RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 FCGR3BO75015 233 aa6.03□□□□□ -1.44
VPS13C-206ENST00000558338 WISP2O76076 250 aa6.03□□□□□ -1.44
VPS13C-206ENST00000558338 OPN1MWP04001 364 aa6.03□□□□□ -1.44
VPS13C-206ENST00000558338 OPN1MW2P0DN77 364 aa6.03□□□□□ -1.44
VPS13C-206ENST00000558338 OPN1MW3P0DN78 364 aa6.03□□□□□ -1.44
VPS13C-206ENST00000558338 NQO2P16083 231 aa6.03□□□□□ -1.44
VPS13C-206ENST00000558338 CEACAM8P31997 349 aaPredicted RBP6.03□□□□□ -1.44
VPS13C-206ENST00000558338 ARL3P36405 182 aa6.03□□□□□ -1.44
VPS13C-206ENST00000558338 THBS3P49746 956 aa6.03□□□□□ -1.44
VPS13C-206ENST00000558338 MEOX2P50222 304 aa6.03□□□□□ -1.44
VPS13C-206ENST00000558338 FAM90A2PQ658T7 463 aa6.03□□□□□ -1.44
VPS13C-206ENST00000558338 ZNF474Q6S9Z5 364 aaPredicted RBP6.03□□□□□ -1.44
VPS13C-206ENST00000558338 FAM180AQ6UWF9 173 aa6.03□□□□□ -1.44
VPS13C-206ENST00000558338 C1orf87Q8N0U7 546 aa6.03□□□□□ -1.44
VPS13C-206ENST00000558338 TPRX1Q8N7U7 411 aa6.03□□□□□ -1.44
VPS13C-206ENST00000558338 FAM57AQ8TBR7 257 aa6.03□□□□□ -1.44
VPS13C-206ENST00000558338 CA5BP1Q8WTZ4 195 aa6.03□□□□□ -1.44
VPS13C-206ENST00000558338 ITLN1Q8WWA0 313 aa6.03□□□□□ -1.44
VPS13C-206ENST00000558338 S1PR3Q99500 378 aa6.03□□□□□ -1.44
VPS13C-206ENST00000558338 NPCDR1Q9BY65 106 aa6.03□□□□□ -1.44
VPS13C-206ENST00000558338 WNT10AQ9GZT5 417 aa6.03□□□□□ -1.44
VPS13C-206ENST00000558338 VSIRQ9H7M9 311 aa6.03□□□□□ -1.44
VPS13C-206ENST00000558338 SEPSECSQ9HD40 501 aaKnown RBP6.03□□□□□ -1.44
VPS13C-206ENST00000558338 RNF7Q9UBF6 113 aa6.03□□□□□ -1.44
VPS13C-206ENST00000558338 NCOR1O75376 2440 aa6.03□□□□□ -1.44
VPS13C-206ENST00000558338 TRGV8A0A0C4DH27 118 aa6.02□□□□□ -1.44
VPS13C-206ENST00000558338 SMCO3A2RU48 225 aa6.02□□□□□ -1.44
VPS13C-206ENST00000558338 ZNF561-AS1K7EIQ3 104 aa6.02□□□□□ -1.44
VPS13C-206ENST00000558338 AP4M1O00189 453 aa6.02□□□□□ -1.44
VPS13C-206ENST00000558338 TM4SF5O14894 197 aa6.02□□□□□ -1.44
VPS13C-206ENST00000558338 IRF2P14316 349 aa6.02□□□□□ -1.44
VPS13C-206ENST00000558338 FGF8P55075 233 aaPredicted RBP6.02□□□□□ -1.44
VPS13C-206ENST00000558338 EDDM3BP56851 147 aa6.02□□□□□ -1.44
VPS13C-206ENST00000558338 BRWD1-AS2P59051 145 aa6.02□□□□□ -1.44
VPS13C-206ENST00000558338 OR2B8PP59922 312 aa6.02□□□□□ -1.44
VPS13C-206ENST00000558338 SNRPEP62304 92 aaKnown RBP6.02□□□□□ -1.44
VPS13C-206ENST00000558338 TNFAIP6P98066 277 aaPredicted RBP6.02□□□□□ -1.44
VPS13C-206ENST00000558338 MEF2BQ02080 365 aaPredicted RBP6.02□□□□□ -1.44
VPS13C-206ENST00000558338 FFAR4Q5NUL3 377 aa6.02□□□□□ -1.44
VPS13C-206ENST00000558338 ADAM5Q6NVV9 412 aa6.02□□□□□ -1.44
VPS13C-206ENST00000558338 MRPL41Q8IXM3 137 aaKnown RBP6.02□□□□□ -1.44
VPS13C-206ENST00000558338 NUP37Q8NFH4 326 aa6.02□□□□□ -1.44
VPS13C-206ENST00000558338 OR10G9Q8NGN4 311 aa6.02□□□□□ -1.44
VPS13C-206ENST00000558338 OR10G7Q8NGN6 311 aa6.02□□□□□ -1.44
VPS13C-206ENST00000558338 RFESDQ8TAC1 157 aa6.02□□□□□ -1.44
VPS13C-206ENST00000558338 Q8TCH9 128 aa6.02□□□□□ -1.44
VPS13C-206ENST00000558338 SDSLQ96GA7 329 aa6.02□□□□□ -1.44
VPS13C-206ENST00000558338 DIRC2Q96SL1 478 aa6.02□□□□□ -1.44
VPS13C-206ENST00000558338 QTRT1Q9BXR0 403 aaKnown RBP6.02□□□□□ -1.44
VPS13C-206ENST00000558338 IFI27L2Q9H2X8 130 aa6.02□□□□□ -1.44
VPS13C-206ENST00000558338 GFOD1Q9NXC2 390 aa6.02□□□□□ -1.44
VPS13C-206ENST00000558338 NAT8Q9UHE5 227 aa6.02□□□□□ -1.44
VPS13C-206ENST00000558338 COL6A3P12111 3177 aa6.02□□□□□ -1.45
VPS13C-206ENST00000558338 NKX6-3A6NJ46 265 aa6.02□□□□□ -1.45
VPS13C-206ENST00000558338 ZNF729A6NN14 1252 aaPredicted RBP6.02□□□□□ -1.45
VPS13C-206ENST00000558338 C15orf62A8K5M9 175 aa6.02□□□□□ -1.45
VPS13C-206ENST00000558338 ZNF727A8MUV8 499 aa6.02□□□□□ -1.45
VPS13C-206ENST00000558338 DEFB108AA8MXU0 73 aa6.02□□□□□ -1.45
VPS13C-206ENST00000558338 MKRN2OSH3BPM6 223 aa6.02□□□□□ -1.45
VPS13C-206ENST00000558338 CLDN34H7C241 214 aa6.02□□□□□ -1.45
VPS13C-206ENST00000558338 SPRY3O43610 288 aa6.02□□□□□ -1.45
VPS13C-206ENST00000558338 IGHV2-5P01817 119 aa6.02□□□□□ -1.45
VPS13C-206ENST00000558338 TFF1P04155 84 aa6.02□□□□□ -1.45
VPS13C-206ENST00000558338 MDKP21741 143 aaPredicted RBP6.02□□□□□ -1.45
VPS13C-206ENST00000558338 CD40P25942 277 aa6.02□□□□□ -1.45
VPS13C-206ENST00000558338 RPS10P46783 165 aaKnown RBP6.02□□□□□ -1.45
VPS13C-206ENST00000558338 RND2P52198 227 aa6.02□□□□□ -1.45
VPS13C-206ENST00000558338 LOXL3P58215 753 aa6.02□□□□□ -1.45
VPS13C-206ENST00000558338 RPS16P62249 146 aaKnown RBP6.02□□□□□ -1.45
VPS13C-206ENST00000558338 ELOBQ15370 118 aa6.02□□□□□ -1.45
VPS13C-206ENST00000558338 LTC4SQ16873 150 aa6.02□□□□□ -1.45
VPS13C-206ENST00000558338 TMEM249Q2WGJ8 235 aa6.02□□□□□ -1.45
VPS13C-206ENST00000558338 NCR3LG1Q68D85 454 aa6.02□□□□□ -1.45
VPS13C-206ENST00000558338 STUMQ69YW2 141 aa6.02□□□□□ -1.45
VPS13C-206ENST00000558338 ACSM6Q6P461 480 aa6.02□□□□□ -1.45
VPS13C-206ENST00000558338 CYP2G1PQ6ZSU1 146 aa6.02□□□□□ -1.45
VPS13C-206ENST00000558338 LRP11Q86VZ4 500 aa6.02□□□□□ -1.45
VPS13C-206ENST00000558338 RPP25LQ8N5L8 163 aaKnown RBP6.02□□□□□ -1.45
VPS13C-206ENST00000558338 RBMXL3Q8N7X1 1067 aaKnown RBP6.02□□□□□ -1.45
VPS13C-206ENST00000558338 RAB1CQ92928 201 aa6.02□□□□□ -1.45
VPS13C-206ENST00000558338 KRTAP9-9Q9BYP9 154 aa6.02□□□□□ -1.45
VPS13C-206ENST00000558338 KRTAP9-4Q9BYQ2 154 aa6.02□□□□□ -1.45
VPS13C-206ENST00000558338 SDF2L1Q9HCN8 221 aa6.02□□□□□ -1.45
VPS13C-206ENST00000558338 ELOVL5Q9NYP7 299 aa6.02□□□□□ -1.45
VPS13C-206ENST00000558338 WDR83OSQ9Y284 106 aa6.02□□□□□ -1.45
VPS13C-206ENST00000558338 KIAA2026Q5HYC2 2103 aa6.01□□□□□ -1.45
VPS13C-206ENST00000558338 IGHV3OR15-7A0A075B7D8 119 aa6.01□□□□□ -1.45
VPS13C-206ENST00000558338 KBTBD11-OT1A0A1B0GTJ5 212 aa6.01□□□□□ -1.45
VPS13C-206ENST00000558338 SEC14L6B5MCN3 397 aa6.01□□□□□ -1.45
VPS13C-206ENST00000558338 EIF3GO75821 320 aaKnown RBP eCLIP6.01□□□□□ -1.45
VPS13C-206ENST00000558338 KBTBD11O94819 623 aa6.01□□□□□ -1.45
VPS13C-206ENST00000558338 FBP1P09467 338 aa6.01□□□□□ -1.45
VPS13C-206ENST00000558338 OR9G9P0C7N8 305 aa6.01□□□□□ -1.45
VPS13C-206ENST00000558338 CD1BP29016 333 aa6.01□□□□□ -1.45
VPS13C-206ENST00000558338 CDC34P49427 236 aaPredicted RBP6.01□□□□□ -1.45
VPS13C-206ENST00000558338 FABP9Q0Z7S8 132 aa6.01□□□□□ -1.45
VPS13C-206ENST00000558338 MSMPQ1L6U9 139 aa6.01□□□□□ -1.45
VPS13C-206ENST00000558338 SAMD5Q5TGI4 173 aa6.01□□□□□ -1.45
VPS13C-206ENST00000558338 TMEM108Q6UXF1 575 aa6.01□□□□□ -1.45
VPS13C-206ENST00000558338 SSX7Q7RTT5 188 aa6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms