RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 PCGF1Q9BSM1 259 aa10.32□□□□□ -0.76
USP3-213ENST00000559711 QTRT1Q9BXR0 403 aaKnown RBP10.32□□□□□ -0.76
USP3-213ENST00000559711 H3BP45 60 aa10.31□□□□□ -0.76
USP3-213ENST00000559711 M0R1W7 72 aa10.31□□□□□ -0.76
USP3-213ENST00000559711 RBMXL2O75526 392 aaKnown RBP10.31□□□□□ -0.76
USP3-213ENST00000559711 LY86O95711 162 aa10.31□□□□□ -0.76
USP3-213ENST00000559711 APOA2P02652 100 aa10.31□□□□□ -0.76
USP3-213ENST00000559711 IGKV1-16P04430 117 aa10.31□□□□□ -0.76
USP3-213ENST00000559711 SEC11BP0C7V7 166 aa10.31□□□□□ -0.76
USP3-213ENST00000559711 IL3RAP26951 378 aa10.31□□□□□ -0.76
USP3-213ENST00000559711 SPCS3P61009 180 aa10.31□□□□□ -0.76
USP3-213ENST00000559711 HLA-DRB5Q30154 266 aa10.31□□□□□ -0.76
USP3-213ENST00000559711 TMEM14EPQ6UXP3 125 aa10.31□□□□□ -0.76
USP3-213ENST00000559711 COMMD7Q86VX2 200 aa10.31□□□□□ -0.76
USP3-213ENST00000559711 Q8N7P7 452 aa10.31□□□□□ -0.76
USP3-213ENST00000559711 OR1S2Q8NGQ3 325 aa10.31□□□□□ -0.76
USP3-213ENST00000559711 DTD1Q8TEA8 209 aa10.31□□□□□ -0.76
USP3-213ENST00000559711 CLEC7AQ9BXN2 247 aa10.31□□□□□ -0.76
USP3-213ENST00000559711 BARX1Q9HBU1 254 aaPredicted RBP10.31□□□□□ -0.76
USP3-213ENST00000559711 TRAV3A0A0B4J244 114 aa10.31□□□□□ -0.76
USP3-213ENST00000559711 SRRM4A7MD48 611 aaKnown RBP10.31□□□□□ -0.76
USP3-213ENST00000559711 IGHV2-5P01817 119 aa10.31□□□□□ -0.76
USP3-213ENST00000559711 IGHV4-39P01824 125 aa10.31□□□□□ -0.76
USP3-213ENST00000559711 SPP1P10451 314 aa10.31□□□□□ -0.76
USP3-213ENST00000559711 DIAPH2-AS1Q14236 149 aa10.31□□□□□ -0.76
USP3-213ENST00000559711 CLINT1Q14677 625 aa10.31□□□□□ -0.76
USP3-213ENST00000559711 TMEM177Q53S58 311 aa10.31□□□□□ -0.76
USP3-213ENST00000559711 SPANXN5Q5MJ07 72 aa10.31□□□□□ -0.76
USP3-213ENST00000559711 OR4A47Q6IF82 309 aa10.31□□□□□ -0.76
USP3-213ENST00000559711 C1orf122Q6ZSJ8 110 aa10.31□□□□□ -0.76
USP3-213ENST00000559711 TMEM217Q8N7C4 229 aa10.31□□□□□ -0.76
USP3-213ENST00000559711 OSR1Q8TAX0 266 aaPredicted RBP10.31□□□□□ -0.76
USP3-213ENST00000559711 MARVELD3Q96A59 401 aa10.31□□□□□ -0.76
USP3-213ENST00000559711 NARFLQ9H6Q4 476 aa10.31□□□□□ -0.76
USP3-213ENST00000559711 TMEM14BQ9NUH8 114 aa10.31□□□□□ -0.76
USP3-213ENST00000559711 PLA2G2EQ9NZK7 142 aa10.31□□□□□ -0.76
USP3-213ENST00000559711 ONECUT1Q9UBC0 465 aa10.31□□□□□ -0.76
USP3-213ENST00000559711 C15orf61A6NNL5 157 aa10.3□□□□□ -0.76
USP3-213ENST00000559711 CEBPZOSA8MTT3 80 aa10.3□□□□□ -0.76
USP3-213ENST00000559711 FBXO24O75426 580 aa10.3□□□□□ -0.76
USP3-213ENST00000559711 DFFBO76075 338 aa10.3□□□□□ -0.76
USP3-213ENST00000559711 REG1BP48304 166 aa10.3□□□□□ -0.76
USP3-213ENST00000559711 SULT1A2P50226 295 aa10.3□□□□□ -0.76
USP3-213ENST00000559711 OR2B8PP59922 312 aa10.3□□□□□ -0.76
USP3-213ENST00000559711 ARL16Q0P5N6 197 aa10.3□□□□□ -0.76
USP3-213ENST00000559711 TMEM267Q0VDI3 215 aaPredicted RBP10.3□□□□□ -0.76
USP3-213ENST00000559711 HAPLN4Q86UW8 402 aa10.3□□□□□ -0.76
USP3-213ENST00000559711 PDPNQ86YL7 162 aa10.3□□□□□ -0.76
USP3-213ENST00000559711 TGIF2LXQ8IUE1 241 aa10.3□□□□□ -0.76
USP3-213ENST00000559711 ZNF525Q8N782 197 aa10.3□□□□□ -0.76
USP3-213ENST00000559711 LHX4Q969G2 390 aa10.3□□□□□ -0.76
USP3-213ENST00000559711 ZDHHC16Q969W1 377 aa10.3□□□□□ -0.76
USP3-213ENST00000559711 SAT2Q96F10 170 aaPredicted RBP10.3□□□□□ -0.76
USP3-213ENST00000559711 CITED4Q96RK1 184 aa10.3□□□□□ -0.76
USP3-213ENST00000559711 ATP5SQ99766 215 aa10.3□□□□□ -0.76
USP3-213ENST00000559711 REG4Q9BYZ8 158 aa10.3□□□□□ -0.76
USP3-213ENST00000559711 FOXA2Q9Y261 457 aaPredicted RBP10.3□□□□□ -0.76
USP3-213ENST00000559711 ANKRD34BA5PLL1 514 aa10.29□□□□□ -0.76
USP3-213ENST00000559711 BUB1B-PAK6H3BSN5 160 aa10.29□□□□□ -0.76
USP3-213ENST00000559711 IFNA17P01571 189 aa10.29□□□□□ -0.76
USP3-213ENST00000559711 METTL15P1P0C7V9 234 aa10.29□□□□□ -0.76
USP3-213ENST00000559711 PRTN3P24158 256 aa10.29□□□□□ -0.76
USP3-213ENST00000559711 ZFP36P26651 326 aaKnown RBP10.29□□□□□ -0.76
USP3-213ENST00000559711 MC5RP33032 325 aa10.29□□□□□ -0.76
USP3-213ENST00000559711 ARF6P62330 175 aa10.29□□□□□ -0.76
USP3-213ENST00000559711 PUSL1Q8N0Z8 303 aaKnown RBP10.29□□□□□ -0.76
USP3-213ENST00000559711 KIR3DL3Q8N743 410 aa10.29□□□□□ -0.76
USP3-213ENST00000559711 OR11H6Q8NGC7 330 aa10.29□□□□□ -0.76
USP3-213ENST00000559711 OR4C13Q8NGP0 309 aa10.29□□□□□ -0.76
USP3-213ENST00000559711 FLYWCH2Q96CP2 140 aaKnown RBP10.29□□□□□ -0.76
USP3-213ENST00000559711 OR4C12Q96R67 309 aa10.29□□□□□ -0.76
USP3-213ENST00000559711 CCL19Q99731 98 aa10.29□□□□□ -0.76
USP3-213ENST00000559711 BET1LQ9NYM9 111 aa10.29□□□□□ -0.76
USP3-213ENST00000559711 PFDN2Q9UHV9 154 aa10.29□□□□□ -0.76
USP3-213ENST00000559711 STRAPQ9Y3F4 350 aaKnown RBP10.29□□□□□ -0.76
USP3-213ENST00000559711 YLPM1P49750 1951 aaKnown RBP10.29□□□□□ -0.76
USP3-213ENST00000559711 MFSD2BA6NFX1 497 aa10.28□□□□□ -0.76
USP3-213ENST00000559711 A8MXK9 166 aa10.28□□□□□ -0.76
USP3-213ENST00000559711 LY6LH3BQJ8 138 aa10.28□□□□□ -0.76
USP3-213ENST00000559711 H7C2Y5 167 aa10.28□□□□□ -0.76
USP3-213ENST00000559711 UPK2O00526 184 aa10.28□□□□□ -0.76
USP3-213ENST00000559711 SHOXO15266 292 aa10.28□□□□□ -0.76
USP3-213ENST00000559711 VDAC2P45880 294 aaPredicted RBP10.28□□□□□ -0.76
USP3-213ENST00000559711 PDLIM4P50479 330 aa10.28□□□□□ -0.76
USP3-213ENST00000559711 RAB13P51153 203 aa10.28□□□□□ -0.76
USP3-213ENST00000559711 DLX1P56177 255 aa10.28□□□□□ -0.76
USP3-213ENST00000559711 HSPE1P61604 102 aaKnown RBP10.28□□□□□ -0.76
USP3-213ENST00000559711 LMO4P61968 165 aa10.28□□□□□ -0.76
USP3-213ENST00000559711 HBG1P69891 147 aa10.28□□□□□ -0.76
USP3-213ENST00000559711 HBG2P69892 147 aa10.28□□□□□ -0.76
USP3-213ENST00000559711 PAX2Q02962 417 aa10.28□□□□□ -0.76
USP3-213ENST00000559711 OR4P4Q8NGL7 312 aa10.28□□□□□ -0.76
USP3-213ENST00000559711 FAM210AQ96ND0 272 aa10.28□□□□□ -0.76
USP3-213ENST00000559711 BPESC1Q9GZL8 116 aa10.28□□□□□ -0.76
USP3-213ENST00000559711 UNKLQ9H9P5 680 aaKnown RBP10.28□□□□□ -0.76
USP3-213ENST00000559711 PRNDQ9UKY0 176 aa10.28□□□□□ -0.76
USP3-213ENST00000559711 TCF19Q9Y242 345 aa10.28□□□□□ -0.76
USP3-213ENST00000559711 WASHC3Q9Y3C0 194 aa10.28□□□□□ -0.76
USP3-213ENST00000559711 AMMECR1Q9Y4X0 333 aaPredicted RBP10.28□□□□□ -0.76
USP3-213ENST00000559711 PMS2P5A8MQ11 134 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms