RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 CNIH2Q6PI25 160 aa13.55□□□□□ -0.24
HDDC3-205ENST00000559898 ACOT12Q8WYK0 555 aa13.55□□□□□ -0.24
HDDC3-205ENST00000559898 PHB2Q99623 299 aa13.55□□□□□ -0.24
HDDC3-205ENST00000559898 RSRP1Q9BUV0 290 aa13.55□□□□□ -0.24
HDDC3-205ENST00000559898 DCSTAMPQ9H295 470 aa13.55□□□□□ -0.24
HDDC3-205ENST00000559898 Q9H521 79 aa13.55□□□□□ -0.24
HDDC3-205ENST00000559898 SPATA2Q9UM82 520 aa13.55□□□□□ -0.24
HDDC3-205ENST00000559898 SMAD5-AS1Q9Y6J3 95 aa13.55□□□□□ -0.24
HDDC3-205ENST00000559898 HMX3A6NHT5 357 aa13.54□□□□□ -0.24
HDDC3-205ENST00000559898 H3BUA1 57 aa13.54□□□□□ -0.24
HDDC3-205ENST00000559898 TNFSF12O43508 249 aa13.54□□□□□ -0.24
HDDC3-205ENST00000559898 FRMD6-AS1P0C7T7 363 aa13.54□□□□□ -0.24
HDDC3-205ENST00000559898 RRASP10301 218 aa13.54□□□□□ -0.24
HDDC3-205ENST00000559898 EDN2P20800 178 aa13.54□□□□□ -0.24
HDDC3-205ENST00000559898 AADACP22760 399 aa13.54□□□□□ -0.24
HDDC3-205ENST00000559898 SYNJ2BPP57105 145 aa13.54□□□□□ -0.24
HDDC3-205ENST00000559898 DCTN2Q13561 401 aaKnown RBP13.54□□□□□ -0.24
HDDC3-205ENST00000559898 KLF5Q13887 457 aaPredicted RBP13.54□□□□□ -0.24
HDDC3-205ENST00000559898 KCTD9Q7L273 389 aa13.54□□□□□ -0.24
HDDC3-205ENST00000559898 Q8N1Y9 231 aa13.54□□□□□ -0.24
HDDC3-205ENST00000559898 ADTRPQ96IZ2 230 aa13.54□□□□□ -0.24
HDDC3-205ENST00000559898 DCUN1D5Q9BTE7 237 aa13.54□□□□□ -0.24
HDDC3-205ENST00000559898 CCL28Q9NRJ3 127 aa13.54□□□□□ -0.24
HDDC3-205ENST00000559898 TAS2R8Q9NYW2 309 aa13.54□□□□□ -0.24
HDDC3-205ENST00000559898 IGLV1-51P01701 117 aa13.53□□□□□ -0.24
HDDC3-205ENST00000559898 NHLRC4P0CG21 123 aaPredicted RBP13.53□□□□□ -0.24
HDDC3-205ENST00000559898 CD40LGP29965 261 aa13.53□□□□□ -0.24
HDDC3-205ENST00000559898 CBX3Q13185 183 aa13.53□□□□□ -0.24
HDDC3-205ENST00000559898 CDK10Q15131 360 aa13.53□□□□□ -0.24
HDDC3-205ENST00000559898 ZNF343Q6P1L6 599 aa13.53□□□□□ -0.24
HDDC3-205ENST00000559898 OSR1Q8TAX0 266 aaPredicted RBP13.53□□□□□ -0.24
HDDC3-205ENST00000559898 SNAPC3Q92966 411 aa13.53□□□□□ -0.24
HDDC3-205ENST00000559898 OR4C12Q96R67 309 aa13.53□□□□□ -0.24
HDDC3-205ENST00000559898 RANGRFQ9HD47 186 aaPredicted RBP13.53□□□□□ -0.24
HDDC3-205ENST00000559898 AKIP1Q9NQ31 210 aa13.53□□□□□ -0.24
HDDC3-205ENST00000559898 IZUMO1RA6ND01 250 aa13.52□□□□□ -0.25
HDDC3-205ENST00000559898 TEX22C9J3V5 150 aa13.52□□□□□ -0.25
HDDC3-205ENST00000559898 IL6RP08887 468 aaPredicted RBP13.52□□□□□ -0.25
HDDC3-205ENST00000559898 OR9G9P0C7N8 305 aa13.52□□□□□ -0.25
HDDC3-205ENST00000559898 LSM3P62310 102 aaKnown RBP13.52□□□□□ -0.25
HDDC3-205ENST00000559898 ARL6IP1Q15041 203 aa13.52□□□□□ -0.25
HDDC3-205ENST00000559898 MFSD4AQ8N468 514 aa13.52□□□□□ -0.25
HDDC3-205ENST00000559898 BEST4Q8NFU0 473 aa13.52□□□□□ -0.25
HDDC3-205ENST00000559898 OR6Q1Q8NGQ2 317 aa13.52□□□□□ -0.25
HDDC3-205ENST00000559898 TCTEX1D2Q8WW35 142 aa13.52□□□□□ -0.25
HDDC3-205ENST00000559898 PEF1Q9UBV8 284 aaKnown RBP13.52□□□□□ -0.25
HDDC3-205ENST00000559898 BRI3O95415 125 aa13.51□□□□□ -0.25
HDDC3-205ENST00000559898 CSN3P07498 182 aa13.51□□□□□ -0.25
HDDC3-205ENST00000559898 CTXN2P0C2S0 81 aa13.51□□□□□ -0.25
HDDC3-205ENST00000559898 FCGR2CP31995 323 aa13.51□□□□□ -0.25
HDDC3-205ENST00000559898 RHOGP84095 191 aa13.51□□□□□ -0.25
HDDC3-205ENST00000559898 KCTD21Q4G0X4 260 aa13.51□□□□□ -0.25
HDDC3-205ENST00000559898 ADAMTSL5Q6ZMM2 481 aa13.51□□□□□ -0.25
HDDC3-205ENST00000559898 SSX9Q7RTT3 188 aa13.51□□□□□ -0.25
HDDC3-205ENST00000559898 HOGA1Q86XE5 327 aa13.51□□□□□ -0.25
HDDC3-205ENST00000559898 SECTM1Q8WVN6 248 aa13.51□□□□□ -0.25
HDDC3-205ENST00000559898 AUNIPQ9H7T9 357 aa13.51□□□□□ -0.25
HDDC3-205ENST00000559898 SELENOKQ9Y6D0 94 aa13.51□□□□□ -0.25
HDDC3-205ENST00000559898 S4R3C0 116 aa13.51□□□□□ -0.25
HDDC3-205ENST00000559898 A0A0G2JLM5 398 aa13.5□□□□□ -0.25
HDDC3-205ENST00000559898 CGB1A6NKQ9 187 aa13.5□□□□□ -0.25
HDDC3-205ENST00000559898 BMPR1BO00238 502 aa13.5□□□□□ -0.25
HDDC3-205ENST00000559898 MPPED1O15442 326 aa13.5□□□□□ -0.25
HDDC3-205ENST00000559898 IGHV3-23P01764 117 aa13.5□□□□□ -0.25
HDDC3-205ENST00000559898 RPS19P39019 145 aaKnown RBP13.5□□□□□ -0.25
HDDC3-205ENST00000559898 PUSL1Q8N0Z8 303 aaKnown RBP13.5□□□□□ -0.25
HDDC3-205ENST00000559898 OR9G4Q8NGQ1 327 aa13.5□□□□□ -0.25
HDDC3-205ENST00000559898 YIPF6Q96EC8 236 aa13.5□□□□□ -0.25
HDDC3-205ENST00000559898 TMEM68Q96MH6 324 aa13.5□□□□□ -0.25
HDDC3-205ENST00000559898 DMRT1Q9Y5R6 373 aa13.5□□□□□ -0.25
HDDC3-205ENST00000559898 ETV7Q9Y603 341 aa13.5□□□□□ -0.25
HDDC3-205ENST00000559898 STAB2Q8WWQ8 2551 aa13.49□□□□□ -0.25
HDDC3-205ENST00000559898 TRBV9A0A0B4J1U6 114 aa13.49□□□□□ -0.25
HDDC3-205ENST00000559898 TRAV3A0A0B4J244 114 aa13.49□□□□□ -0.25
HDDC3-205ENST00000559898 PPP5D1E7EU14 171 aa13.49□□□□□ -0.25
HDDC3-205ENST00000559898 OR2J3O76001 311 aa13.49□□□□□ -0.25
HDDC3-205ENST00000559898 HLA-AP01891 365 aaKnown RBP13.49□□□□□ -0.25
HDDC3-205ENST00000559898 AREGP15514 252 aa13.49□□□□□ -0.25
HDDC3-205ENST00000559898 ZP3P21754 424 aa13.49□□□□□ -0.25
HDDC3-205ENST00000559898 ARPC4P59998 168 aa13.49□□□□□ -0.25
HDDC3-205ENST00000559898 EXOSC2Q13868 293 aaKnown RBP13.49□□□□□ -0.25
HDDC3-205ENST00000559898 TTC9CQ8N5M4 171 aa13.49□□□□□ -0.25
HDDC3-205ENST00000559898 OR13F1Q8NGS4 319 aa13.49□□□□□ -0.25
HDDC3-205ENST00000559898 SCGNO76038 276 aa13.48□□□□□ -0.25
HDDC3-205ENST00000559898 KBTBD11O94819 623 aa13.48□□□□□ -0.25
HDDC3-205ENST00000559898 PPYP01298 95 aa13.48□□□□□ -0.25
HDDC3-205ENST00000559898 REG1AP05451 166 aa13.48□□□□□ -0.25
HDDC3-205ENST00000559898 IGHV4-30-4P0DP06 118 aa13.48□□□□□ -0.25
HDDC3-205ENST00000559898 FXYD4P59646 89 aa13.48□□□□□ -0.25
HDDC3-205ENST00000559898 ANKRD13BQ86YJ7 626 aa13.48□□□□□ -0.25
HDDC3-205ENST00000559898 MMD2Q8IY49 270 aa13.48□□□□□ -0.25
HDDC3-205ENST00000559898 TMEM167AQ8TBQ9 72 aa13.48□□□□□ -0.25
HDDC3-205ENST00000559898 USMG5Q96IX5 58 aa13.48□□□□□ -0.25
HDDC3-205ENST00000559898 RCHY1Q96PM5 261 aa13.48□□□□□ -0.25
HDDC3-205ENST00000559898 FYTTD1Q96QD9 318 aaKnown RBP13.48□□□□□ -0.25
HDDC3-205ENST00000559898 THAP7Q9BT49 309 aaPredicted RBP13.48□□□□□ -0.25
HDDC3-205ENST00000559898 ELOVL1Q9BW60 279 aa13.48□□□□□ -0.25
HDDC3-205ENST00000559898 PRELID3BQ9Y3B1 194 aa13.48□□□□□ -0.25
HDDC3-205ENST00000559898 SULT1C2O00338 296 aa13.47□□□□□ -0.25
HDDC3-205ENST00000559898 OR2A4O95047 310 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms