RNA–Protein interactions for RNA: ENST00000559658.5

CHRNA3-206, Transcript of cholinergic receptor nicotinic alpha 3 subunit, humanhuman

TSL 2

Gene CHRNA3, Length 1,889 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3-206ENST00000559658 MMP24Q9Y5R2 645 aa13.97□□□□□ -0.17
CHRNA3-206ENST00000559658 TIMM23O14925 209 aa13.96□□□□□ -0.17
CHRNA3-206ENST00000559658 PITX3O75364 302 aa13.96□□□□□ -0.17
CHRNA3-206ENST00000559658 KIR2DS2P43631 304 aa13.96□□□□□ -0.17
CHRNA3-206ENST00000559658 UBE2E1P51965 193 aa13.96□□□□□ -0.17
CHRNA3-206ENST00000559658 CD300LFQ8TDQ1 290 aa13.96□□□□□ -0.17
CHRNA3-206ENST00000559658 RRNAD1Q96FB5 475 aaKnown RBP13.96□□□□□ -0.17
CHRNA3-206ENST00000559658 TMEM140Q9NV12 185 aa13.96□□□□□ -0.17
CHRNA3-206ENST00000559658 RCL1Q9Y2P8 373 aaKnown RBP13.96□□□□□ -0.17
CHRNA3-206ENST00000559658 LSM5Q9Y4Y9 91 aaKnown RBP13.96□□□□□ -0.17
CHRNA3-206ENST00000559658 AUP1Q9Y679 476 aa13.96□□□□□ -0.17
CHRNA3-206ENST00000559658 TLN2Q9Y4G6 2542 aa13.96□□□□□ -0.18
CHRNA3-206ENST00000559658 OTOGQ6ZRI0 2925 aa13.96□□□□□ -0.18
CHRNA3-206ENST00000559658 LEUTXA8MZ59 168 aa13.95□□□□□ -0.18
CHRNA3-206ENST00000559658 K7EPK0 472 aa13.95□□□□□ -0.18
CHRNA3-206ENST00000559658 TGFAP01135 160 aa13.95□□□□□ -0.18
CHRNA3-206ENST00000559658 APOA2P02652 100 aa13.95□□□□□ -0.18
CHRNA3-206ENST00000559658 MYOD1P15172 320 aa13.95□□□□□ -0.18
CHRNA3-206ENST00000559658 CNTFRP26992 372 aa13.95□□□□□ -0.18
CHRNA3-206ENST00000559658 PSMB6P28072 239 aa13.95□□□□□ -0.18
CHRNA3-206ENST00000559658 RTL8BQ17RB0 113 aa13.95□□□□□ -0.18
CHRNA3-206ENST00000559658 C9orf62Q8N4C0 152 aa13.95□□□□□ -0.18
CHRNA3-206ENST00000559658 FAM71E2Q8N5Q1 922 aa13.95□□□□□ -0.18
CHRNA3-206ENST00000559658 DMBX1Q8NFW5 382 aa13.95□□□□□ -0.18
CHRNA3-206ENST00000559658 CFHR4Q92496 578 aa13.95□□□□□ -0.18
CHRNA3-206ENST00000559658 SMAD7O15105 426 aaKnown RBP13.95□□□□□ -0.18
CHRNA3-206ENST00000559658 GAPDHP04406 335 aaKnown RBP13.95□□□□□ -0.18
CHRNA3-206ENST00000559658 SMCO1Q147U7 214 aa13.95□□□□□ -0.18
CHRNA3-206ENST00000559658 KLF17Q5JT82 389 aaPredicted RBP13.95□□□□□ -0.18
CHRNA3-206ENST00000559658 OR1S1Q8NH92 325 aa13.95□□□□□ -0.18
CHRNA3-206ENST00000559658 ASB13Q8WXK3 278 aa13.95□□□□□ -0.18
CHRNA3-206ENST00000559658 RHOVQ96L33 236 aa13.95□□□□□ -0.18
CHRNA3-206ENST00000559658 HARBI1Q96MB7 349 aa13.95□□□□□ -0.18
CHRNA3-206ENST00000559658 COMMD9Q9P000 198 aa13.95□□□□□ -0.18
CHRNA3-206ENST00000559658 WASHC3Q9Y3C0 194 aa13.95□□□□□ -0.18
CHRNA3-206ENST00000559658 CSPG4Q6UVK1 2322 aa13.95□□□□□ -0.18
CHRNA3-206ENST00000559658 TNCP24821 2201 aa13.95□□□□□ -0.18
CHRNA3-206ENST00000559658 TRAV20A0A0B4J274 112 aa13.94□□□□□ -0.18
CHRNA3-206ENST00000559658 NPFFO15130 113 aa13.94□□□□□ -0.18
CHRNA3-206ENST00000559658 ARPC5O15511 151 aa13.94□□□□□ -0.18
CHRNA3-206ENST00000559658 NQO2P16083 231 aa13.94□□□□□ -0.18
CHRNA3-206ENST00000559658 CXCL2P19875 107 aa13.94□□□□□ -0.18
CHRNA3-206ENST00000559658 POLR2GP62487 172 aaKnown RBP eCLIP13.94□□□□□ -0.18
CHRNA3-206ENST00000559658 SPINK9Q5DT21 86 aa13.94□□□□□ -0.18
CHRNA3-206ENST00000559658 THOC7Q6I9Y2 204 aaKnown RBP13.94□□□□□ -0.18
CHRNA3-206ENST00000559658 OR4A47Q6IF82 309 aa13.94□□□□□ -0.18
CHRNA3-206ENST00000559658 H2BFWTQ7Z2G1 175 aa13.94□□□□□ -0.18
CHRNA3-206ENST00000559658 FOXC2Q99958 501 aa13.94□□□□□ -0.18
CHRNA3-206ENST00000559658 TPSG1Q9NRR2 321 aa13.94□□□□□ -0.18
CHRNA3-206ENST00000559658 ACANP16112 2415 aa13.94□□□□□ -0.18
CHRNA3-206ENST00000559658 SHOXO15266 292 aa13.93□□□□□ -0.18
CHRNA3-206ENST00000559658 IGLV2-23P01705 113 aa13.93□□□□□ -0.18
CHRNA3-206ENST00000559658 SAA1P0DJI8 122 aaPredicted RBP13.93□□□□□ -0.18
CHRNA3-206ENST00000559658 CYCSP99999 105 aaKnown RBP13.93□□□□□ -0.18
CHRNA3-206ENST00000559658 PDPNQ86YL7 162 aa13.93□□□□□ -0.18
CHRNA3-206ENST00000559658 HYLS1Q96M11 299 aa13.93□□□□□ -0.18
CHRNA3-206ENST00000559658 A0A1B0GU03 582 aa13.93□□□□□ -0.18
CHRNA3-206ENST00000559658 MSGN1A6NI15 193 aa13.93□□□□□ -0.18
CHRNA3-206ENST00000559658 TMEM50AO95807 157 aa13.93□□□□□ -0.18
CHRNA3-206ENST00000559658 RAB13P51153 203 aa13.93□□□□□ -0.18
CHRNA3-206ENST00000559658 LGALS4P56470 323 aa13.93□□□□□ -0.18
CHRNA3-206ENST00000559658 LGALSLQ3ZCW2 172 aaPredicted RBP13.93□□□□□ -0.18
CHRNA3-206ENST00000559658 TMEM177Q53S58 311 aa13.93□□□□□ -0.18
CHRNA3-206ENST00000559658 FLYWCH2Q96CP2 140 aaKnown RBP13.93□□□□□ -0.18
CHRNA3-206ENST00000559658 SPIN2AQ99865 258 aa13.93□□□□□ -0.18
CHRNA3-206ENST00000559658 SPIN2BQ9BPZ2 258 aa13.93□□□□□ -0.18
CHRNA3-206ENST00000559658 QTRT1Q9BXR0 403 aaKnown RBP13.93□□□□□ -0.18
CHRNA3-206ENST00000559658 FLNBO75369 2602 aaKnown RBP13.92□□□□□ -0.18
CHRNA3-206ENST00000559658 PLXNB1O43157 2135 aa13.92□□□□□ -0.18
CHRNA3-206ENST00000559658 IGHV1-69DA0A0B4J2H0 117 aa13.92□□□□□ -0.18
CHRNA3-206ENST00000559658 SSSCA1O60232 199 aa13.92□□□□□ -0.18
CHRNA3-206ENST00000559658 DEDDO75618 318 aa13.92□□□□□ -0.18
CHRNA3-206ENST00000559658 VENTXO95231 258 aa13.92□□□□□ -0.18
CHRNA3-206ENST00000559658 IGHV1-69P01742 117 aa13.92□□□□□ -0.18
CHRNA3-206ENST00000559658 NKX2-1P43699 371 aaPredicted RBP13.92□□□□□ -0.18
CHRNA3-206ENST00000559658 RELBQ01201 579 aa13.92□□□□□ -0.18
CHRNA3-206ENST00000559658 DHRS7BQ6IAN0 325 aaPredicted RBP13.92□□□□□ -0.18
CHRNA3-206ENST00000559658 DCUN1D4Q92564 292 aa13.92□□□□□ -0.18
CHRNA3-206ENST00000559658 ITGB1BP2Q9UKP3 347 aa13.92□□□□□ -0.18
CHRNA3-206ENST00000559658 POMT1Q9Y6A1 747 aa13.92□□□□□ -0.18
CHRNA3-206ENST00000559658 RNF222A6NCQ9 220 aa13.91□□□□□ -0.18
CHRNA3-206ENST00000559658 SLC25A6P12236 298 aa13.91□□□□□ -0.18
CHRNA3-206ENST00000559658 CEACAM3P40198 252 aa13.91□□□□□ -0.18
CHRNA3-206ENST00000559658 ERVK-16P61578 105 aa13.91□□□□□ -0.18
CHRNA3-206ENST00000559658 ID3Q02535 119 aa13.91□□□□□ -0.18
CHRNA3-206ENST00000559658 PRSS54Q6PEW0 395 aa13.91□□□□□ -0.18
CHRNA3-206ENST00000559658 OR4C13Q8NGP0 309 aa13.91□□□□□ -0.18
CHRNA3-206ENST00000559658 MS4A7Q9GZW8 240 aaPredicted RBP13.91□□□□□ -0.18
CHRNA3-206ENST00000559658 C11orf1Q9H5F2 150 aa13.91□□□□□ -0.18
CHRNA3-206ENST00000559658 HSPB11Q9Y547 144 aa13.91□□□□□ -0.18
CHRNA3-206ENST00000559658 A0A0U1RQK1 487 aa13.91□□□□□ -0.18
CHRNA3-206ENST00000559658 TXNL1O43396 289 aa13.91□□□□□ -0.18
CHRNA3-206ENST00000559658 IGKV1D-33P01593 117 aa13.91□□□□□ -0.18
CHRNA3-206ENST00000559658 IGKV1-33P01594 117 aa13.91□□□□□ -0.18
CHRNA3-206ENST00000559658 SLC25A4P12235 298 aa13.91□□□□□ -0.18
CHRNA3-206ENST00000559658 AP2S1P53680 142 aaPredicted RBP13.91□□□□□ -0.18
CHRNA3-206ENST00000559658 RPS16P62249 146 aaKnown RBP13.91□□□□□ -0.18
CHRNA3-206ENST00000559658 FGL1Q08830 312 aa13.91□□□□□ -0.18
CHRNA3-206ENST00000559658 HNF4GQ14541 408 aa13.91□□□□□ -0.18
CHRNA3-206ENST00000559658 POU2AF1Q16633 256 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms