218 aa10.23□□□□□ -0.77
NEDD8-208ENST00000560427 IGHG4P01861 327 aa10.23□□□□□ -0.77
NEDD8-208ENST00000560427 RLN1P04808 185 aa10.23□□□□□ -0.77
NEDD8-208ENST00000560427 SAA1P0DJI8 122 aaPredicted RBP10.23□□□□□ -0.77
NEDD8-208ENST00000560427 CD28P10747 220 aa10.23□□□□□ -0.77
NEDD8-208ENST00000560427 SLC6A1P30531 599 aa10.23□□□□□ -0.77
NEDD8-208ENST00000560427 TAS2R31P59538 309 aa10.23□□□□□ -0.77
NEDD8-208ENST00000560427 RND3P61587 244 aa10.23□□□□□ -0.77
NEDD8-208ENST00000560427 NDPQ00604 133 aa10.23□□□□□ -0.77
NEDD8-208ENST00000560427 CFHR3Q02985 330 aa10.23□□□□□ -0.77
NEDD8-208ENST00000560427 TMEM267Q0VDI3 215 aaPredicted RBP10.23□□□□□ -0.77
NEDD8-208ENST00000560427 OR2B11Q5JQS5 317 aa10.23□□□□□ -0.77
NEDD8-208ENST00000560427 RNF152Q8N8N0 203 aa10.23□□□□□ -0.77
NEDD8-208ENST00000560427 GDPD1Q8N9F7 314 aa10.23□□□□□ -0.77
NEDD8-208ENST00000560427 OR4D10Q8NGI6 311 aa10.23□□□□□ -0.77
NEDD8-208ENST00000560427 OR51H1Q8NH63 302 aa10.23□□□□□ -0.77
NEDD8-208ENST00000560427 ZFAND1Q8TCF1 268 aa10.23□□□□□ -0.77
NEDD8-208ENST00000560427 ARPC1AQ92747 370 aa10.23□□□□□ -0.77
NEDD8-208ENST00000560427 PLEKHA2Q9HB19 425 aa10.23□□□□□ -0.77
NEDD8-208ENST00000560427 COMMD9Q9P000 198 aa10.23□□□□□ -0.77
NEDD8-208ENST00000560427 TSSC4Q9Y5U2 329 aaPredicted RBP10.23□□□□□ -0.77
NEDD8-208ENST00000560427 TRAV41A0A0B4J266 112 aa10.22□□□□□ -0.77
NEDD8-208ENST00000560427 OR2A4O95047 310 aa10.22□□□□□ -0.77
NEDD8-208ENST00000560427 ELANEP08246 267 aa10.22□□□□□ -0.77
NEDD8-208ENST00000560427 FGF2P09038 288 aa10.22□□□□□ -0.77
NEDD8-208ENST00000560427 ZNF735P0CB33 412 aa10.22□□□□□ -0.77
NEDD8-208ENST00000560427 PGAM2P15259 253 aa10.22□□□□□ -0.77
NEDD8-208ENST00000560427 NQO2P16083 231 aa10.22□□□□□ -0.77
NEDD8-208ENST00000560427 F2RP25116 425 aa10.22□□□□□ -0.77
NEDD8-208ENST00000560427 BRWD1-AS2P59051 145 aa10.22□□□□□ -0.77
NEDD8-208ENST00000560427 ZNF45Q02386 682 aa10.22□□□□□ -0.77
NEDD8-208ENST00000560427 FOXE3Q13461 319 aa10.22□□□□□ -0.77
NEDD8-208ENST00000560427 POU2AF1Q16633 256 aa10.22□□□□□ -0.77
NEDD8-208ENST00000560427 PRSS8Q16651 343 aa10.22□□□□□ -0.77
NEDD8-208ENST00000560427 SCGB2B2Q4G0G5 96 aa10.22□□□□□ -0.77
NEDD8-208ENST00000560427 MMD2Q8IY49 270 aa10.22□□□□□ -0.77
NEDD8-208ENST00000560427 CADM3Q8N126 398 aa10.22□□□□□ -0.77
NEDD8-208ENST00000560427 C11orf44Q8N8P7 122 aa10.22□□□□□ -0.77
NEDD8-208ENST00000560427 OR4C16Q8NGL9 310 aa10.22□□□□□ -0.77
NEDD8-208ENST00000560427 OR4A5Q8NH83 315 aa10.22□□□□□ -0.77
NEDD8-208ENST00000560427 TMEM68Q96MH6 324 aa10.22□□□□□ -0.77
NEDD8-208ENST00000560427 OR2A7Q96R45 310 aa10.22□□□□□ -0.77
NEDD8-208ENST00000560427 CITED2Q99967 270 aaPredicted RBP10.22□□□□□ -0.77
NEDD8-208ENST00000560427 SRRQ9GZT4 340 aa10.22□□□□□ -0.77
NEDD8-208ENST00000560427 SLC2A9Q9NRM0 540 aa10.22□□□□□ -0.77
NEDD8-208ENST00000560427 TPSG1Q9NRR2 321 aa10.22□□□□□ -0.77
NEDD8-208ENST00000560427 ZFP57Q9NU63 452 aa10.22□□□□□ -0.77
NEDD8-208ENST00000560427 LINC00527Q9UJ94 153 aa10.22□□□□□ -0.77
NEDD8-208ENST00000560427 SCP2D1Q9UJQ7 156 aa10.22□□□□□ -0.77
NEDD8-208ENST00000560427 TCRBV4S1A1TA0A5B7 111 aa10.21□□□□□ -0.77
NEDD8-208ENST00000560427 FCN1O00602 326 aa10.21□□□□□ -0.77
NEDD8-208ENST00000560427 RAMP3O60896 148 aa10.21□□□□□ -0.77
NEDD8-208ENST00000560427 B3GALNT1O75752 331 aa10.21□□□□□ -0.77
NEDD8-208ENST00000560427 ACTL6BO94805 426 aa10.21□□□□□ -0.77
NEDD8-208ENST00000560427 CNIH1O95406 144 aa10.21□□□□□ -0.77
NEDD8-208ENST00000560427 PPIFP30405 207 aaKnown RBP10.21□□□□□ -0.77
NEDD8-208ENST00000560427 PPP5CP53041 499 aa10.21□□□□□ -0.77
NEDD8-208ENST00000560427 KLF9Q13886 244 aaPredicted RBP10.21□□□□□ -0.77
NEDD8-208ENST00000560427 FXYD3Q14802 87 aa10.21□□□□□ -0.77
NEDD8-208ENST00000560427 PHLDA2Q53GA4 152 aa10.21□□□□□ -0.77
NEDD8-208ENST00000560427 AKIRIN2Q53H80 203 aa10.21□□□□□ -0.77
NEDD8-208ENST00000560427 C19orf54Q5BKX5 351 aa10.21□□□□□ -0.77
NEDD8-208ENST00000560427 TCTEX1D4Q5JR98 221 aa10.21□□□□□ -0.77
NEDD8-208ENST00000560427 ZNF329Q86UD4 541 aa10.21□□□□□ -0.77
NEDD8-208ENST00000560427 PUSL1Q8N0Z8 303 aaKnown RBP10.21□□□□□ -0.77
NEDD8-208ENST00000560427 TOMM5Q8N4H5 51 aa10.21□□□□□ -0.77
NEDD8-208ENST00000560427 CCDC71LQ8N9Z2 235 aa10.21□□□□□ -0.77
NEDD8-208ENST00000560427 MINDY2Q8NBR6 621 aa10.21□□□□□ -0.77
NEDD8-208ENST00000560427 RHOVQ96L33 236 aa10.21□□□□□ -0.77
NEDD8-208ENST00000560427 SCGB3A2Q96PL1 93 aa10.21□□□□□ -0.77
NEDD8-208ENST00000560427 CLCC1Q96S66 551 aa10.21□□□□□ -0.77
NEDD8-208ENST00000560427 GPHA2Q96T91 129 aa10.21□□□□□ -0.77
NEDD8-208ENST00000560427 BET1LQ9NYM9 111 aa10.21□□□□□ -0.77
NEDD8-208ENST00000560427 KBTBD11O94819 623 aa10.2□□□□□ -0.78
NEDD8-208ENST00000560427 CTSDP07339 412 aaPredicted RBP10.2□□□□□ -0.78
NEDD8-208ENST00000560427 EGR2P11161 476 aaPredicted RBP10.2□□□□□ -0.78
NEDD8-208ENST00000560427 PSMB8P28062 276 aa10.2□□□□□ -0.78
NEDD8-208ENST00000560427 MAS1LP35410 378 aa10.2□□□□□ -0.78
NEDD8-208ENST00000560427 ERVK-16P61578 105 aa10.2□□□□□ -0.78
NEDD8-208ENST00000560427 CXorf66Q5JRM2 361 aaPredicted RBP10.2□□□□□ -0.78
NEDD8-208ENST00000560427 FAAP20Q6NZ36 180 aa10.2□□□□□ -0.78
NEDD8-208ENST00000560427 C10orf99Q6UWK7 81 aa10.2□□□□□ -0.78
NEDD8-208ENST00000560427 TBC1D26Q86UD7 250 aa10.2□□□□□ -0.78
NEDD8-208ENST00000560427 OR4F17Q8NGA8 305 aa10.2□□□□□ -0.78
NEDD8-208ENST00000560427 OR5M8Q8NGP6 311 aa10.2□□□□□ -0.78
NEDD8-208ENST00000560427 OR13C8Q8NGS7 320 aa10.2□□□□□ -0.78
NEDD8-208ENST00000560427 TMEM167AQ8TBQ9 72 aa10.2□□□□□ -0.78
NEDD8-208ENST00000560427 ABHD5Q8WTS1 349 aa10.2□□□□□ -0.78
NEDD8-208ENST00000560427 OR4F4Q96R69 305 aa10.2□□□□□ -0.78
NEDD8-208ENST00000560427 COPZ2Q9P299 210 aa10.2□□□□□ -0.78
NEDD8-208ENST00000560427 C14orf166Q9Y224 244 aaKnown RBP10.2□□□□□ -0.78
NEDD8-208ENST00000560427 FOXA2Q9Y261 457 aaPredicted RBP10.2□□□□□ -0.78
NEDD8-208ENST00000560427 NUBP2Q9Y5Y2 271 aa10.2□□□□□ -0.78
NEDD8-208ENST00000560427 TET2Q6N021 2002 aaPredicted RBP10.19□□□□□ -0.78
NEDD8-208ENST00000560427 ADARB2-AS1A8MUL3 147 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms